Rw2G028200

Belongs to the peroxisomal membrane protein PXMP2 4 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0011150
Physical Location & Seq
Reverse (-)
44967466 .. 44969919
2454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G028200.1

Sequence Viewer

Length: 645 bp
ATGCATGTTCTTGGAGGTGGAGGCCATGGCGGGTTTTGGGGTTGGGACTCTCTACCAAAGAAACCCAAACAACAAAGAAAGCGATTCGATTCCAAATCCTCCAATTCTCAAGCAGTGACGGCTGGCTCACTGGCTCTAACCGGAGACACAATTGCTCAGCTCATAGAGCGCTGGAGAAAGGCCAAGACTTTAGACCAACAAAGCAGCGGCTCCACACCCACCTCTCAGGATGTTACTCAAGTTCTCTTATCAGACCACGATTGGCTTCGTGCACTTCGGATGACTTCCTACGGGTTTCTGTTGTACGGCCCTGGCTCATATGCTTGGTACCAGTATCTTGATTATGCTTTGCCAGAGAAAACAGTAGTGAACCTTTTGTTGAAGGTTTTATTGAACCAAGTTGTGCTTGGTCCATCTGTGATTGCTGTTGTTTTTGCATGGAACAATTTATGGCAAGGGAAACTCTCACAGCTTCCAGATAAATACCGTAAAGATGCTCTTCCCACATTACTTTATGGATTTAGGTTCTGGATACCCGTCAGTCTATTAAACTTCTGGGTTGTACCTCTTCAAGCCCGTGTAGCTTTCATGTGTGTGGGTTCAATATTCTGGAACTTCTGCTTGTCTTCAACAATGAGCAAGTAA

Protein Analysis

214

Amino Acids

24.11

Weight (kDa)

