MD17G1138000.v1.1

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
12382603 .. 12386511
3909 bp
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UTR
Exon/CDS
Intron
MD17G1138000.v1.1.491

Sequence Viewer

Length: 1542 bp
ATGTCATCCGGGAGTTCAACTTCTTTGAATGTGGAATTATCAAAGAAGATAGGATTTTTGGGTTTGAAACTATGGGTTGTAATTGGTATATGTGTTGGTGCATTTATTGTTTTGATCCTATGTTTCTTATCTATATGGGTTTCATTTCGGAGGAAGTCTCGAAGATCAGTGGACAAGTTCCCAGTCACCCAAATACCGAATGTCTCTAAAGATATCAACATTGATAAGATGGCGGCTCAGGGTACCCATGATCACCCTGATAATTTATTTCATTCAGTACATGATAAAGCAAGTGATAAGAATTCAGAGAAGATGTTAGTTCAATTAGGCACGAGCAAATCGATTGATCCTAATAACATGAGTCAGTGCAGCTCAATTTATCATCATGAGAGGGCACTTAGTTCACAGTCGGGGGAAGAAGGAAGCTCTGGGACTGTGCGAAAGCAGTCGTCATTGTCTTGTGGAGGACTTGTTGCAGCCTCTCCTTTAGTTGGCTTGCCAGAAGTTTCTCATCTTGGGTGGGGTCACTGGTTCACTCTTAGGGATCTGCAATTTGCTACAAATCGTTTTTCTGCAGAAAATGTGCTTGGTGAGGGTGGATATGGAGTTGTTTACAAGGGCAGGCTGATCAATGGAACTGAGGTGGCAGTGAAAAAACTCTTAAATAACTTGGGGCAGGCAGAGAAAGAATTTAGGGTTGAAGTGGAGGCCATTGGTCATGTTCGGCATAAGAATCTTGTGCGGCTCTTGGGTTACTGCATAGAAGGTGTTCACAGGATGCTGGTGTATGAATATGTGAACAATGGAAATCTAGAGCAATGGCTACATGGGGCCATGTGCCAACACGGCACCCTTACTTGGGAAGCTCGCATGAAGGTGATTCTTGGTACTGCTAAGGCGCTTTCTTATCTACATGAAGCTATAGAACCAAAAGTTGTCCACAGAGATATAAAATCAAGCAACATTTTGATTGATAACGAGTTCAATGCCAAGGTTTCTGATTTTGGACTGGCCAAACTCTTGGGTTCAGGAGAAAGTCACATCACGACTAGAGTCATGGGGACTTTTGGTTATGTGGCACCAGAATATGCTAATACTGGCTTGTTAAATGAGAAGAGCGACATCTACAGCTTTGGTGTCCTCCTACTTGAAGCAGTTACGGGAAGGGATCCTGTGGACTATGGCCGACCTGCTAATGAGGTCAATCTGGTTGAGTGGCTAAAGTTGATGGTAGGTGCAAGAAGAGCCGAGGAAGTTGTGGATCCAAACCTTGAAGTTAAACCCAGTACACGTGCCTTAAAACGTGCCCTTTTGGTTGCACTTCGGTGTGTTGATCATGATTCAGAGAACAGGCCCAAAATGAGCCAGGTTGTGCGTATGCTCGAAGCTGATGAATACCCATTTCGTGAGGATCGAAGGAACAGAAAGAGTCGTACAGCCAGCATGGATATGGAATCTATGAAGGAAAGTTCTGCCTCTGTCGACATAGAAAAGAAGCCAGGGGATCTGGAGAGCCAAATATCCGAGACAAGCCATGGATAG

Protein Analysis

514

Amino Acids

56.89

Weight (kDa)

7.69

Isoelectric Point (pI)

