Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0011150

Physical Location & Seq

Genomic Coordinates Reverse (-)

47627326 .. 47630012

Gene Structure 2687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019167

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGCATGTTCTTGGAGGTGGAGGCCATGGCTGGTTTTGGGGTTGGGACTCTCTGCCAAAGAAACCCAAACAACAAAGAAAGCGATTCGATTCCAAATCCTCCAATTCTGTCGAGGCAGACGGAGGCCCCGGTTTCCGGTTCCCGTTACAGCAAGCAGTGACGGCTGGCTCACTGGCTCTAACCGGAGACACAATTGCTCAGCTCAGAGAGCGCTGGAGAAAGGCCAAGACTTTAGACCAACAAAGCAGCTGCTCCACACCCACCTCTCAGGATGTTACTCAAGTTCTCTTATCAGACCATGATTGGCTTCGTGCACTTCGGATGACTTCCTATGGGTTTCTGTTGTACGGCCCTGGCTCATATGCTTGGTACCAGTATCTTGATCATGCTTTGCCAGGGAAAACAGTAGTGAACCTTTTGTTGAAGGTTTTATTGAACCAAGTTGTGCTTGGTCCATCTGTGATTGCTGTTGTTTTTGCATGGAACAATTTATGGCAAGGGAAACTCTCACAGCTTCCAGATAAATACCGTAAAGATGCTCTTCCCACATTACTTTATGGATTTAGGTTCTGGATACCCGTCAGTCTATTAAACTTCTGCAACCAGAACTTTGATTACAAGGTACCAGCAAATGTCCCGAAGAAATTGGTGGACTTCATGTGCAGAAGAAATTTCCAGAAGCAACTTCTTAATGCAGTTGGTTTCAAGTTTAGAGATGATTGTAAAACCTTGGACCTAGTGAGCAGTGAATCAATTCTATTCTACTGGTCCAGAAAGAGTGCAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0009987 GO:0030154 GO:0032502 GO:0033554 GO:0034599 GO:0034614 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043473 GO:0044424 GO:0044444 GO:0044464 GO:0048066 GO:0048869 GO:0050896 GO:0050931 GO:0050935 GO:0051716 GO:0070887 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04146 map04146

Pfam Domains

Protein Families

Mpv17_PMP22

Protein Analysis

263

Amino Acids

29.83

Weight (kDa)

9.65

Isoelectric Point (pI)

