Rh2CG333500

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011150
Physical Location & Seq
Reverse (-)
43873369 .. 43875819
2451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG333500.1

Sequence Viewer

Length: 687 bp
ATGCATGTTCTTGGAGGTGGAGGCCATGGCGGGTTTTGGGGCTGGGACTCTCTTCCAAGGAAACCCAAACAACAAAGAAAGCGATTCGATTCCAAATCCTCCAATTCTGTGGAGGCAAACGGAGGACCCGGTTTCCGGTTCCCGTTAAAGCAAGCAGTGACGGCTGGCTCACTGGCTCTAACCGGGGACACAATTGCTCAGCTCAGAGAGCGCTGGAGAAAGGCCAAGACTTTAGACCAACAAAGCGGTGGCTCCACACCCACCTCTCAGGATGTTACTCAAGTTCTCTTATCAGACCACGATTGGCTTCGTGCACTTCGGATGACTTCCTATGGGTTTCTGTTGTACGGCCCTGGCTCATATGCTTGGTACCAGTATCTTGATCATGCTTTGCCAGGGAAAACAGTAGTCAACCTTTTGTTGAAGGTTTTATTGAACCAAGTTGTGCTTGGTCCATCTGTGATTGCTGTTGTTTTTGCATGGAACAATTTATGGCAAGGGAAACTCTCACAGCTTCCAGATAAATACCGTAAAGATGCTCTTCCCACATTACTTTATGGATTTAGGTTCTGGATACCCGTCAGTCTATTAAACTTCTGGGTTGTACCTCTGCAAGCCCGTGTAGCTTTCATGTGTGTGGGTTCAATATTCTGGAACTTCTGCTTGTCTTCAACAATGAGCAAGTAA

Protein Analysis

228

Amino Acids

25.52

Weight (kDa)

10.01

Isoelectric Point (pI)

