Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008223

Physical Location & Seq

Genomic Coordinates Forward (+)

5208525 .. 5211029

Gene Structure 2505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07030.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1536 bp

ATGTCATCTGGAAGTTCTTTGAATGTGGAATTATCGAAGAAGATAGGATTTTTGGGTTTGAAACTATGGGTTGTGATCTGTGTATGTGTTGGTGCATTTATTGTTTCGATCCTATGTTTCTTATCTATATGGGTTTCATTTCGGAGGAAGTCTCGACGATCAGTGGACAAGTTCCCAGTCACCCAAATACCAAATGTCTCTAAAGATATCAACATTGATAAGATGGGGGCTCAGGGTACCCATGATCACCCTGATAATTTATTTCTTTCAGAACATGATAAAGCAAGTGATAAGAAATCAGAGAAGATGTTAGTTCATTTAGGCACGAGCAAATCGAGTGATCCTGATAACATGAGTCAGTGCAGCTCAATTTATCATCATGAGAGAGCACTTAGTTCGCAGTCAGGGGAAGAAGGAAGCTCTGGGACTGGGCGAAAGCAGTCGTCATTATCCTATGGACGACCTATTACAGCCTCTCCTTTGATTGGCTTGCCTGAAGGTTCTCATCTTGGATGGGGCCACTGGTTTACTCTTAGAGATCTGCAATTTGCTACAAATCGTTTTTCTGCAGAAAATGTGCTTGGCGAGGGTGGATATGGGGTTGTTTACAAGGCCAGGCTGATCAATGGAACTGAGGTGGCAGTGAAAAAGCTCTTAAATAACTTGGGGCAGGCAGAGAAAGAATTTAGGGTTGAAGTGGAGGCCATTGGTAATGTTCGGCATAAGAATCTTGTGCGGCTCTTGGGTTACTGCATAGAAGGTGTTCACAGGATGCTGGTGTATGAATATGTGAACAATGGAAACCTAGAACAATGGCTACATGGGGCCATGCGCCATCATGGAACCCTTACTTGGGAGGCTCGCATGAAGGTGATTCTTGGTACTGCTAAAGCGCTTTCTTATCTACACGAAGCTATAGAACCAAAAGTTGTCCACAGAGATATTAAATCCAGCAACATTTTGATTGATGACGAGTTCAATGCCAAGGTTTCTGATTTTGGATTGGCCAAACTCTTGGATTCAGGAGAAAGTCACATCACGACTAGAGTCATGGGGACTTTTGGTTATGTGGCACCAGAATATGCTAATACTGGCTTGTTAAATGAGAAGAGCGACATCTACAGCTTTGGCGTCCTCCTGCTTGAGGCAGTTACAGGAAGGGATCCTGTGGACTATGGCCGCCCTGCTAATGAGGTCAATCTAGTTGAGTGGCTCAAATTGATGGTAGGTGCAAAAAGAGCAGAGGAAGTTGTGGATCCAAACCTTGAAGTTAAACCCAGTACGCGTGCTTTAAAACGCGCCCTTTTGGTTGCACTTCGGTGTGTAGATCATGATTCAGAGAACAGACCAAAAATGAGCCAGGTTGTGCGTATGCTCGAAGCTGATGAACACCCATTTCGTGAGGATCGAAGGAACAGAAAGAGTCGTACAACCAGCATGGATATGGAATCTGTGAAGGAAAGTTCTGCCTCAGCTGATATAGAAAAGAAGGCAGGGGATCTGGAGAGCCAAATATCCGGGACAAGTCATGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

512

Amino Acids

56.82

Weight (kDa)

7.32

Isoelectric Point (pI)