37.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 192 - 459 2.3e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 192 - 461 7.2e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1198
Acc65I GGTACC 1 cut(s) 242
AccB1I GGYRCC 3 cut(s) 242, 848, 1078
AccI GTMKAC 1 cut(s) 1482
AciI CCGC 2 cut(s) 233, 742
AclWI GGATC 9 cut(s) 109, 341, 552, 1163, 1176, 1256, 1269, 1419, 1512
AcoI YGGCCR 2 cut(s) 1011, 1183
AcsI RAATTY 2 cut(s) 301, 689
AcvI CACGTG 1 cut(s) 1292
AfaI GTAC 5 cut(s) 244, 279, 889, 1288, 1435
AfiI CCNNNNNNNGG 3 cut(s) 491, 858, 859
AflIII ACRYGT 1 cut(s) 1289
AgsI TTSAA 8 cut(s) 18, 28, 67, 323, 701, 985, 1151, 1274
AjnI CCWGG 2 cut(s) 1365, 1498
AjuI GAANNNNNNNTTGG 2 cut(s) 570, 602
AleI CACNNNNGTG 1 cut(s) 1324
AluBI AGCT 6 cut(s) 372, 426, 866, 920, 1131, 1388
AluI AGCT 6 cut(s) 372, 426, 866, 920, 1131, 1388
Alw26I GTCTC 3 cut(s) 162, 208, 1520
AlwI GGATC 9 cut(s) 109, 341, 552, 1163, 1176, 1256, 1269, 1419, 1512
AoxI GGCC 5 cut(s) 708, 831, 1011, 1183, 1352
ApeKI GCWGC 2 cut(s) 369, 476
ApoI RAATTY 2 cut(s) 301, 689
Asp700I GAANNNNTTC 1 cut(s) 768
Asp718I GGTACC 1 cut(s) 242
AspLEI GCGC 1 cut(s) 901
AspS9I GGNCC 2 cut(s) 831, 1353
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 4 cut(s) 178, 245, 602, 889
BaeGI GKGCMC 2 cut(s) 397, 1309
BalI TGGCCA 1 cut(s) 1013
BamHI GGATCC 2 cut(s) 1168, 1261
BanI GGYRCC 3 cut(s) 242, 848, 1078
BauI CACGAG 1 cut(s) 331
BbrPI CACGTG 1 cut(s) 1292
BbvI GCAGC 2 cut(s) 381, 488
BccI CCATC 2 cut(s) 223, 1222
BceAI ACGGC 1 cut(s) 862
BcgI CGANNNNNNTGC 2 cut(s) 968, 1002
BciT130I CCWGG 2 cut(s) 1367, 1500
BclI TGATCA 3 cut(s) 250, 627, 1333
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 3 cut(s) 162, 208, 1520
BfaI CTAG 2 cut(s) 812, 1050
BfmI CTRYAG 3 cut(s) 573, 921, 1126
BfoI RGCGCY 1 cut(s) 902
BfuAI ACCTGC 1 cut(s) 1198
BglI GCCNNNNNGGC 1 cut(s) 846
BisI GCNGC 4 cut(s) 234, 370, 477, 743
BlsI GCNGC 4 cut(s) 235, 371, 478, 744
Bme1390I CCNGG 3 cut(s) 10, 1367, 1500
BmgT120I GGNCC 2 cut(s) 831, 1353
BmiI GGNNCC 6 cut(s) 244, 832, 850, 1080, 1170, 1263
BmrFI CCNGG 3 cut(s) 10, 1367, 1500
BmrI ACTGGG 2 cut(s) 176, 1278
BmsI GCATC 1 cut(s) 768
BmuI ACTGGG 2 cut(s) 176, 1278
BoxI GACNNNNGTC 1 cut(s) 1052
BplI GAGNNNNNCTC 2 cut(s) 142, 174
BpmI CTGGAG 1 cut(s) 1529
Bpu10I CCTNAGC 2 cut(s) 237, 894
BpuMI CCSGG 1 cut(s) 10
Bsa29I ATCGAT 1 cut(s) 341
BsaAI YACGTR 1 cut(s) 1292