36.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 164 - 223 1.4e-15 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 369
AccB1I GGYRCC 1 cut(s) 369
AciI CCGC 2 cut(s) 30, 246
AfaI GTAC 3 cut(s) 347, 371, 606
AfeI AGCGCT 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 135
AgsI TTSAA 4 cut(s) 424, 436, 645, 672
AjnI CCWGG 2 cut(s) 352, 394
AluBI AGCT 3 cut(s) 202, 514, 626
AluI AGCT 3 cut(s) 202, 514, 626
Alw21I GWGCWC 1 cut(s) 316
Alw44I GTGCAC 1 cut(s) 312
Aor51HI AGCGCT 1 cut(s) 212
AoxI GGCC 3 cut(s) 22, 222, 349
ApaLI GTGCAC 1 cut(s) 312
Asp718I GGTACC 1 cut(s) 369
AspLEI GCGC 1 cut(s) 213
AspS9I GGNCC 3 cut(s) 125, 350, 452
AsuC2I CCSGG 2 cut(s) 129, 184
AvaII GGWCC 2 cut(s) 125, 452
BaeGI GKGCMC 1 cut(s) 316
BanI GGYRCC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 660
Bbv12I GWGCWC 1 cut(s) 316
BccI CCATC 1 cut(s) 463
BceAI ACGGC 2 cut(s) 177, 364
BciT130I CCWGG 2 cut(s) 354, 396
BciVI GTATCC 1 cut(s) 567
BclI TGATCA 1 cut(s) 382
BcnI CCSGG 2 cut(s) 129, 184
BfoI RGCGCY 1 cut(s) 214
BfuI GTATCC 1 cut(s) 567
BlpI GCTNAGC 1 cut(s) 198
Bme1390I CCNGG 4 cut(s) 129, 184, 354, 396
Bme18I GGWCC 2 cut(s) 125, 452
BmgT120I GGNCC 3 cut(s) 125, 350, 452
BmiI GGNNCC 4 cut(s) 127, 140, 253, 371
BmrFI CCNGG 4 cut(s) 129, 184, 354, 396
BmsI GCATC 1 cut(s) 526
BpiI GAAGAC 1 cut(s) 660
BpmI CTGGAG 1 cut(s) 235
Bpu1102I GCTNAGC 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 264
BpuMI CCSGG 2 cut(s) 129, 184
BsaJI CCNNGG 5 cut(s) 25, 56, 183, 352, 395
BsaWI WCCGGW 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 135
Bse1I ACTGG 2 cut(s) 177, 373
BseBI CCWGG 2 cut(s) 354, 396
BseDI CCNNGG 5 cut(s) 25, 56, 183, 352, 395
BseGI GGATG 2 cut(s) 277, 327
BseLI CCNNNNNNNGG 1 cut(s) 135
BseMII CTCAG 3 cut(s) 212, 217, 281
BseNI ACTGG 2 cut(s) 177, 373
BseSI GKGCMC 1 cut(s) 316
BseYI CCCAGC 1 cut(s) 42
BshFI GGCC 3 cut(s) 24, 224, 351
BshNI GGYRCC 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 316
BsiSI CCGG 3 cut(s) 129, 136, 183
BslFI GGGAC 2 cut(s) 59, 200
BslI CCNNNNNNNGG 1 cut(s) 135
BsmFI GGGAC 2 cut(s) 59, 200
BsnI GGCC 3 cut(s) 24, 224, 351
Bsp1286I GDGCHC 1 cut(s) 316
Bsp143I GATC 1 cut(s) 382
Bsp1720I GCTNAGC 1 cut(s) 198
Bsp19I CCATGG 1 cut(s) 25
BspACI CCGC 2 cut(s) 30, 246
BspANI GGCC 3 cut(s) 24, 224, 351
BspCNI CTCAG 3 cut(s) 211, 216, 280
BspLI GGNNCC 4 cut(s) 127, 140, 253, 371
BspQI GCTCTTC 1 cut(s) 546
BspT107I GGYRCC 1 cut(s) 369
BsrI ACTGG 2 cut(s) 177, 373
BssECI CCNNGG 5 cut(s) 25, 56, 183, 352, 395
BssMI GATC 1 cut(s) 382
BssT1I CCWWGG 2 cut(s) 25, 56
Bst2UI CCWGG 2 cut(s) 354, 396
Bst4CI ACNGT 2 cut(s) 406, 530
Bst6I CTCTTC 2 cut(s) 57, 546
BstC8I GCNNGC 3 cut(s) 153, 166, 615
BstDEI CTNAG 3 cut(s) 198, 203, 267
BstDSI CCRYGG 1 cut(s) 25
BstF5I GGATG 2 cut(s) 277, 327
BstH2I RGCGCY 1 cut(s) 214
BstHHI GCGC 1 cut(s) 213
BstKTI GATC 1 cut(s) 385
BstMBI GATC 1 cut(s) 382
BstMWI GCNNNNNNNGC 3 cut(s) 161, 208, 623
BstNI CCWGG 2 cut(s) 354, 396
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 4 cut(s) 127, 182, 352, 394
BstSLI GKGCMC 1 cut(s) 316
BstV2I GAAGAC 1 cut(s) 660
BstXI CCANNNNNNTGG 1 cut(s) 109
BsuI GTATCC 1 cut(s) 567
BsuRI GGCC 3 cut(s) 24, 224, 351
BtgI CCRYGG 1 cut(s) 25
BtsCI GGATG 2 cut(s) 277, 327
BtsI GCAGTG 1 cut(s) 162
BtsIMutI CAGTG 2 cut(s) 162, 170
Cac8I GCNNGC 3 cut(s) 153, 166, 615
CfoI GCGC 1 cut(s) 213
Cfr13I GGNCC 3 cut(s) 125, 350, 452
Csp6I GTAC 3 cut(s) 346, 370, 605
CviAII CATG 5 cut(s) 5, 26, 386, 480, 631
CviQI GTAC 3 cut(s) 346, 370, 605
DdeI CTNAG 3 cut(s) 198, 203, 267
DpnI GATC 1 cut(s) 384
DpnII GATC 1 cut(s) 382
Eam1104I CTCTTC 2 cut(s) 57, 546
EarI CTCTTC 2 cut(s) 57, 546
Eco130I CCWWGG 2 cut(s) 25, 56
Eco47I GGWCC 2 cut(s) 125, 452
Eco47III AGCGCT 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 125