36.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42960 AT2G42960 AT2G42960 AT2G42960 AT2G42960 AT3G59110
fragaria_vesca	FvH4_6g38380 FvH4_6g38380
malus_domestica	MD09G1150400.v1.1 MD17G1138000.v1.1
prunus_persica	Prupe.3G174500_v2.0.a1
pyrus_communis	pycom09g07030 pycom17g13120
rosa_chinensis	RchiOBHm_Chr2g0151691
rosa_laevigata	RLG00000020569
rosa_multiflora	Rmu_sc0005294.1_g000046
rosa_roxburghii	Rroxscaffold_2G00096250
rosa_rugosa	Rorug02G0428100
rosa_samantha	Rh2AG488900 Rh2BG501600 Rh2CG475500 Rh2DG512700
rosa_wichuraiana	Rw2G040090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	236
AccB1I	GGYRCC	2 cut(s)	236, 1072
AccII	CGCG	2 cut(s)	1285, 1299
AciI	CCGC	2 cut(s)	736, 1180
AclWI	GGATC	8 cut(s)	103, 335, 1157, 1170, 1250, 1263, 1413, 1506
AcoI	YGGCCR	2 cut(s)	1005, 1177
AcsI	RAATTY	1 cut(s)	683
AcuI	CTGAAG	1 cut(s)	516
AcyI	GRCGYC	1 cut(s)	1131
AfaI	GTAC	4 cut(s)	238, 883, 1282, 1429
AfeI	AGCGCT	1 cut(s)	894
AfiI	CCNNNNNNNGG	4 cut(s)	485, 852, 853, 1144
AflIII	ACRYGT	1 cut(s)	1283
AgsI	TTSAA	5 cut(s)	22, 61, 695, 979, 1268
AjnI	CCWGG	2 cut(s)	614, 1359
AjuI	GAANNNNNNNTTGG	4 cut(s)	564, 596, 835, 867
AleI	CACNNNNGTG	1 cut(s)	1318
AluBI	AGCT	7 cut(s)	366, 420, 652, 914, 1125, 1382, 1475
AluI	AGCT	7 cut(s)	366, 420, 652, 914, 1125, 1382, 1475
Alw21I	GWGCWC	1 cut(s)	391
Alw26I	GTCTC	2 cut(s)	156, 202
AlwI	GGATC	8 cut(s)	103, 335, 1157, 1170, 1250, 1263, 1413, 1506
Aor51HI	AGCGCT	1 cut(s)	894
AoxI	GGCC	6 cut(s)	517, 612, 702, 825, 1005, 1177
ApeKI	GCWGC	1 cut(s)	363
ApoI	RAATTY	1 cut(s)	683
Asp700I	GAANNNNTTC	1 cut(s)	762
Asp718I	GGTACC	1 cut(s)	236
AspLEI	GCGC	3 cut(s)	834, 895, 1301
AspS9I	GGNCC	2 cut(s)	517, 825
AsuC2I	CCSGG	1 cut(s)	1519
AsuHPI	GGTGA	3 cut(s)	172, 239, 883
BalI	TGGCCA	1 cut(s)	1007
BamHI	GGATCC	2 cut(s)	1162, 1255
BanI	GGYRCC	2 cut(s)	236, 1072
BanII	GRGCYC	1 cut(s)	232
BauI	CACGAG	1 cut(s)	325
Bbv12I	GWGCWC	1 cut(s)	391
BbvCI	CCTCAGC	1 cut(s)	1471
BbvI	GCAGC	1 cut(s)	375
BccI	CCATC	4 cut(s)	217, 507, 843, 1216
BcgI	CGANNNNNNTGC	4 cut(s)	378, 412, 962, 996
BciT130I	CCWGG	2 cut(s)	616, 1361
BclI	TGATCA	2 cut(s)	244, 621
BcnI	CCSGG	1 cut(s)	1519
BcoDI	GTCTC	2 cut(s)	156, 202
BfaI	CTAG	3 cut(s)	806, 1044, 1202
BfmI	CTRYAG	3 cut(s)	567, 915, 1120
BfoI	RGCGCY	1 cut(s)	896
BglII	AGATCT	1 cut(s)	538
BisI	GCNGC	3 cut(s)	364, 737, 1180
BlsI	GCNGC	3 cut(s)	365, 738, 1181
Bme1390I	CCNGG	3 cut(s)	616, 1361, 1519
BmgT120I	GGNCC	2 cut(s)	517, 825
BmiI	GGNNCC	7 cut(s)	238, 518, 826, 844, 1074, 1164, 1257
BmrFI	CCNGG	3 cut(s)	616, 1361, 1519
BmrI	ACTGGG	3 cut(s)	170, 438, 1272