9.72

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mpv17_PMP22 PF04117 150 - 209 1.2e-15 Mpv17 / PMP22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 327
AccB1I GGYRCC 1 cut(s) 327
AciI CCGC 2 cut(s) 30, 207
AfaI GTAC 3 cut(s) 305, 329, 564
AfeI AGCGCT 1 cut(s) 170
AgsI TTSAA 5 cut(s) 382, 394, 572, 603, 630
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 3 cut(s) 160, 472, 584
AluI AGCT 3 cut(s) 160, 472, 584
Alw21I GWGCWC 1 cut(s) 274
Alw26I GTCTC 1 cut(s) 138
Alw44I GTGCAC 1 cut(s) 270
Aor51HI AGCGCT 1 cut(s) 170
AoxI GGCC 3 cut(s) 22, 180, 307
ApaLI GTGCAC 1 cut(s) 270
ApeKI GCWGC 1 cut(s) 204
Asp718I GGTACC 1 cut(s) 327
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 2 cut(s) 308, 410
AvaII GGWCC 1 cut(s) 410
BaeGI GKGCMC 1 cut(s) 274
BanI GGYRCC 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 618
Bbv12I GWGCWC 1 cut(s) 274
BbvI GCAGC 1 cut(s) 216
BccI CCATC 1 cut(s) 421
BceAI ACGGC 2 cut(s) 135, 322
BciT130I CCWGG 1 cut(s) 312
BciVI GTATCC 1 cut(s) 525
BcoDI GTCTC 1 cut(s) 138
BfoI RGCGCY 1 cut(s) 172
BfuI GTATCC 1 cut(s) 525
BisI GCNGC 2 cut(s) 205, 208
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 2 cut(s) 206, 209
Bme1390I CCNGG 1 cut(s) 312
Bme18I GGWCC 1 cut(s) 410
BmgT120I GGNCC 2 cut(s) 308, 410
BmiI GGNNCC 2 cut(s) 211, 329
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 1 cut(s) 484
BpiI GAAGAC 1 cut(s) 618
BpmI CTGGAG 1 cut(s) 193
Bpu1102I GCTNAGC 1 cut(s) 156
BpuEI CTTGAG 2 cut(s) 93, 222
BsaJI CCNNGG 2 cut(s) 25, 310
BsaWI WCCGGW 1 cut(s) 140
Bse1I ACTGG 2 cut(s) 135, 331
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 25, 310
BseGI GGATG 2 cut(s) 235, 285
BseMII CTCAG 2 cut(s) 170, 239
BseNI ACTGG 2 cut(s) 135, 331
BseSI GKGCMC 1 cut(s) 274
BseXI GCAGC 1 cut(s) 216
BshFI GGCC 3 cut(s) 24, 182, 309
BshNI GGYRCC 1 cut(s) 327
BsiHKAI GWGCWC 1 cut(s) 274
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 138
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 3 cut(s) 24, 182, 309
Bsp1286I GDGCHC 1 cut(s) 274
Bsp1720I GCTNAGC 1 cut(s) 156
Bsp19I CCATGG 1 cut(s) 25
BspACI CCGC 2 cut(s) 30, 207
BspANI GGCC 3 cut(s) 24, 182, 309
BspCNI CTCAG 2 cut(s) 169, 238
BspLI GGNNCC 2 cut(s) 211, 329
BspQI GCTCTTC 1 cut(s) 504
BspT107I GGYRCC 1 cut(s) 327
BsrI ACTGG 2 cut(s) 135, 331
BssECI CCNNGG 2 cut(s) 25, 310
BssT1I CCWWGG 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 2 cut(s) 364, 488
Bst6I CTCTTC 2 cut(s) 504, 573
BstC8I GCNNGC 1 cut(s) 124
BstDEI CTNAG 2 cut(s) 156, 225
BstDSI CCRYGG 1 cut(s) 25
BstF5I GGATG 2 cut(s) 235, 285
BstH2I RGCGCY 1 cut(s) 172
BstHHI GCGC 1 cut(s) 171
BstMAI GTCTC 1 cut(s) 138
BstMWI GCNNNNNNNGC 3 cut(s) 119, 166, 581
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 1 cut(s) 8
BstSCI CCNGG 1 cut(s) 310
BstSLI GKGCMC 1 cut(s) 274
BstV1I GCAGC 1 cut(s) 216
BstV2I GAAGAC 1 cut(s) 618
BsuI GTATCC 1 cut(s) 525
BsuRI GGCC 3 cut(s) 24, 182, 309
BtgI CCRYGG 1 cut(s) 25
BtsCI GGATG 2 cut(s) 235, 285
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 2 cut(s) 120, 128
Cac8I GCNNGC 1 cut(s) 124
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 2 cut(s) 308, 410
Csp6I GTAC 3 cut(s) 304, 328, 563
CviAII CATG 4 cut(s) 5, 26, 438, 589
CviQI GTAC 3 cut(s) 304, 328, 563
DdeI CTNAG 2 cut(s) 156, 225
Eam1104I CTCTTC 2 cut(s) 504, 573
EarI CTCTTC 2 cut(s) 504, 573