EcoRII CCWGG 2 cut(s) 352, 394
EcoT14I CCWWGG 2 cut(s) 25, 56
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 25, 56
FaeI CATG 5 cut(s) 8, 29, 389, 483, 634
FalI AAGNNNNNCTT 4 cut(s) 432, 464, 525, 557
FaqI GGGAC 2 cut(s) 59, 200
FatI CATG 5 cut(s) 4, 25, 385, 479, 630
FauI CCCGC 1 cut(s) 23
FauNDI CATATG 1 cut(s) 361
FbaI TGATCA 1 cut(s) 382
FokI GGATG 2 cut(s) 284, 334
GlaI GCGC 1 cut(s) 212
GsaI CCCAGC 1 cut(s) 46
GsuI CTGGAG 1 cut(s) 235
HaeII RGCGCY 1 cut(s) 214
HaeIII GGCC 3 cut(s) 24, 224, 351
HapII CCGG 3 cut(s) 129, 136, 183
HhaI GCGC 1 cut(s) 213
Hin1II CATG 5 cut(s) 8, 29, 389, 483, 634
Hin6I GCGC 1 cut(s) 211
HinP1I GCGC 1 cut(s) 211
HincII GTYRAC 1 cut(s) 412
HindII GTYRAC 1 cut(s) 412
HinfI GANTC 3 cut(s) 47, 84, 89
HpaII CCGG 3 cut(s) 129, 136, 183
Hpy166II GTNNAC 2 cut(s) 314, 412
Hpy188I TCNGA 3 cut(s) 206, 295, 321
Hpy188III TCNNGA 5 cut(s) 269, 380, 518, 571, 652
Hpy8I GTNNAC 2 cut(s) 314, 412
HpyAV CCTTC 1 cut(s) 418
HpyCH4III ACNGT 2 cut(s) 406, 530
HpyCH4V TGCA 4 cut(s) 4, 314, 479, 613
HpyF10VI GCNNNNNNNGC 3 cut(s) 161, 208, 623
HpyF3I CTNAG 3 cut(s) 198, 203, 267
Hsp92II CATG 5 cut(s) 8, 29, 389, 483, 634
HspAI GCGC 1 cut(s) 211
KpnI GGTACC 1 cut(s) 373
Ksp22I TGATCA 1 cut(s) 382
Kzo9I GATC 1 cut(s) 382
LguI GCTCTTC 1 cut(s) 546
LmnI GCTCC 1 cut(s) 257
LweI GCATC 1 cut(s) 526
MaeIII GTNAC 2 cut(s) 157, 274
MalI GATC 1 cut(s) 384
MboI GATC 1 cut(s) 382
MboII GAAGA 3 cut(s) 44, 533, 660
MfeI CAATTG 1 cut(s) 192
MhlI GDGCHC 1 cut(s) 316
MluCI AATT 3 cut(s) 103, 192, 487
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 7 cut(s) 8, 14, 106, 109, 116, 274, 618
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 2 cut(s) 146, 590
MslI CAYNNNNRTG 1 cut(s) 635
MspI CCGG 3 cut(s) 129, 136, 183
MspR9I CCNGG 4 cut(s) 129, 184, 354, 396
MunI CAATTG 1 cut(s) 192
MvaI CCWGG 2 cut(s) 354, 396
MwoI GCNNNNNNNGC 3 cut(s) 161, 208, 623
NciI CCSGG 2 cut(s) 129, 184
NcoI CCATGG 1 cut(s) 25
NdeI CATATG 1 cut(s) 361
NdeII GATC 1 cut(s) 382
NlaIII CATG 5 cut(s) 8, 29, 389, 483, 634
NlaIV GGNNCC 4 cut(s) 127, 140, 253, 371
NmuCI GTSAC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PciSI GCTCTTC 1 cut(s) 546
PfeI GAWTC 2 cut(s) 84, 89
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PpuMI RGGWCCY 1 cut(s) 125
Psp5II RGGWCCY 1 cut(s) 125
Psp6I CCWGG 2 cut(s) 352, 394
PspFI CCCAGC 1 cut(s) 42
PspGI CCWGG 2 cut(s) 352, 394
PspN4I GGNNCC 4 cut(s) 127, 140, 253, 371
PspPI GGNCC 3 cut(s) 125, 350, 452
PspPPI RGGWCCY 1 cut(s) 125
RsaI GTAC 3 cut(s) 347, 371, 606
RsaNI GTAC 3 cut(s) 346, 370, 605
RseI CAYNNNNRTG 1 cut(s) 635
SapI GCTCTTC 1 cut(s) 546
SaqAI TTAA 2 cut(s) 146, 590
Sau3AI GATC 1 cut(s) 382
Sau96I GGNCC 3 cut(s) 125, 350, 452
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 4 cut(s) 129, 184, 354, 396
SduI GDGCHC 1 cut(s) 316
SetI ASST 9 cut(s) 19, 204, 266, 417, 429, 516, 569, 610, 628
SfaNI GCATC 1 cut(s) 526
SinI GGWCC 2 cut(s) 125, 452
SmiMI CAYNNNNRTG 1 cut(s) 635
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
Sse9I AATT 3 cut(s) 103, 192, 487
SsiI CCGC 2 cut(s) 30, 246
SspI AATATT 1 cut(s) 648
StyD4I CCNGG 4 cut(s) 127, 182, 352, 394
StyI CCWWGG 2 cut(s) 25, 56
TaaI ACNGT 2 cut(s) 406, 530
TaqI TCGA 1 cut(s) 87
TasI AATT 3 cut(s) 103, 192, 487
TfiI GAWTC 2 cut(s) 84, 89
Tru1I TTAA 2 cut(s) 146, 590
Tru9I TTAA 2 cut(s) 146, 590
TscAI CASTG 2 cut(s) 162, 177
TseFI GTSAC 1 cut(s) 157
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 619
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 2 cut(s) 162, 177
VneI GTGCAC 1 cut(s) 312
VpaK11BI GGWCC 2 cut(s) 125, 452
XceI RCATGY 1 cut(s) 8
XcmI CCANNNNNNNNNTGG 2 cut(s) 245, 446
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.