Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0011150

Physical Location & Seq

Genomic Coordinates Reverse (-)

48730685 .. 48734341

Gene Structure 3657 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG354800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCATGTTCTTGGAGGTGGAGGCCATGGCGGGTTTTGGGGTTGGGACTCTCTACCAAAGAAACCCAAACAACAAAGAAAGCGATTCGATTCCAAATCCTCCAATTCTGTCGAGGCAAACGGAGGACCCTGTTTCCGGTTCCCGTTAAAGCAAGCAGTGACGGCTGGCTCACTGGCCCTAACCGGAGACACAATTGCTCAGCTCAGAGACCGCTGGAGAAAGGCCAACACTTTAGACCAACAAAGCAGCGGCTCCACACCCACCTCTCAGGATGTTACTCAAGTTCTCTTATCAGACCACGATTGGCTTCGTGCACTTCGGATGACTTCCTATGGGTTTGTGTTGTACGGCCCTGGCTCATATGCTTGGTACCAGTATCTTGATCATGCTTTGCCAGAGAAAACAGTAGTGAACCTTTTGTTGAAGGTTTTATTGAACCAAGTTGTGCTTGGTCCATCTGTGATTGCTGTTGTTTTTGCATGGAACAATTTATGGCAAGGGAAACTCTCACAGCTTCCAGATAAATACCGTAAAGATGCTCTTCCCACATTACTTTATGGATTTAGGTTCTGGATACCCGTCAGTCTATTAAACTTCTGGGTTGTACCTCTTCAAGCCCGTGTAGCTTTCATGTGTGTGGGTTCAATATTCTGGAACTTCTGCTTGTCTTCAACAATGAGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0009987 GO:0030154 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0044424 GO:0044444 GO:0044464 GO:0048066 GO:0048869 GO:0050896 GO:0050931 GO:0050935 GO:0051716 GO:0070887 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

228

Amino Acids

25.6

Weight (kDa)