38.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011150)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42770
fragaria_vesca	FvH4_6g27820 FvH4_6g27820
malus_domestica	MD09G1234300.v1.1 MD17G1263400.v1.1
prunus_persica	Prupe.3G112500_v2.0.a1 Prupe.3G112500_v2.0.a1 Prupe.3G112500_v2.0.a1
pyrus_communis	pycom17g26360
rosa_chinensis	RchiOBHm_Chr2g0131101
rosa_laevigata	RLG00000019167
rosa_multiflora	Rmu_sc0003629.1_g000065 Rmu_sc0034784.1_g000001
rosa_roxburghii	Rroxscaffold_2G00113200
rosa_rugosa	Rorug02G0295000
rosa_samantha	Rh2AG347300 Rh2BG354800 Rh2CG333500 Rh2DG372700
rosa_wichuraiana	Rw2G028200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	369, 622
AccB1I	GGYRCC	2 cut(s)	369, 622
AcsI	RAATTY	1 cut(s)	670
AfaI	GTAC	3 cut(s)	347, 371, 624
AfeI	AGCGCT	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	135
AgsI	TTSAA	3 cut(s)	424, 436, 706
AjnI	CCWGG	2 cut(s)	352, 394
AluBI	AGCT	3 cut(s)	202, 249, 514
AluI	AGCT	3 cut(s)	202, 249, 514
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	1 cut(s)	180
Alw44I	GTGCAC	1 cut(s)	312
Aor51HI	AGCGCT	1 cut(s)	212
AoxI	GGCC	4 cut(s)	22, 124, 222, 349
ApaLI	GTGCAC	1 cut(s)	312
ApeKI	GCWGC	2 cut(s)	246, 249
ApoI	RAATTY	1 cut(s)	670
Asp700I	GAANNNNTTC	1 cut(s)	753
Asp718I	GGTACC	2 cut(s)	369, 622
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	5 cut(s)	125, 350, 452, 733, 768
AsuC2I	CCSGG	1 cut(s)	129
AvaII	GGWCC	3 cut(s)	452, 733, 768
BaeGI	GKGCMC	1 cut(s)	316
BanI	GGYRCC	2 cut(s)	369, 622
Bbv12I	GWGCWC	1 cut(s)	316
BbvI	GCAGC	2 cut(s)	236, 258
BccI	CCATC	1 cut(s)	463
BceAI	ACGGC	2 cut(s)	177, 364
BciT130I	CCWGG	2 cut(s)	354, 396
BciVI	GTATCC	1 cut(s)	567
BclI	TGATCA	1 cut(s)	382
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	180
BfaI	CTAG	1 cut(s)	737
BfoI	RGCGCY	1 cut(s)	214
BfuI	GTATCC	1 cut(s)	567
BisI	GCNGC	2 cut(s)	247, 250
BlpI	GCTNAGC	1 cut(s)	198
BlsI	GCNGC	2 cut(s)	248, 251
Bme1390I	CCNGG	3 cut(s)	129, 354, 396
Bme18I	GGWCC	3 cut(s)	452, 733, 768
BmgT120I	GGNCC	5 cut(s)	125, 350, 452, 733, 768
BmiI	GGNNCC	4 cut(s)	127, 140, 371, 624
BmrFI	CCNGG	3 cut(s)	129, 354, 396
BmsI	GCATC	1 cut(s)	526
BpmI	CTGGAG	1 cut(s)	235
Bpu1102I	GCTNAGC	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	129
BsaJI	CCNNGG	5 cut(s)	25, 127, 352, 395, 729
BsaWI	WCCGGW	2 cut(s)	135, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	3 cut(s)	177, 373, 770
BseBI	CCWGG	2 cut(s)	354, 396
BseDI	CCNNGG	5 cut(s)	25, 127, 352, 395, 729
BseGI	GGATG	2 cut(s)	277, 327
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMII	CTCAG	3 cut(s)	212, 217, 281
BseNI	ACTGG	3 cut(s)	177, 373, 770
BseSI	GKGCMC	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	236, 258
BsgI	GTGCAG	1 cut(s)	682
BshFI	GGCC	4 cut(s)	24, 126, 224, 351
BshNI	GGYRCC	2 cut(s)	369, 622
BsiHKAI	GWGCWC	1 cut(s)	316
BsiSI	CCGG	3 cut(s)	129, 136, 183
BslFI	GGGAC	2 cut(s)	59, 620
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	1 cut(s)	180
