AT2G42960

receptor-like protein kinase At2g42960

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Reverse (-)
17868150 .. 17871599
3450 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G42960.4

Sequence Viewer

Length: 1485 bp
ATGCCACCTGAGAGTTCTTTAAACGCTGAAATGTCCAAGAAGATATCATTTTTTGGTTTGAAGGGTTTGAAGTTGTGGGTATGGGTATGTTTGGTAGTTGGAGTATTCATAGTTATGATTCTCTGCATCTTGTCTCTATGGATCACATTCCGTCGGAAATCTAGAAGGTCTTCAAGCAAGTTTCCTTTCAACCAAATACCACATGTGTCCAAAGATATCAGAGTCGACAGGGCTGGGTTTCAGAATCCTCACCCCGAAAGTTTATATATAGAAATGAATGATAAATCCACTGGAAAAACGATGATGTCTCACTTGGGAAGAACCAAGTCTAGTGATAATGACACTTTGAGTCAATGTAGCTCTGTGAATCACCATGAGAGAGCTTGTAGTTCTCATTCTGGTGAAGAAGGAGGCTTTGGAAGTGCTGGGAGACAGTATGGAGGAGGACCTGTAACAGCATCTCCTTTGGTTGGTTTACCAGAAATATCCCATCTTGGTTGGGGACACTGGTTTACTCTTAGGGATCTTGAGCTAGCAACCAACCGTTTTGCTCCAGTGAATGTGCTTGGAGAGGGTGGTTATGGAGTAGTTTATAGGGGTAAACTTGTTAATGGTACCGAGGTTGCTGTAAAGAAGCTTCTGAACAATCTAGGGCAAGCTGAGAAGGAATTTCGGGTAGAAGTTGAGGCTATTGGTCATGTACGGCACAAGAATCTTGTTAGGCTTTTAGGATATTGCATAGAGGGAGTTCATCGGATGCTTGTTTATGAGTATGTTAATAGTGGTAACTTAGAACAATGGCTACATGGAGCAATGCGGCAACATGGAAATCTCACTTGGGAAGCACGGATGAAAATCATTACTGGTACTGCACAAGCGCTTGCTTACTTGCATGAAGCAATAGAACCAAAAGTGGTCCACAGAGACATAAAAGCAAGTAATATATTGATTGATGATGAGTTTAATGCAAAACTCTCTGACTTTGGGTTAGCCAAGCTCTTGGACTCGGGTGAGAGTCACATCACTACCAGAGTCATGGGTACCTTTGGATATGTAGCACCAGAATATGCTAATACAGGTCTTTTAAACGAAAAGAGTGATATATATAGCTTTGGTGTCTTGCTTCTTGAAGCTATAACTGGTCGAGATCCAGTTGATTATGGTCGTCCTGCTAATGAGGTGAATCTTGTTGAATGGCTAAAGATGATGGTTGGAACAAGAAGAGCAGAAGAAGTTGTGGATCCAAGACTTGAACCTAGACCTAGTAAAAGTGCTTTGAAACGTGCACTCTTGGTTTCCCTTAGATGTGTTGATCCTGAAGCAGAGAAACGTCCTAGAATGAGTCAGGTTGCGCGCATGCTTGAATCTGATGAACACCCTTTTCACAAGGAGAGGAGGAACAAAAGGAGCAAAACCGCGGGCATGGAGATTGTTGAGACCAAAGACGAATCTCTTGGTCCTAGTGGCTCAGAGACAAAGCCTTAG

Protein Analysis

494

Amino Acids

55.19

Weight (kDa)

8.82

Isoelectric Point (pI)