9.77

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mpv17_PMP22	PF04117	164 - 223	1.4e-15	Mpv17 / PMP22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42770
fragaria_vesca	FvH4_6g27820 FvH4_6g27820
malus_domestica	MD09G1234300.v1.1 MD17G1263400.v1.1
prunus_persica	Prupe.3G112500_v2.0.a1 Prupe.3G112500_v2.0.a1 Prupe.3G112500_v2.0.a1
pyrus_communis	pycom17g26360
rosa_chinensis	RchiOBHm_Chr2g0131101
rosa_laevigata	RLG00000019167
rosa_multiflora	Rmu_sc0003629.1_g000065 Rmu_sc0034784.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113200
rosa_rugosa	Rorug02G0295000
rosa_samantha	Rh2AG347300 Rh2BG354800 Rh2CG333500 Rh2DG372700
rosa_wichuraiana	Rw2G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	369
AccB1I	GGYRCC	1 cut(s)	369
AciI	CCGC	3 cut(s)	30, 211, 249
AfaI	GTAC	3 cut(s)	347, 371, 606
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	5 cut(s)	424, 436, 614, 645, 672
AjnI	CCWGG	1 cut(s)	352
AluBI	AGCT	3 cut(s)	202, 514, 626
AluI	AGCT	3 cut(s)	202, 514, 626
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	2 cut(s)	180, 201
Alw44I	GTGCAC	1 cut(s)	312
AoxI	GGCC	4 cut(s)	22, 174, 222, 349
ApaLI	GTGCAC	1 cut(s)	312
ApeKI	GCWGC	1 cut(s)	246
Asp718I	GGTACC	1 cut(s)	369
AspS9I	GGNCC	4 cut(s)	125, 175, 350, 452
AvaII	GGWCC	2 cut(s)	125, 452
BaeGI	GKGCMC	1 cut(s)	316
BanI	GGYRCC	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	660
Bbv12I	GWGCWC	1 cut(s)	316
BbvI	GCAGC	1 cut(s)	258
BccI	CCATC	1 cut(s)	463
BceAI	ACGGC	2 cut(s)	177, 364
BciT130I	CCWGG	1 cut(s)	354
BciVI	GTATCC	1 cut(s)	567
BclI	TGATCA	1 cut(s)	382
BcoDI	GTCTC	2 cut(s)	180, 201
BfuI	GTATCC	1 cut(s)	567
BisI	GCNGC	2 cut(s)	247, 250
BlpI	GCTNAGC	1 cut(s)	198
BlsI	GCNGC	2 cut(s)	248, 251
Bme1390I	CCNGG	1 cut(s)	354
Bme18I	GGWCC	2 cut(s)	125, 452
BmgT120I	GGNCC	4 cut(s)	125, 175, 350, 452
BmiI	GGNNCC	4 cut(s)	127, 140, 253, 371
BmrFI	CCNGG	1 cut(s)	354
BmsI	GCATC	1 cut(s)	526
BpiI	GAAGAC	1 cut(s)	660
BpmI	CTGGAG	1 cut(s)	235
Bpu1102I	GCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	264
BsaI	GGTCTC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	25, 352
BsaWI	WCCGGW	2 cut(s)	135, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	2 cut(s)	177, 373
BseBI	CCWGG	1 cut(s)	354
BseDI	CCNNGG	2 cut(s)	25, 352
BseGI	GGATG	2 cut(s)	277, 327
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMII	CTCAG	3 cut(s)	212, 217, 281
BseNI	ACTGG	2 cut(s)	177, 373
BseSI	GKGCMC	1 cut(s)	316
BseXI	GCAGC	1 cut(s)	258
BshFI	GGCC	4 cut(s)	24, 176, 224, 351
BshNI	GGYRCC	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	316
BsiSI	CCGG	2 cut(s)	136, 183
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	2 cut(s)	180, 201
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	4 cut(s)	24, 176, 224, 351
Bso31I	GGTCTC	1 cut(s)	201
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	1 cut(s)	382
Bsp1720I	GCTNAGC	1 cut(s)	198
Bsp19I	CCATGG	1 cut(s)	25
BspACI	CCGC	3 cut(s)	30, 211, 249
BspANI	GGCC	4 cut(s)	24, 176, 224, 351
BspCNI	CTCAG	3 cut(s)	211, 216, 280
BspLI	GGNNCC	4 cut(s)	127, 140, 253, 371
BspQI	GCTCTTC	1 cut(s)	546
BspT107I	GGYRCC	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	177, 373
BssECI	CCNNGG	2 cut(s)	25, 352
BssMI	GATC	1 cut(s)	382
BssT1I	CCWWGG	1 cut(s)	25
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	2 cut(s)	406, 530
Bst6I	CTCTTC	2 cut(s)	546, 615
BstC8I	GCNNGC	2 cut(s)	153, 166
BstDEI	CTNAG	3 cut(s)	198, 203, 267
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	277, 327
BstKTI	GATC	1 cut(s)	385
BstMAI	GTCTC	2 cut(s)	180, 201
BstMBI	GATC	1 cut(s)	382
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 623
BstNI	CCWGG	1 cut(s)	354
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	1 cut(s)	352
BstSLI	GKGCMC	1 cut(s)	316
BstV1I	GCAGC	1 cut(s)	258
BstV2I	GAAGAC	1 cut(s)	660
BsuI	GTATCC	1 cut(s)	567
BsuRI	GGCC	4 cut(s)	24, 176, 224, 351
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	277, 327
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	2 cut(s)	162, 170
Cac8I	GCNNGC	2 cut(s)	153, 166
Cfr13I	GGNCC	4 cut(s)	125, 175, 350, 452
Csp6I	GTAC	3 cut(s)	346, 370, 605
CviAII	CATG	5 cut(s)	5, 26, 386, 480, 631
