Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011150

Physical Location & Seq

Genomic Coordinates Reverse (-)

32624677 .. 32625338

Gene Structure 662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0295000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCTGCTAATTATAAATGGCTATGCAGAGGTTATATGGCCCCAGAGTATCTTGTTCAAGGGCAACTTACAGAGAAAGAAGACGTTAATTTATAGCTTCGGAGTGCTAGTTCTCGAGATTGTGTCTGGTATGAGGAATAGCACCTTCAAACAGGCGGACACTGACTTTGATTCACTACTACACAAAGTTTGGAAACACTACAGATCAAACAAGTTGGCCGACGTGGTTGATCCTTGCTTGAGAGATCATGAGTTGCCAGCAAAAGAGGTATCAAATGTTCTTCAAATTGGACTTCTGTGCACACAGGCCTCAGTTGCTTTGAGACCATCTATGGCTGAAGTAGTTCTAATGCTAACAGCCAACAAAGAAAGTGACATTCCCATTCCAAACCAACCTCCCTTTCTAAATGCCACGACGCTAGAGCAAGCCAGGTCCATTAGGTCTAATAGCGCAAACAGCTTCGTCTCAAATACTTTAACGAAAGTTGAGATGTCCTACACCTCATCAGAGTCTTCCACCACGCCTAGTTTGGATAATATGGGACATATATCAACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0009987 GO:0030154 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0044424 GO:0044444 GO:0044464 GO:0048066 GO:0048869 GO:0050896 GO:0050931 GO:0050935 GO:0051716 GO:0070887 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

186

Amino Acids

20.67

Weight (kDa)

7.79

Isoelectric Point (pI)