40.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 186 - 450 7.9e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 187 - 454 7.3e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 614, 1040
AccB1I GGYRCC 2 cut(s) 614, 1040
AccI GTMKAC 1 cut(s) 225
AccII CGCG 2 cut(s) 1354, 1418
AciI CCGC 3 cut(s) 817, 1416, 1418
AclWI GGATC 6 cut(s) 149, 531, 1142, 1235, 1248, 1307
AcsI RAATTY 1 cut(s) 668
AcuI CTGAAG 1 cut(s) 1338
AfaI GTAC 4 cut(s) 616, 702, 868, 1042
AfeI AGCGCT 1 cut(s) 879
AfiI CCNNNNNNNGG 1 cut(s) 470
AflIII ACRYGT 1 cut(s) 202
AgsI TTSAA 9 cut(s) 61, 70, 174, 190, 1130, 1193, 1253, 1279, 1364
AjuI GAANNNNNNNTTGG 4 cut(s) 399, 431, 820, 852
AluBI AGCT 8 cut(s) 360, 383, 532, 637, 659, 997, 1110, 1133
AluI AGCT 8 cut(s) 360, 383, 532, 637, 659, 997, 1110, 1133
Alw21I GWGCWC 1 cut(s) 1288
Alw26I GTCTC 6 cut(s) 138, 312, 424, 918, 1430, 1466
Alw44I GTGCAC 1 cut(s) 1284
AlwI GGATC 6 cut(s) 149, 531, 1142, 1235, 1248, 1307
Ama87I CYCGRG 1 cut(s) 1006
Aor51HI AGCGCT 1 cut(s) 879
ApaLI GTGCAC 1 cut(s) 1284
ApoI RAATTY 1 cut(s) 668
Asp700I GAANNNNTTC 1 cut(s) 169
Asp718I GGTACC 2 cut(s) 614, 1040
AspLEI GCGC 3 cut(s) 880, 1354, 1356
AspS9I GGNCC 3 cut(s) 446, 916, 1457
AsuHPI GGTGA 5 cut(s) 242, 362, 413, 1022, 1192
AsuNHI GCTAGC 1 cut(s) 532
AvaI CYCGRG 1 cut(s) 1006
AvaII GGWCC 3 cut(s) 446, 916, 1457
BaeGI GKGCMC 1 cut(s) 1288
BaeI ACNNNNGTAYC 2 cut(s) 606, 639
BamHI GGATCC 1 cut(s) 1240
BanI GGYRCC 2 cut(s) 614, 1040
BarI GAAGNNNNNNTAC 2 cut(s) 621, 653
BbsI GAAGAC 1 cut(s) 162
Bbv12I GWGCWC 1 cut(s) 1288
BccI CCATC 2 cut(s) 498, 1201
BceAI ACGGC 1 cut(s) 719
BcoDI GTCTC 6 cut(s) 138, 312, 424, 918, 1430, 1466
BfaI CTAG 8 cut(s) 162, 330, 533, 650, 1257, 1263, 1335, 1461
BfoI RGCGCY 1 cut(s) 881
BisI GCNGC 1 cut(s) 818
BlsI GCNGC 1 cut(s) 819
Bme18I GGWCC 3 cut(s) 446, 916, 1457
BmeT110I CYCGRG 1 cut(s) 1006
BmgT120I GGNCC 3 cut(s) 446, 916, 1457
BmiI GGNNCC 3 cut(s) 616, 1042, 1242
BmsI GCATC 3 cut(s) 135, 467, 747
BmtI GCTAGC 1 cut(s) 536
BpiI GAAGAC 1 cut(s) 162
BpmI CTGGAG 1 cut(s) 537
BpuEI CTTGAG 1 cut(s) 548
BsaBI GATNNNNATC 1 cut(s) 854
BsaI GGTCTC 1 cut(s) 1430
BsaJI CCNNGG 2 cut(s) 618, 1416
BsaXI ACNNNNNCTCC 4 cut(s) 435, 445, 465, 475
Bsc4I CCNNNNNNNGG 1 cut(s) 470
Bse1I ACTGG 6 cut(s) 295, 512, 554, 868, 1144, 1151
Bse3DI GCAATG 1 cut(s) 819
Bse8I GATNNNNATC 1 cut(s) 854
BseDI CCNNGG 2 cut(s) 618, 1416
BseGI GGATG 2 cut(s) 762, 855
BseJI GATNNNNATC 1 cut(s) 854
BseLI CCNNNNNNNGG 1 cut(s) 470