BmsI	GCATC	1 cut(s)	762
BmuI	ACTGGG	3 cut(s)	170, 438, 1272
BoxI	GACNNNNGTC	1 cut(s)	1046
BplI	GAGNNNNNCTC	2 cut(s)	136, 168
BpmI	CTGGAG	1 cut(s)	1523
Bpu10I	CCTNAGC	2 cut(s)	231, 1471
BpuEI	CTTGAG	1 cut(s)	1163
BpuMI	CCSGG	1 cut(s)	1519
BsaHI	GRCGYC	1 cut(s)	1131
BsaJI	CCNNGG	1 cut(s)	984
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bsc4I	CCNNNNNNNGG	4 cut(s)	485, 852, 853, 1144
Bse1I	ACTGG	5 cut(s)	176, 433, 527, 1096, 1278
BseBI	CCWGG	2 cut(s)	616, 1361
BseDI	CCNNGG	1 cut(s)	984
BseGI	GGATG	2 cut(s)	518, 777
BseLI	CCNNNNNNNGG	4 cut(s)	485, 852, 853, 1144
BseMII	CTCAG	3 cut(s)	245, 624, 1485
BseNI	ACTGG	5 cut(s)	176, 433, 527, 1096, 1278
BseXI	GCAGC	1 cut(s)	375
BsgI	GTGCAG	1 cut(s)	382
Bsh1236I	CGCG	2 cut(s)	1285, 1299
BshFI	GGCC	6 cut(s)	519, 614, 704, 827, 1007, 1179
BshNI	GGYRCC	2 cut(s)	236, 1072
BsiHKAI	GWGCWC	1 cut(s)	391
BsiSI	CCGG	1 cut(s)	1518
BslFI	GGGAC	2 cut(s)	439, 1069
BslI	CCNNNNNNNGG	4 cut(s)	485, 852, 853, 1144
BsmAI	GTCTC	2 cut(s)	156, 202
BsmFI	GGGAC	2 cut(s)	439, 1069
BsnI	GGCC	6 cut(s)	519, 614, 704, 827, 1007, 1179
Bsp1286I	GDGCHC	2 cut(s)	232, 391
BspACI	CCGC	2 cut(s)	736, 1180
BspANI	GGCC	6 cut(s)	519, 614, 704, 827, 1007, 1179
BspCNI	CTCAG	3 cut(s)	244, 625, 1484
BspFNI	CGCG	2 cut(s)	1285, 1299
BspHI	TCATGA	3 cut(s)	379, 1330, 1528
BspLI	GGNNCC	7 cut(s)	238, 518, 826, 844, 1074, 1164, 1257
BspMAI	CTGCAG	1 cut(s)	571
BspPI	GGATC	8 cut(s)	103, 335, 1157, 1170, 1250, 1263, 1413, 1506
BspQI	GCTCTTC	1 cut(s)	1103
BspT107I	GGYRCC	2 cut(s)	236, 1072
BsrI	ACTGG	5 cut(s)	176, 433, 527, 1096, 1278
BssECI	CCNNGG	1 cut(s)	984
BssNI	GRCGYC	1 cut(s)	1131
BssSI	CACGAG	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	984
Bst2BI	CACGAG	1 cut(s)	325
Bst2UI	CCWGG	2 cut(s)	616, 1361
Bst6I	CTCTTC	1 cut(s)	1103
BstACI	GRCGYC	1 cut(s)	1131
BstC8I	GCNNGC	4 cut(s)	491, 672, 862, 1287
BstDEI	CTNAG	5 cut(s)	231, 392, 533, 633, 1471
BstENI	CCTNNNNNAGG	1 cut(s)	1142
BstF5I	GGATG	2 cut(s)	518, 777
BstFNI	CGCG	2 cut(s)	1285, 1299
BstH2I	RGCGCY	1 cut(s)	896
BstHHI	GCGC	3 cut(s)	834, 895, 1301
BstMAI	GTCTC	2 cut(s)	156, 202
BstMWI	GCNNNNNNNGC	1 cut(s)	1238
BstNI	CCWGG	2 cut(s)	616, 1361
BstPAI	GACNNNNGTC	1 cut(s)	1046
BstSCI	CCNGG	3 cut(s)	614, 1359, 1517
BstSFI	CTRYAG	3 cut(s)	567, 915, 1120
BstUI	CGCG	2 cut(s)	1285, 1299
BstV1I	GCAGC	1 cut(s)	375
BstX2I	RGATCY	4 cut(s)	538, 1162, 1255, 1498
BstXI	CCANNNNNNTGG	1 cut(s)	1015
BstYI	RGATCY	4 cut(s)	538, 1162, 1255, 1498
BsuRI	GGCC	6 cut(s)	519, 614, 704, 827, 1007, 1179
BtsCI	GGATG	2 cut(s)	518, 777
BtsI	GCAGTG	1 cut(s)	648