Eco130I CCWWGG 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 410
Eco47III AGCGCT 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 25
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 4 cut(s) 8, 29, 441, 592
FalI AAGNNNNNCTT 4 cut(s) 390, 422, 483, 515
FaqI GGGAC 1 cut(s) 59
FatI CATG 4 cut(s) 4, 25, 437, 588
FauI CCCGC 1 cut(s) 23
FauNDI CATATG 1 cut(s) 319
Fnu4HI GCNGC 2 cut(s) 205, 208
FokI GGATG 2 cut(s) 242, 292
Fsp4HI GCNGC 2 cut(s) 205, 208
GlaI GCGC 1 cut(s) 170
GluI GCNGC 2 cut(s) 205, 208
GsuI CTGGAG 1 cut(s) 193
HaeII RGCGCY 1 cut(s) 172
HaeIII GGCC 3 cut(s) 24, 182, 309
HapII CCGG 1 cut(s) 141
HhaI GCGC 1 cut(s) 171
Hin1II CATG 4 cut(s) 8, 29, 441, 592
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HinfI GANTC 3 cut(s) 47, 84, 89
HpaII CCGG 1 cut(s) 141
Hpy166II GTNNAC 2 cut(s) 272, 370
Hpy188I TCNGA 2 cut(s) 253, 279
Hpy188III TCNNGA 5 cut(s) 227, 338, 476, 529, 610
Hpy8I GTNNAC 2 cut(s) 272, 370
HpyAV CCTTC 1 cut(s) 376
HpyCH4III ACNGT 2 cut(s) 364, 488
HpyCH4V TGCA 3 cut(s) 4, 272, 437
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 166, 581
HpyF3I CTNAG 2 cut(s) 156, 225
Hsp92II CATG 4 cut(s) 8, 29, 441, 592
HspAI GCGC 1 cut(s) 169
KpnI GGTACC 1 cut(s) 331
LguI GCTCTTC 1 cut(s) 504
LmnI GCTCC 1 cut(s) 215
Lsp1109I GCAGC 1 cut(s) 216
LweI GCATC 1 cut(s) 484
MaeIII GTNAC 2 cut(s) 115, 232
MboII GAAGA 3 cut(s) 491, 560, 618
MfeI CAATTG 1 cut(s) 150
MhlI GDGCHC 1 cut(s) 274
MluCI AATT 3 cut(s) 103, 150, 445
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 5 cut(s) 8, 14, 109, 232, 576
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 548
MslI CAYNNNNRTG 1 cut(s) 593
MspA1I CMGCKG 1 cut(s) 207
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 312
MunI CAATTG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 3 cut(s) 119, 166, 581
NcoI CCATGG 1 cut(s) 25
NdeI CATATG 1 cut(s) 319
NlaIII CATG 4 cut(s) 8, 29, 441, 592
NlaIV GGNNCC 2 cut(s) 211, 329
NmuCI GTSAC 1 cut(s) 115
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 8
PciSI GCTCTTC 1 cut(s) 504
PfeI GAWTC 2 cut(s) 84, 89
PkrI GCNGC 2 cut(s) 206, 209
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 2 cut(s) 211, 329
PspPI GGNCC 2 cut(s) 308, 410
RsaI GTAC 3 cut(s) 305, 329, 564
RsaNI GTAC 3 cut(s) 304, 328, 563
RseI CAYNNNNRTG 1 cut(s) 593
SapI GCTCTTC 1 cut(s) 504
SaqAI TTAA 1 cut(s) 548
SatI GCNGC 2 cut(s) 205, 208
Sau96I GGNCC 2 cut(s) 308, 410
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 1 cut(s) 274
SetI ASST 9 cut(s) 19, 162, 224, 375, 387, 474, 527, 568, 586
SfaNI GCATC 1 cut(s) 484
SinI GGWCC 1 cut(s) 410
SmiMI CAYNNNNRTG 1 cut(s) 593
SmlI CTYRAG 2 cut(s) 108, 237
SmoI CTYRAG 2 cut(s) 108, 237
Sse9I AATT 3 cut(s) 103, 150, 445
SsiI CCGC 2 cut(s) 30, 207
SspI AATATT 1 cut(s) 606
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 2 cut(s) 364, 488
TaqI TCGA 1 cut(s) 87
TasI AATT 3 cut(s) 103, 150, 445
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 2 cut(s) 84, 89
Tru1I TTAA 1 cut(s) 548
Tru9I TTAA 1 cut(s) 548
TscAI CASTG 2 cut(s) 120, 135
TseFI GTSAC 1 cut(s) 115
TseI GCWGC 1 cut(s) 204
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 1 cut(s) 577
TspRI CASTG 2 cut(s) 120, 135
VneI GTGCAC 1 cut(s) 270
VpaK11BI GGWCC 1 cut(s) 410
XceI RCATGY 1 cut(s) 8
XcmI CCANNNNNNNNNTGG 1 cut(s) 404
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.