BseMI GCAATG 1 cut(s) 819
BseMII CTCAG 2 cut(s) 651, 1482
BseNI ACTGG 6 cut(s) 295, 512, 554, 868, 1144, 1151
BsePI GCGCGC 1 cut(s) 1352
BseRI GAGGAG 2 cut(s) 456, 1408
BseSI GKGCMC 1 cut(s) 1288
BseYI CCCAGC 2 cut(s) 233, 425
BsgI GTGCAG 1 cut(s) 855
Bsh1236I CGCG 2 cut(s) 1354, 1418
BshNI GGYRCC 2 cut(s) 614, 1040
BsiHKAI GWGCWC 1 cut(s) 1288
BsiHKCI CYCGRG 1 cut(s) 1006
BslFI GGGAC 1 cut(s) 516
BslI CCNNNNNNNGG 1 cut(s) 470
BsmAI GTCTC 6 cut(s) 138, 312, 424, 918, 1430, 1466
BsmFI GGGAC 1 cut(s) 516
Bso31I GGTCTC 1 cut(s) 1430
BsoBI CYCGRG 1 cut(s) 1006
Bsp1286I GDGCHC 1 cut(s) 1288
Bsp143I GATC 5 cut(s) 141, 523, 1147, 1240, 1312
BspACI CCGC 3 cut(s) 817, 1416, 1418
BspCNI CTCAG 2 cut(s) 652, 1481
BspFNI CGCG 2 cut(s) 1354, 1418
BspLI GGNNCC 3 cut(s) 616, 1042, 1242
BspOI GCTAGC 1 cut(s) 536
BspPI GGATC 6 cut(s) 149, 531, 1142, 1235, 1248, 1307
BspQI GCTCTTC 1 cut(s) 1216
BspT107I GGYRCC 2 cut(s) 614, 1040
BspTNI GGTCTC 1 cut(s) 1430
BsrDI GCAATG 1 cut(s) 819
BsrI ACTGG 6 cut(s) 295, 512, 554, 868, 1144, 1151
BssECI CCNNGG 2 cut(s) 618, 1416
BssHII GCGCGC 1 cut(s) 1352
BssMI GATC 5 cut(s) 141, 523, 1147, 1240, 1312
Bst4CI ACNGT 2 cut(s) 435, 545
Bst6I CTCTTC 1 cut(s) 1216
BstC8I GCNNGC 6 cut(s) 534, 657, 882, 1354, 1358, 1420
BstDEI CTNAG 7 cut(s) 9, 518, 660, 790, 1301, 1468, 1482
BstDSI CCRYGG 1 cut(s) 1416
BstF5I GGATG 2 cut(s) 762, 855
BstFNI CGCG 2 cut(s) 1354, 1418
BstH2I RGCGCY 1 cut(s) 881
BstHHI GCGC 3 cut(s) 880, 1354, 1356
BstKTI GATC 5 cut(s) 144, 526, 1150, 1243, 1315
BstMAI GTCTC 6 cut(s) 138, 312, 424, 918, 1430, 1466
BstMBI GATC 5 cut(s) 141, 523, 1147, 1240, 1312
BstNSI RCATGY 2 cut(s) 206, 1360
BstSLI GKGCMC 1 cut(s) 1288
BstUI CGCG 2 cut(s) 1354, 1418
BstV2I GAAGAC 1 cut(s) 162
BstX2I RGATCY 3 cut(s) 523, 1147, 1240
BstXI CCANNNNNNTGG 2 cut(s) 1000, 1036
BstYI RGATCY 3 cut(s) 523, 1147, 1240
BtgI CCRYGG 1 cut(s) 1416
BtsCI GGATG 2 cut(s) 762, 855
BtsIMutI CAGTG 3 cut(s) 288, 505, 561
Cac8I GCNNGC 6 cut(s) 534, 657, 882, 1354, 1358, 1420
CfoI GCGC 3 cut(s) 880, 1354, 1356
Cfr13I GGNCC 3 cut(s) 446, 916, 1457
Cfr42I CCGCGG 1 cut(s) 1419
Csp6I GTAC 4 cut(s) 615, 701, 867, 1041
CviAII CATG 9 cut(s) 203, 374, 698, 806, 824, 893, 1036, 1357, 1423
CviQI GTAC 4 cut(s) 615, 701, 867, 1041
DdeI CTNAG 7 cut(s) 9, 518, 660, 790, 1301, 1468, 1482
DpnI GATC 5 cut(s) 143, 525, 1149, 1242, 1314
DpnII GATC 5 cut(s) 141, 523, 1147, 1240, 1312
DraI TTTAAA 2 cut(s) 21, 1086
Eam1104I CTCTTC 1 cut(s) 1216
EarI CTCTTC 1 cut(s) 1216