50.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42770
fragaria_vesca	FvH4_6g27820 FvH4_6g27820
malus_domestica	MD09G1234300.v1.1 MD17G1263400.v1.1
prunus_persica	Prupe.3G112500_v2.0.a1 Prupe.3G112500_v2.0.a1 Prupe.3G112500_v2.0.a1
pyrus_communis	pycom17g26360
rosa_chinensis	RchiOBHm_Chr2g0131101
rosa_laevigata	RLG00000019167
rosa_multiflora	Rmu_sc0003629.1_g000065 Rmu_sc0034784.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113200
rosa_rugosa	Rorug02G0295000
rosa_samantha	Rh2AG347300 Rh2BG354800 Rh2CG333500 Rh2DG372700
rosa_wichuraiana	Rw2G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	14
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	357
AgsI	TTSAA	3 cut(s)	58, 148, 284
AjiI	CACGTC	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	428
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
AloI	GAACNNNNNNTCC	2 cut(s)	93, 125
AluBI	AGCT	2 cut(s)	96, 459
AluI	AGCT	2 cut(s)	96, 459
Alw21I	GWGCWC	1 cut(s)	302
Alw26I	GTCTC	2 cut(s)	316, 469
Alw44I	GTGCAC	1 cut(s)	298
AlwI	GGATC	1 cut(s)	224
Ama87I	CYCGRG	1 cut(s)	113
AoxI	GGCC	3 cut(s)	38, 216, 306
ApaLI	GTGCAC	1 cut(s)	298
ApeKI	GCWGC	1 cut(s)	4
ArsI	GACNNNNNNTTYG	2 cut(s)	149, 181
Asp700I	GAANNNNTTC	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	452
AspS9I	GGNCC	2 cut(s)	39, 432
AvaI	CYCGRG	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	432
BaeGI	GKGCMC	1 cut(s)	302
BbsI	GAAGAC	2 cut(s)	86, 504
Bbv12I	GWGCWC	1 cut(s)	302
BccI	CCATC	1 cut(s)	334
BciT130I	CCWGG	1 cut(s)	430
BcoDI	GTCTC	2 cut(s)	316, 469
BfaI	CTAG	3 cut(s)	107, 419, 525
BfmI	CTRYAG	1 cut(s)	199
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	430
Bme18I	GGWCC	1 cut(s)	432
BmeT110I	CYCGRG	1 cut(s)	113
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	2 cut(s)	39, 432
BmiI	GGNNCC	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	430
BpiI	GAAGAC	2 cut(s)	86, 504
BpuEI	CTTGAG	1 cut(s)	259
BsaI	GGTCTC	1 cut(s)	316
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
BseBI	CCWGG	1 cut(s)	430
BseMII	CTCAG	1 cut(s)	324
BseSI	GKGCMC	1 cut(s)	302
BshFI	GGCC	3 cut(s)	40, 218, 308
BsiHKAI	GWGCWC	1 cut(s)	302
BsiHKCI	CYCGRG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	555
BsmAI	GTCTC	2 cut(s)	316, 469
BsmBI	CGTCTC	1 cut(s)	469
BsmFI	GGGAC	1 cut(s)	555
BsnI	GGCC	3 cut(s)	40, 218, 308
Bso31I	GGTCTC	1 cut(s)	316
BsoBI	CYCGRG	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	3 cut(s)	203, 229, 244
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	3 cut(s)	40, 218, 308
BspCNI	CTCAG	1 cut(s)	323
BspHI	TCATGA	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	41
BspPI	GGATC	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	316
BssMI	GATC	3 cut(s)	203, 229, 244
Bst2UI	CCWGG	1 cut(s)	430
BstC8I	GCNNGC	2 cut(s)	258, 426
BstDEI	CTNAG	1 cut(s)	310
BstHHI	GCGC	1 cut(s)	452
BstKTI	GATC	3 cut(s)	206, 232, 247
BstMAI	GTCTC	2 cut(s)	316, 469
BstMBI	GATC	3 cut(s)	203, 229, 244
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 456
BstNI	CCWGG	1 cut(s)	430
BstSCI	CCNGG	1 cut(s)	428
BstSFI	CTRYAG	1 cut(s)	199
BstSLI	GKGCMC	1 cut(s)	302
BstV2I	GAAGAC	2 cut(s)	86, 504
BsuRI	GGCC	3 cut(s)	40, 218, 308
BtrI	CACGTC	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	2 cut(s)	258, 426
CciI	TCATGA	1 cut(s)	247
CfoI	GCGC	1 cut(s)	452
Cfr13I	GGNCC	2 cut(s)	39, 432
CseI	GACGC	1 cut(s)	424
CviAII	CATG	1 cut(s)	248
CviJI	RGCY	9 cut(s)	21, 40, 96, 218, 308, 335, 359, 428, 459