BsmFI	GGGAC	2 cut(s)	59, 620
BsnI	GGCC	4 cut(s)	24, 126, 224, 351
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	1 cut(s)	382
Bsp1720I	GCTNAGC	1 cut(s)	198
Bsp19I	CCATGG	1 cut(s)	25
BspANI	GGCC	4 cut(s)	24, 126, 224, 351
BspCNI	CTCAG	3 cut(s)	211, 216, 280
BspLI	GGNNCC	4 cut(s)	127, 140, 371, 624
BspQI	GCTCTTC	1 cut(s)	546
BspT107I	GGYRCC	2 cut(s)	369, 622
BsrI	ACTGG	3 cut(s)	177, 373, 770
BssECI	CCNNGG	5 cut(s)	25, 127, 352, 395, 729
BssMI	GATC	1 cut(s)	382
BssT1I	CCWWGG	2 cut(s)	25, 729
Bst2UI	CCWGG	2 cut(s)	354, 396
Bst4CI	ACNGT	2 cut(s)	406, 530
Bst6I	CTCTTC	1 cut(s)	546
BstC8I	GCNNGC	2 cut(s)	153, 166
BstDEI	CTNAG	3 cut(s)	198, 203, 267
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	277, 327
BstH2I	RGCGCY	1 cut(s)	214
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	1 cut(s)	385
BstMAI	GTCTC	1 cut(s)	180
BstMBI	GATC	1 cut(s)	382
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 208
BstNI	CCWGG	2 cut(s)	354, 396
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	3 cut(s)	127, 352, 394
BstSLI	GKGCMC	1 cut(s)	316
BstV1I	GCAGC	2 cut(s)	236, 258
BsuI	GTATCC	1 cut(s)	567
BsuRI	GGCC	4 cut(s)	24, 126, 224, 351
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	2 cut(s)	277, 327
BtsI	GCAGTG	2 cut(s)	162, 751
BtsIMutI	CAGTG	3 cut(s)	162, 170, 751
Cac8I	GCNNGC	2 cut(s)	153, 166
CfoI	GCGC	1 cut(s)	213
Cfr13I	GGNCC	5 cut(s)	125, 350, 452, 733, 768
Csp6I	GTAC	3 cut(s)	346, 370, 623
CviAII	CATG	6 cut(s)	5, 26, 299, 386, 480, 658
CviQI	GTAC	3 cut(s)	346, 370, 623
DdeI	CTNAG	3 cut(s)	198, 203, 267
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco130I	CCWWGG	2 cut(s)	25, 729
Eco47I	GGWCC	3 cut(s)	452, 733, 768
Eco47III	AGCGCT	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	125
EcoRII	CCWGG	2 cut(s)	352, 394
EcoT14I	CCWWGG	2 cut(s)	25, 729
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	25, 729
FaeI	CATG	6 cut(s)	8, 29, 302, 389, 483, 661
FalI	AAGNNNNNCTT	4 cut(s)	432, 464, 525, 557
FaqI	GGGAC	2 cut(s)	59, 620
FatI	CATG	6 cut(s)	4, 25, 298, 385, 479, 657
FauNDI	CATATG	1 cut(s)	361
FbaI	TGATCA	1 cut(s)	382
Fnu4HI	GCNGC	2 cut(s)	247, 250
FokI	GGATG	2 cut(s)	284, 334
Fsp4HI	GCNGC	2 cut(s)	247, 250
FspBI	CTAG	1 cut(s)	737
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	2 cut(s)	247, 250
GsuI	CTGGAG	1 cut(s)	235
HaeII	RGCGCY	1 cut(s)	214
HaeIII	GGCC	4 cut(s)	24, 126, 224, 351
HapII	CCGG	3 cut(s)	129, 136, 183
HhaI	GCGC	1 cut(s)	213
Hin1II	CATG	6 cut(s)	8, 29, 302, 389, 483, 661
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HinfI	GANTC	4 cut(s)	47, 84, 89, 749
HpaII	CCGG	3 cut(s)	129, 136, 183
Hpy166II	GTNNAC	3 cut(s)	314, 412, 652
Hpy188I	TCNGA	3 cut(s)	206, 295, 321
Hpy188III	TCNNGA	7 cut(s)	269, 380, 518, 571, 637, 676, 771
Hpy8I	GTNNAC	3 cut(s)	314, 412, 652
HpyAV	CCTTC	1 cut(s)	418
HpyCH4III	ACNGT	2 cut(s)	406, 530