Eco31I GGTCTC 1 cut(s) 1430
Eco32I GATATC 2 cut(s) 45, 217
Eco47I GGWCC 3 cut(s) 446, 916, 1457
Eco47III AGCGCT 1 cut(s) 879
Eco57I CTGAAG 1 cut(s) 1338
Eco88I CYCGRG 1 cut(s) 1006
EcoO109I RGGNCCY 1 cut(s) 446
EcoRV GATATC 2 cut(s) 45, 217
FaeI CATG 9 cut(s) 206, 377, 701, 809, 827, 896, 1039, 1360, 1426
FaqI GGGAC 1 cut(s) 516
FatI CATG 9 cut(s) 202, 373, 697, 805, 823, 892, 1035, 1356, 1422
FauI CCCGC 1 cut(s) 1411
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 1 cut(s) 818
FokI GGATG 2 cut(s) 769, 862
Fsp4HI GCNGC 1 cut(s) 818
FspBI CTAG 8 cut(s) 162, 330, 533, 650, 1257, 1263, 1335, 1461
GlaI GCGC 3 cut(s) 879, 1353, 1355
GluI GCNGC 1 cut(s) 818
GsaI CCCAGC 2 cut(s) 237, 429
GsuI CTGGAG 1 cut(s) 537
HaeII RGCGCY 1 cut(s) 881
HhaI GCGC 3 cut(s) 880, 1354, 1356
Hin1II CATG 9 cut(s) 206, 377, 701, 809, 827, 896, 1039, 1360, 1426
Hin6I GCGC 3 cut(s) 878, 1352, 1354
HinP1I GCGC 3 cut(s) 878, 1352, 1354
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HindIII AAGCTT 1 cut(s) 635
HphI GGTGA 5 cut(s) 242, 362, 413, 1022, 1192
Hpy166II GTNNAC 6 cut(s) 226, 476, 513, 602, 919, 1286
Hpy188I TCNGA 8 cut(s) 156, 221, 243, 642, 756, 979, 1369, 1471
Hpy188III TCNNGA 5 cut(s) 162, 527, 1127, 1145, 1316
Hpy8I GTNNAC 6 cut(s) 226, 476, 513, 602, 919, 1286
Hpy99I CGWCG 1 cut(s) 156
HpyAV CCTTC 4 cut(s) 55, 159, 401, 658
HpyCH4III ACNGT 2 cut(s) 435, 545
HpyCH4IV ACGT 2 cut(s) 1282, 1330
HpyCH4V TGCA 6 cut(s) 126, 738, 872, 892, 968, 1286
HpyF3I CTNAG 7 cut(s) 9, 518, 660, 790, 1301, 1468, 1482
HpySE526I ACGT 2 cut(s) 1282, 1330
Hsp92II CATG 9 cut(s) 206, 377, 701, 809, 827, 896, 1039, 1360, 1426
HspAI GCGC 3 cut(s) 878, 1352, 1354
KpnI GGTACC 2 cut(s) 618, 1044
KspI CCGCGG 1 cut(s) 1419
Kzo9I GATC 5 cut(s) 141, 523, 1147, 1240, 1312
LguI GCTCTTC 1 cut(s) 1216
LmnI GCTCC 3 cut(s) 556, 809, 1407
LweI GCATC 3 cut(s) 135, 467, 747
MaeI CTAG 8 cut(s) 162, 330, 533, 650, 1257, 1263, 1335, 1461
MaeII ACGT 2 cut(s) 1282, 1330
MaeIII GTNAC 3 cut(s) 451, 785, 1016
MalI GATC 5 cut(s) 143, 525, 1149, 1242, 1314
MboI GATC 5 cut(s) 141, 523, 1147, 1240, 1312
MboII GAAGA 6 cut(s) 52, 162, 330, 416, 1233, 1241
MflI RGATCY 3 cut(s) 523, 1147, 1240
MhlI GDGCHC 1 cut(s) 1288
MluCI AATT 1 cut(s) 668
MlyI GAGTC 6 cut(s) 231, 358, 998, 1024, 1041, 1351
MmeI TCCRAC 3 cut(s) 79, 134, 1192
MroXI GAANNNNTTC 1 cut(s) 169
MseI TTAA 5 cut(s) 20, 609, 777, 963, 1085
MslI CAYNNNNRTG 2 cut(s) 113, 399
MspA1I CMGCKG 1 cut(s) 1418
MvnI CGCG 2 cut(s) 1354, 1418