BtsIMutI	CAGTG	4 cut(s)	168, 365, 520, 648
Cac8I	GCNNGC	4 cut(s)	491, 672, 862, 1287
CciI	TCATGA	3 cut(s)	379, 1330, 1528
CfoI	GCGC	3 cut(s)	834, 895, 1301
Cfr13I	GGNCC	2 cut(s)	517, 825
CseI	GACGC	1 cut(s)	1120
Csp6I	GTAC	4 cut(s)	237, 882, 1281, 1428
CviQI	GTAC	4 cut(s)	237, 882, 1281, 1428
DdeI	CTNAG	5 cut(s)	231, 392, 533, 633, 1471
DraI	TTTAAA	1 cut(s)	1293
EaeI	YGGCCR	2 cut(s)	1005, 1177
Eam1104I	CTCTTC	1 cut(s)	1103
EarI	CTCTTC	1 cut(s)	1103
Eco130I	CCWWGG	1 cut(s)	984
Eco24I	GRGCYC	1 cut(s)	232
Eco32I	GATATC	1 cut(s)	208
Eco47III	AGCGCT	1 cut(s)	894
Eco57I	CTGAAG	1 cut(s)	516
EcoNI	CCTNNNNNAGG	1 cut(s)	1142
EcoRII	CCWGG	2 cut(s)	614, 1359
EcoRV	GATATC	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	984
EcoT38I	GRGCYC	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	984
FaqI	GGGAC	2 cut(s)	439, 1069
FbaI	TGATCA	2 cut(s)	244, 621
Fnu4HI	GCNGC	3 cut(s)	364, 737, 1180
FokI	GGATG	2 cut(s)	525, 784
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	3 cut(s)	364, 737, 1180
FspBI	CTAG	3 cut(s)	806, 1044, 1202
GlaI	GCGC	3 cut(s)	833, 894, 1300
GluI	GCNGC	3 cut(s)	364, 737, 1180
GsuI	CTGGAG	1 cut(s)	1523
HaeII	RGCGCY	1 cut(s)	896
HaeIII	GGCC	6 cut(s)	519, 614, 704, 827, 1007, 1179
HapII	CCGG	1 cut(s)	1518
HgaI	GACGC	1 cut(s)	1120
HhaI	GCGC	3 cut(s)	834, 895, 1301
Hin1I	GRCGYC	1 cut(s)	1131
Hin6I	GCGC	3 cut(s)	832, 893, 1299
HinP1I	GCGC	3 cut(s)	832, 893, 1299
HinfI	GANTC	8 cut(s)	355, 727, 874, 1019, 1047, 1334, 1423, 1448
HpaII	CCGG	1 cut(s)	1518
HphI	GGTGA	3 cut(s)	172, 239, 883
Hpy166II	GTNNAC	7 cut(s)	166, 528, 607, 766, 793, 934, 1171
Hpy188I	TCNGA	5 cut(s)	144, 271, 301, 994, 1339
Hpy8I	GTNNAC	7 cut(s)	166, 528, 607, 766, 793, 934, 1171
Hpy99I	CGWCG	1 cut(s)	159
HpyAV	CCTTC	8 cut(s)	407, 491, 752, 862, 1152, 1404, 1450, 1483
HpyCH4V	TGCA	7 cut(s)	95, 363, 544, 569, 753, 1232, 1313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1238
HpyF3I	CTNAG	5 cut(s)	231, 392, 533, 633, 1471
Hsp92I	GRCGYC	1 cut(s)	1131
HspAI	GCGC	3 cut(s)	832, 893, 1299
KpnI	GGTACC	1 cut(s)	240
Ksp22I	TGATCA	2 cut(s)	244, 621
LguI	GCTCTTC	1 cut(s)	1103
Lsp1109I	GCAGC	1 cut(s)	375
LweI	GCATC	1 cut(s)	762
MaeI	CTAG	3 cut(s)	806, 1044, 1202
MaeIII	GTNAC	4 cut(s)	178, 746, 1031, 1150
MboII	GAAGA	5 cut(s)	49, 52, 316, 422, 1120
MflI	RGATCY	4 cut(s)	538, 1162, 1255, 1498
MhlI	GDGCHC	2 cut(s)	232, 391
MlsI	TGGCCA	1 cut(s)	1007
MluCI	AATT	6 cut(s)	29, 256, 369, 545, 683, 1217
MluI	ACGCGT	1 cut(s)	1283
MluNI	TGGCCA	1 cut(s)	1007
MlyI	GAGTC	3 cut(s)	364, 1056, 1432
Mox20I	TGGCCA	1 cut(s)	1007