HpyCH4V	TGCA	7 cut(s)	4, 314, 479, 600, 663, 695, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 208
HpyF3I	CTNAG	3 cut(s)	198, 203, 267
Hsp92II	CATG	6 cut(s)	8, 29, 302, 389, 483, 661
HspAI	GCGC	1 cut(s)	211
KpnI	GGTACC	2 cut(s)	373, 626
Ksp22I	TGATCA	1 cut(s)	382
Kzo9I	GATC	1 cut(s)	382
LguI	GCTCTTC	1 cut(s)	546
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	2 cut(s)	236, 258
LweI	GCATC	1 cut(s)	526
MaeI	CTAG	1 cut(s)	737
MaeIII	GTNAC	3 cut(s)	144, 157, 274
MalI	GATC	1 cut(s)	384
MboI	GATC	1 cut(s)	382
MboII	GAAGA	3 cut(s)	533, 652, 678
MfeI	CAATTG	1 cut(s)	192
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	6 cut(s)	103, 192, 487, 644, 670, 753
MlyI	GAGTC	1 cut(s)	41
MnlI	CCTC	6 cut(s)	8, 14, 106, 109, 116, 274
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	753
MseI	TTAA	2 cut(s)	590, 690
MspA1I	CMGCKG	1 cut(s)	249
MspI	CCGG	3 cut(s)	129, 136, 183
MspR9I	CCNGG	3 cut(s)	129, 354, 396
MunI	CAATTG	1 cut(s)	192
MvaI	CCWGG	2 cut(s)	354, 396
MwoI	GCNNNNNNNGC	2 cut(s)	161, 208
NciI	CCSGG	1 cut(s)	129
NcoI	CCATGG	1 cut(s)	25
NdeI	CATATG	1 cut(s)	361
NdeII	GATC	1 cut(s)	382
NlaIII	CATG	6 cut(s)	8, 29, 302, 389, 483, 661
NlaIV	GGNNCC	4 cut(s)	127, 140, 371, 624
NmuCI	GTSAC	1 cut(s)	157
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	8
PciSI	GCTCTTC	1 cut(s)	546
PdmI	GAANNNNTTC	1 cut(s)	753
PfeI	GAWTC	3 cut(s)	84, 89, 749
PkrI	GCNGC	2 cut(s)	248, 251
PleI	GAGTC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	41
Psp6I	CCWGG	2 cut(s)	352, 394
PspGI	CCWGG	2 cut(s)	352, 394
PspN4I	GGNNCC	4 cut(s)	127, 140, 371, 624
PspPI	GGNCC	5 cut(s)	125, 350, 452, 733, 768
PsrI	GAACNNNNNNTAC	2 cut(s)	599, 631
PvuII	CAGCTG	1 cut(s)	249
RsaI	GTAC	3 cut(s)	347, 371, 624
RsaNI	GTAC	3 cut(s)	346, 370, 623
SapI	GCTCTTC	1 cut(s)	546
SaqAI	TTAA	2 cut(s)	590, 690
SatI	GCNGC	2 cut(s)	247, 250
Sau3AI	GATC	1 cut(s)	382
Sau96I	GGNCC	5 cut(s)	125, 350, 452, 733, 768
SchI	GAGTC	1 cut(s)	41
ScrFI	CCNGG	3 cut(s)	129, 354, 396
SduI	GDGCHC	1 cut(s)	316
SfaNI	GCATC	1 cut(s)	526
SinI	GGWCC	3 cut(s)	452, 733, 768
SmlI	CTYRAG	1 cut(s)	279
SmoI	CTYRAG	1 cut(s)	279
Sse9I	AATT	6 cut(s)	103, 192, 487, 644, 670, 753
SspMI	CTAG	1 cut(s)	737
StyD4I	CCNGG	3 cut(s)	127, 352, 394
StyI	CCWWGG	2 cut(s)	25, 729
TaaI	ACNGT	2 cut(s)	406, 530
TaqI	TCGA	2 cut(s)	87, 111
TasI	AATT	6 cut(s)	103, 192, 487, 644, 670, 753
TfiI	GAWTC	3 cut(s)	84, 89, 749
Tru1I	TTAA	2 cut(s)	590, 690
Tru9I	TTAA	2 cut(s)	590, 690
TscAI	CASTG	3 cut(s)	162, 177, 751
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	2 cut(s)	246, 249
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	1 cut(s)	646
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	3 cut(s)	162, 177, 751
VneI	GTGCAC	1 cut(s)	312
VpaK11BI	GGWCC	3 cut(s)	452, 733, 768
XapI	RAATTY	1 cut(s)	670
XceI	RCATGY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	446
XmnI	GAANNNNTTC	1 cut(s)	753
XspI	CTAG	1 cut(s)	737
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.