NdeII GATC 5 cut(s) 141, 523, 1147, 1240, 1312
NheI GCTAGC 1 cut(s) 532
NlaIII CATG 9 cut(s) 206, 377, 701, 809, 827, 896, 1039, 1360, 1426
NlaIV GGNNCC 3 cut(s) 616, 1042, 1242
NmuCI GTSAC 1 cut(s) 1016
NspI RCATGY 2 cut(s) 206, 1360
PaeI GCATGC 1 cut(s) 1360
PauI GCGCGC 1 cut(s) 1352
PciI ACATGT 1 cut(s) 202
PciSI GCTCTTC 1 cut(s) 1216
PdmI GAANNNNTTC 1 cut(s) 169
PfeI GAWTC 7 cut(s) 118, 244, 367, 712, 1183, 1364, 1448
PkrI GCNGC 1 cut(s) 819
PleI GAGTC 6 cut(s) 230, 357, 998, 1023, 1040, 1350
PpsI GAGTC 6 cut(s) 230, 357, 998, 1023, 1040, 1350
PpuMI RGGWCCY 1 cut(s) 446
PscI ACATGT 1 cut(s) 202
Psp5II RGGWCCY 1 cut(s) 446
PspFI CCCAGC 2 cut(s) 233, 425
PspN4I GGNNCC 3 cut(s) 616, 1042, 1242
PspPI GGNCC 3 cut(s) 446, 916, 1457
PspPPI RGGWCCY 1 cut(s) 446
PsrI GAACNNNNNNTAC 2 cut(s) 786, 818
PsuI RGATCY 3 cut(s) 523, 1147, 1240
PteI GCGCGC 1 cut(s) 1352
RsaI GTAC 4 cut(s) 616, 702, 868, 1042
RsaNI GTAC 4 cut(s) 615, 701, 867, 1041
RseI CAYNNNNRTG 2 cut(s) 113, 399
SacII CCGCGG 1 cut(s) 1419
SalI GTCGAC 1 cut(s) 224
SapI GCTCTTC 1 cut(s) 1216
SaqAI TTAA 5 cut(s) 20, 609, 777, 963, 1085
SatI GCNGC 1 cut(s) 818
Sau3AI GATC 5 cut(s) 141, 523, 1147, 1240, 1312
Sau96I GGNCC 3 cut(s) 446, 916, 1457
SchI GAGTC 6 cut(s) 231, 358, 998, 1024, 1041, 1351
SduI GDGCHC 1 cut(s) 1288
SfaNI GCATC 3 cut(s) 135, 467, 747
Sfr303I CCGCGG 1 cut(s) 1419
SgrBI CCGCGG 1 cut(s) 1419
SinI GGWCC 3 cut(s) 446, 916, 1457
SmiMI CAYNNNNRTG 2 cut(s) 113, 399
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
SphI GCATGC 1 cut(s) 1360
Sse9I AATT 1 cut(s) 668
SsiI CCGC 3 cut(s) 817, 1416, 1418
SspMI CTAG 8 cut(s) 162, 330, 533, 650, 1257, 1263, 1335, 1461
TaaI ACNGT 2 cut(s) 435, 545
TaiI ACGT 2 cut(s) 1285, 1333
TaqI TCGA 2 cut(s) 225, 1144
TasI AATT 1 cut(s) 668
TauI GCSGC 1 cut(s) 820
TfiI GAWTC 7 cut(s) 118, 244, 367, 712, 1183, 1364, 1448
Tru1I TTAA 5 cut(s) 20, 609, 777, 963, 1085
Tru9I TTAA 5 cut(s) 20, 609, 777, 963, 1085
TscAI CASTG 3 cut(s) 295, 512, 561
TseFI GTSAC 1 cut(s) 1016
Tsp45I GTSAC 1 cut(s) 1016
TspDTI ATGAA 6 cut(s) 97, 290, 740, 866, 909, 1386
TspGWI ACGGA 2 cut(s) 140, 862
TspRI CASTG 3 cut(s) 295, 512, 561
VneI GTGCAC 1 cut(s) 1284
VpaK11BI GGWCC 3 cut(s) 446, 916, 1457
XapI RAATTY 1 cut(s) 668
XbaI TCTAGA 1 cut(s) 161
XceI RCATGY 2 cut(s) 206, 1360
XmiI GTMKAC 1 cut(s) 225
XmnI GAANNNNTTC 1 cut(s) 169
XspI CTAG 8 cut(s) 162, 330, 533, 650, 1257, 1263, 1335, 1461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.