BsaJI CCNNGG 4 cut(s) 990, 1248, 1499, 1534
BsaXI ACNNNNNCTCC 2 cut(s) 456, 486
Bsc4I CCNNNNNNNGG 3 cut(s) 491, 858, 859
Bse1I ACTGG 5 cut(s) 182, 533, 1014, 1102, 1284
Bse3DI GCAATG 1 cut(s) 824
BseBI CCWGG 2 cut(s) 1367, 1500
BseCI ATCGAT 1 cut(s) 341
BseDI CCNNGG 4 cut(s) 990, 1248, 1499, 1534
BseGI GGATG 2 cut(s) 5, 783
BseLI CCNNNNNNNGG 3 cut(s) 491, 858, 859
BseMI GCAATG 1 cut(s) 824
BseMII CTCAG 2 cut(s) 251, 630
BseNI ACTGG 5 cut(s) 182, 533, 1014, 1102, 1284
BseSI GKGCMC 2 cut(s) 397, 1309
BseXI GCAGC 2 cut(s) 381, 488
BsgI GTGCAG 1 cut(s) 388
BshFI GGCC 5 cut(s) 710, 833, 1013, 1185, 1354
BshNI GGYRCC 3 cut(s) 242, 848, 1078
BshVI ATCGAT 1 cut(s) 341
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 2 cut(s) 445, 1075
BslI CCNNNNNNNGG 3 cut(s) 491, 858, 859
BsmAI GTCTC 3 cut(s) 162, 208, 1520
BsmFI GGGAC 2 cut(s) 445, 1075
BsnI GGCC 5 cut(s) 710, 833, 1013, 1185, 1354
Bsp1286I GDGCHC 2 cut(s) 397, 1309
Bsp19I CCATGG 1 cut(s) 1534
BspACI CCGC 2 cut(s) 233, 742
BspANI GGCC 5 cut(s) 710, 833, 1013, 1185, 1354
BspCNI CTCAG 2 cut(s) 250, 631
BspDI ATCGAT 1 cut(s) 341
BspHI TCATGA 2 cut(s) 385, 1336
BspLI GGNNCC 6 cut(s) 244, 832, 850, 1080, 1170, 1263
BspMAI CTGCAG 1 cut(s) 577
BspMI ACCTGC 1 cut(s) 1198
BspPI GGATC 9 cut(s) 109, 341, 552, 1163, 1176, 1256, 1269, 1419, 1512
BspQI GCTCTTC 2 cut(s) 1109, 1237
BspT107I GGYRCC 3 cut(s) 242, 848, 1078
BsrDI GCAATG 1 cut(s) 824
BsrI ACTGG 5 cut(s) 182, 533, 1014, 1102, 1284
BssECI CCNNGG 4 cut(s) 990, 1248, 1499, 1534
BssSI CACGAG 1 cut(s) 331
BssT1I CCWWGG 2 cut(s) 990, 1534
Bst2BI CACGAG 1 cut(s) 331
Bst2UI CCWGG 2 cut(s) 1367, 1500
Bst4CI ACNGT 2 cut(s) 408, 436
Bst6I CTCTTC 2 cut(s) 1109, 1237
BstBAI YACGTR 1 cut(s) 1292
BstC8I GCNNGC 5 cut(s) 497, 623, 678, 868, 1441
BstDEI CTNAG 5 cut(s) 237, 398, 539, 639, 894
BstDSI CCRYGG 1 cut(s) 1534
BstF5I GGATG 2 cut(s) 5, 783
BstH2I RGCGCY 1 cut(s) 902
BstHHI GCGC 1 cut(s) 901
BstMAI GTCTC 3 cut(s) 162, 208, 1520
BstMWI GCNNNNNNNGC 2 cut(s) 846, 1244
BstNI CCWGG 2 cut(s) 1367, 1500
BstPAI GACNNNNGTC 1 cut(s) 1052
BstSCI CCNGG 3 cut(s) 8, 1365, 1498
BstSFI CTRYAG 3 cut(s) 573, 921, 1126
BstSLI GKGCMC 2 cut(s) 397, 1309
BstV1I GCAGC 2 cut(s) 381, 488
BstX2I RGATCY 4 cut(s) 544, 1168, 1261, 1504
BstXI CCANNNNNNTGG 1 cut(s) 1021
BstYI RGATCY 4 cut(s) 544, 1168, 1261, 1504
Bsu15I ATCGAT 1 cut(s) 341
BsuRI GGCC 5 cut(s) 710, 833, 1013, 1185, 1354