MroXI	GAANNNNTTC	1 cut(s)	762
MscI	TGGCCA	1 cut(s)	1007
MseI	TTAA	5 cut(s)	656, 945, 1100, 1272, 1292
MslI	CAYNNNNRTG	3 cut(s)	869, 1318, 1442
Msp20I	TGGCCA	1 cut(s)	1007
MspA1I	CMGCKG	1 cut(s)	1475
MspI	CCGG	1 cut(s)	1518
MspR9I	CCNGG	3 cut(s)	616, 1361, 1519
MvaI	CCWGG	2 cut(s)	616, 1361
MvnI	CGCG	2 cut(s)	1285, 1299
MwoI	GCNNNNNNNGC	1 cut(s)	1238
NciI	CCSGG	1 cut(s)	1519
NlaIV	GGNNCC	7 cut(s)	238, 518, 826, 844, 1074, 1164, 1257
NmuCI	GTSAC	2 cut(s)	178, 1031
OliI	CACNNNNGTG	1 cut(s)	1318
PagI	TCATGA	3 cut(s)	379, 1330, 1528
PciSI	GCTCTTC	1 cut(s)	1103
PcsI	WCGNNNNNNNCGW	2 cut(s)	332, 1405
PdmI	GAANNNNTTC	1 cut(s)	762
PfeI	GAWTC	5 cut(s)	727, 874, 1019, 1334, 1448
PfoI	TCCNGGA	1 cut(s)	1517
PkrI	GCNGC	3 cut(s)	365, 738, 1181
PleI	GAGTC	3 cut(s)	363, 1055, 1431
PpsI	GAGTC	3 cut(s)	363, 1055, 1431
PshAI	GACNNNNGTC	1 cut(s)	1046
Psp6I	CCWGG	2 cut(s)	614, 1359
PspGI	CCWGG	2 cut(s)	614, 1359
PspN4I	GGNNCC	7 cut(s)	238, 518, 826, 844, 1074, 1164, 1257
PspPI	GGNCC	2 cut(s)	517, 825
PsrI	GAACNNNNNNTAC	2 cut(s)	801, 833
PstI	CTGCAG	1 cut(s)	571
PsuI	RGATCY	4 cut(s)	538, 1162, 1255, 1498
PvuII	CAGCTG	1 cut(s)	1475
RsaI	GTAC	4 cut(s)	238, 883, 1282, 1429
RsaNI	GTAC	4 cut(s)	237, 882, 1281, 1428
RseI	CAYNNNNRTG	3 cut(s)	869, 1318, 1442
SapI	GCTCTTC	1 cut(s)	1103
SaqAI	TTAA	5 cut(s)	656, 945, 1100, 1272, 1292
SatI	GCNGC	3 cut(s)	364, 737, 1180
Sau96I	GGNCC	2 cut(s)	517, 825
SchI	GAGTC	3 cut(s)	364, 1056, 1432
ScrFI	CCNGG	3 cut(s)	616, 1361, 1519
SduI	GDGCHC	2 cut(s)	232, 391
SfaNI	GCATC	1 cut(s)	762
SfcI	CTRYAG	3 cut(s)	567, 915, 1120
SmiMI	CAYNNNNRTG	3 cut(s)	869, 1318, 1442
SmlI	CTYRAG	1 cut(s)	1142
SmoI	CTYRAG	1 cut(s)	1142
Sse9I	AATT	6 cut(s)	29, 256, 369, 545, 683, 1217
SsiI	CCGC	2 cut(s)	736, 1180
SspMI	CTAG	3 cut(s)	806, 1044, 1202
StyD4I	CCNGG	3 cut(s)	614, 1359, 1517
StyI	CCWWGG	1 cut(s)	984
TaqI	TCGA	6 cut(s)	35, 107, 154, 335, 1377, 1408
TasI	AATT	6 cut(s)	29, 256, 369, 545, 683, 1217
TauI	GCSGC	2 cut(s)	739, 1182
TfiI	GAWTC	5 cut(s)	727, 874, 1019, 1334, 1448
Tru1I	TTAA	5 cut(s)	656, 945, 1100, 1272, 1292
Tru9I	TTAA	5 cut(s)	656, 945, 1100, 1272, 1292
TscAI	CASTG	4 cut(s)	168, 365, 527, 648
TseFI	GTSAC	2 cut(s)	178, 1031
TseI	GCWGC	1 cut(s)	363
Tsp45I	GTSAC	2 cut(s)	178, 1031
TspDTI	ATGAA	5 cut(s)	126, 305, 798, 881, 1401
TspRI	CASTG	4 cut(s)	168, 365, 527, 648
XagI	CCTNNNNNAGG	1 cut(s)	1142
XapI	RAATTY	1 cut(s)	683
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1441
XmnI	GAANNNNTTC	1 cut(s)	762
XspI	CTAG	3 cut(s)	806, 1044, 1202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.