CviKI_1	RGCY	9 cut(s)	21, 40, 96, 218, 308, 335, 359, 428, 459
DdeI	CTNAG	1 cut(s)	310
DpnI	GATC	3 cut(s)	205, 231, 246
DpnII	GATC	3 cut(s)	203, 229, 244
EaeI	YGGCCR	1 cut(s)	216
EciI	GGCGGA	1 cut(s)	170
Eco147I	AGGCCT	1 cut(s)	308
Eco31I	GGTCTC	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	432
Eco57I	CTGAAG	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	428
Esp3I	CGTCTC	1 cut(s)	469
FaeI	CATG	1 cut(s)	251
FalI	AAGNNNNNCTT	2 cut(s)	50, 82
FaqI	GGGAC	1 cut(s)	555
FatI	CATG	1 cut(s)	247
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	3 cut(s)	107, 419, 525
GlaI	GCGC	1 cut(s)	451
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	3 cut(s)	40, 218, 308
HgaI	GACGC	1 cut(s)	424
HhaI	GCGC	1 cut(s)	452
Hin1II	CATG	1 cut(s)	251
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HinfI	GANTC	2 cut(s)	170, 509
Hpy166II	GTNNAC	1 cut(s)	300
Hpy188I	TCNGA	2 cut(s)	101, 508
Hpy188III	TCNNGA	3 cut(s)	113, 115, 248
Hpy8I	GTNNAC	1 cut(s)	300
Hpy99I	CGWCG	2 cut(s)	224, 418
HpyAV	CCTTC	1 cut(s)	154
HpyCH4IV	ACGT	2 cut(s)	83, 222
HpyCH4V	TGCA	2 cut(s)	26, 300
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 456
HpyF3I	CTNAG	1 cut(s)	310
HpySE526I	ACGT	2 cut(s)	83, 222
Hsp92II	CATG	1 cut(s)	251
HspAI	GCGC	1 cut(s)	450
Kzo9I	GATC	3 cut(s)	203, 229, 244
LpnPI	CCDG	7 cut(s)	56, 111, 137, 270, 290, 415, 442
MaeI	CTAG	3 cut(s)	107, 419, 525
MaeII	ACGT	2 cut(s)	83, 222
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	3 cut(s)	205, 231, 246
MboI	GATC	3 cut(s)	203, 229, 244
MboII	GAAGA	3 cut(s)	91, 272, 504
MhlI	GDGCHC	1 cut(s)	302
MluCI	AATT	3 cut(s)	9, 87, 285
MlyI	GAGTC	1 cut(s)	518
MnlI	CCTC	6 cut(s)	22, 126, 259, 319, 405, 511
MroXI	GAANNNNTTC	1 cut(s)	342
MseI	TTAA	2 cut(s)	86, 476
MspR9I	CCNGG	1 cut(s)	430
MvaI	CCWGG	1 cut(s)	430
MwoI	GCNNNNNNNGC	2 cut(s)	314, 456
NdeII	GATC	3 cut(s)	203, 229, 244
NlaIII	CATG	1 cut(s)	251
NlaIV	GGNNCC	1 cut(s)	41
NmuCI	GTSAC	1 cut(s)	371
PaeR7I	CTCGAG	1 cut(s)	113
PagI	TCATGA	1 cut(s)	247
PceI	AGGCCT	1 cut(s)	308
PdmI	GAANNNNTTC	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	170
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PsiI	TTATAA	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	428
PspGI	CCWGG	1 cut(s)	428
PspN4I	GGNNCC	1 cut(s)	41
PspPI	GGNCC	2 cut(s)	39, 432
PsrI	GAACNNNNNNTAC	2 cut(s)	261, 293
SaqAI	TTAA	2 cut(s)	86, 476
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	3 cut(s)	203, 229, 244
Sau96I	GGNCC	2 cut(s)	39, 432
SchI	GAGTC	1 cut(s)	518
ScrFI	CCNGG	1 cut(s)	430
SduI	GDGCHC	1 cut(s)	302
SfcI	CTRYAG	1 cut(s)	199
Sfr274I	CTCGAG	1 cut(s)	113
SinI	GGWCC	1 cut(s)	432
SlaI	CTCGAG	1 cut(s)	113
SmlI	CTYRAG	2 cut(s)	113, 238
SmoI	CTYRAG	2 cut(s)	113, 238
Sse9I	AATT	3 cut(s)	9, 87, 285
SseBI	AGGCCT	1 cut(s)	308
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	3 cut(s)	107, 419, 525
StuI	AGGCCT	1 cut(s)	308
StyD4I	CCNGG	1 cut(s)	428
TaiI	ACGT	2 cut(s)	86, 225
TaqI	TCGA	1 cut(s)	114
TasI	AATT	3 cut(s)	9, 87, 285
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	2 cut(s)	86, 476
Tru9I	TTAA	2 cut(s)	86, 476
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	371
TspRI	CASTG	1 cut(s)	166
VneI	GTGCAC	1 cut(s)	298
VpaK11BI	GGWCC	1 cut(s)	432
XcmI	CCANNNNNNNNNTGG	1 cut(s)	526
XhoI	CTCGAG	1 cut(s)	113
XmnI	GAANNNNTTC	1 cut(s)	342
XspI	CTAG	3 cut(s)	107, 419, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.