CviQI	GTAC	3 cut(s)	346, 370, 605
DdeI	CTNAG	3 cut(s)	198, 203, 267
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
Eam1104I	CTCTTC	2 cut(s)	546, 615
EarI	CTCTTC	2 cut(s)	546, 615
Eco130I	CCWWGG	1 cut(s)	25
Eco31I	GGTCTC	1 cut(s)	201
Eco47I	GGWCC	2 cut(s)	125, 452
EcoO109I	RGGNCCY	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	352
EcoT14I	CCWWGG	1 cut(s)	25
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	25
FaeI	CATG	5 cut(s)	8, 29, 389, 483, 634
FalI	AAGNNNNNCTT	4 cut(s)	432, 464, 525, 557
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	5 cut(s)	4, 25, 385, 479, 630
FauI	CCCGC	1 cut(s)	23
FauNDI	CATATG	1 cut(s)	361
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	2 cut(s)	247, 250
FokI	GGATG	2 cut(s)	284, 334
Fsp4HI	GCNGC	2 cut(s)	247, 250
GluI	GCNGC	2 cut(s)	247, 250
GsuI	CTGGAG	1 cut(s)	235
HaeIII	GGCC	4 cut(s)	24, 176, 224, 351
HapII	CCGG	2 cut(s)	136, 183
Hin1II	CATG	5 cut(s)	8, 29, 389, 483, 634
HinfI	GANTC	3 cut(s)	47, 84, 89
HpaII	CCGG	2 cut(s)	136, 183
Hpy166II	GTNNAC	2 cut(s)	314, 412
Hpy188I	TCNGA	3 cut(s)	206, 295, 321
Hpy188III	TCNNGA	5 cut(s)	269, 380, 518, 571, 652
Hpy8I	GTNNAC	2 cut(s)	314, 412
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	2 cut(s)	406, 530
HpyCH4V	TGCA	3 cut(s)	4, 314, 479
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 623
HpyF3I	CTNAG	3 cut(s)	198, 203, 267
Hsp92II	CATG	5 cut(s)	8, 29, 389, 483, 634
KpnI	GGTACC	1 cut(s)	373
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	1 cut(s)	382
LguI	GCTCTTC	1 cut(s)	546
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	1 cut(s)	258
LweI	GCATC	1 cut(s)	526
MaeIII	GTNAC	2 cut(s)	157, 274
MalI	GATC	1 cut(s)	384
MboI	GATC	1 cut(s)	382
MboII	GAAGA	3 cut(s)	533, 602, 660
MfeI	CAATTG	1 cut(s)	192
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	3 cut(s)	103, 192, 487
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	7 cut(s)	8, 14, 106, 109, 116, 274, 618
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	146, 590
MslI	CAYNNNNRTG	1 cut(s)	635
MspA1I	CMGCKG	2 cut(s)	213, 249
MspI	CCGG	2 cut(s)	136, 183
MspR9I	CCNGG	1 cut(s)	354
MunI	CAATTG	1 cut(s)	192
MvaI	CCWGG	1 cut(s)	354
MwoI	GCNNNNNNNGC	2 cut(s)	161, 623
NcoI	CCATGG	1 cut(s)	25
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	1 cut(s)	382
NlaIII	CATG	5 cut(s)	8, 29, 389, 483, 634
NlaIV	GGNNCC	4 cut(s)	127, 140, 253, 371
NmuCI	GTSAC	1 cut(s)	157
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PciSI	GCTCTTC	1 cut(s)	546
PfeI	GAWTC	2 cut(s)	84, 89
PkrI	GCNGC	2 cut(s)	248, 251
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
PpuMI	RGGWCCY	1 cut(s)	125
Psp5II	RGGWCCY	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	352
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	4 cut(s)	127, 140, 253, 371
PspPI	GGNCC	4 cut(s)	125, 175, 350, 452
PspPPI	RGGWCCY	1 cut(s)	125
RsaI	GTAC	3 cut(s)	347, 371, 606
RsaNI	GTAC	3 cut(s)	346, 370, 605
RseI	CAYNNNNRTG	1 cut(s)	635
SapI	GCTCTTC	1 cut(s)	546
SaqAI	TTAA	2 cut(s)	146, 590
SatI	GCNGC	2 cut(s)	247, 250
Sau3AI	GATC	1 cut(s)	382
Sau96I	GGNCC	4 cut(s)	125, 175, 350, 452
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	354
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	9 cut(s)	19, 204, 266, 417, 429, 516, 569, 610, 628
SfaNI	GCATC	1 cut(s)	526
SinI	GGWCC	2 cut(s)	125, 452
SmiMI	CAYNNNNRTG	1 cut(s)	635
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
Sse9I	AATT	3 cut(s)	103, 192, 487
SsiI	CCGC	3 cut(s)	30, 211, 249
SspI	AATATT	1 cut(s)	648
StyD4I	CCNGG	1 cut(s)	352
StyI	CCWWGG	1 cut(s)	25
TaaI	ACNGT	2 cut(s)	406, 530
TaqI	TCGA	2 cut(s)	87, 111
TasI	AATT	3 cut(s)	103, 192, 487
TauI	GCSGC	1 cut(s)	252
TfiI	GAWTC	2 cut(s)	84, 89
Tru1I	TTAA	2 cut(s)	146, 590
Tru9I	TTAA	2 cut(s)	146, 590
TscAI	CASTG	2 cut(s)	162, 177
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	1 cut(s)	246
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	619
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	2 cut(s)	162, 177
VneI	GTGCAC	1 cut(s)	312
VpaK11BI	GGWCC	2 cut(s)	125, 452
XceI	RCATGY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	446
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.