BsuTUI ATCGAT 1 cut(s) 341
BtgI CCRYGG 1 cut(s) 1534
BtsCI GGATG 2 cut(s) 5, 783
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 4 cut(s) 174, 371, 526, 654
BveI ACCTGC 1 cut(s) 1198
Cac8I GCNNGC 5 cut(s) 497, 623, 678, 868, 1441
CciI TCATGA 2 cut(s) 385, 1336
CfoI GCGC 1 cut(s) 901
Cfr13I GGNCC 2 cut(s) 831, 1353
ClaI ATCGAT 1 cut(s) 341
Csp6I GTAC 5 cut(s) 243, 278, 888, 1287, 1434
CviQI GTAC 5 cut(s) 243, 278, 888, 1287, 1434
DdeI CTNAG 5 cut(s) 237, 398, 539, 639, 894
EaeI YGGCCR 2 cut(s) 1011, 1183
Eam1104I CTCTTC 2 cut(s) 1109, 1237
EarI CTCTTC 2 cut(s) 1109, 1237
Eco130I CCWWGG 2 cut(s) 990, 1534
Eco32I GATATC 1 cut(s) 214
Eco72I CACGTG 1 cut(s) 1292
EcoRI GAATTC 1 cut(s) 301
EcoRII CCWGG 2 cut(s) 1365, 1498
EcoRV GATATC 1 cut(s) 214
EcoT14I CCWWGG 2 cut(s) 990, 1534
ErhI CCWWGG 2 cut(s) 990, 1534
FaqI GGGAC 2 cut(s) 445, 1075
FbaI TGATCA 3 cut(s) 250, 627, 1333
FblI GTMKAC 1 cut(s) 1482
Fnu4HI GCNGC 4 cut(s) 234, 370, 477, 743
FokI GGATG 1 cut(s) 790
Fsp4HI GCNGC 4 cut(s) 234, 370, 477, 743
FspBI CTAG 2 cut(s) 812, 1050
GlaI GCGC 1 cut(s) 900
GluI GCNGC 4 cut(s) 234, 370, 477, 743
GsuI CTGGAG 1 cut(s) 1529
HaeII RGCGCY 1 cut(s) 902
HaeIII GGCC 5 cut(s) 710, 833, 1013, 1185, 1354
HapII CCGG 1 cut(s) 9
HhaI GCGC 1 cut(s) 901
Hin6I GCGC 1 cut(s) 899
HinP1I GCGC 1 cut(s) 899
HincII GTYRAC 1 cut(s) 1483
HindII GTYRAC 1 cut(s) 1483
HinfI GANTC 7 cut(s) 361, 733, 880, 1053, 1340, 1429, 1454
HpaII CCGG 1 cut(s) 9
HphI GGTGA 4 cut(s) 178, 245, 602, 889
Hpy188I TCNGA 5 cut(s) 150, 307, 1000, 1345, 1525
Hpy188III TCNNGA 8 cut(s) 159, 386, 812, 1029, 1045, 1337, 1406, 1508
HpyAV CCTTC 6 cut(s) 413, 758, 868, 1158, 1410, 1456
HpyCH4III ACNGT 2 cut(s) 408, 436
HpyCH4IV ACGT 2 cut(s) 1291, 1303
HpyCH4V TGCA 8 cut(s) 101, 369, 476, 550, 575, 759, 1238, 1319
HpyF10VI GCNNNNNNNGC 2 cut(s) 846, 1244
HpyF3I CTNAG 5 cut(s) 237, 398, 539, 639, 894
HpySE526I ACGT 2 cut(s) 1291, 1303
HspAI GCGC 1 cut(s) 899
KpnI GGTACC 1 cut(s) 246
Ksp22I TGATCA 3 cut(s) 250, 627, 1333
LguI GCTCTTC 2 cut(s) 1109, 1237
Lsp1109I GCAGC 2 cut(s) 381, 488
LweI GCATC 1 cut(s) 768
MaeI CTAG 2 cut(s) 812, 1050
MaeII ACGT 2 cut(s) 1291, 1303
MaeIII GTNAC 5 cut(s) 184, 524, 752, 1037, 1156
MboII GAAGA 6 cut(s) 58, 174, 322, 428, 1126, 1254
MflI RGATCY 4 cut(s) 544, 1168, 1261, 1504
MhlI GDGCHC 2 cut(s) 397, 1309
MlsI TGGCCA 1 cut(s) 1013
MluCI AATT 8 cut(s) 35, 81, 262, 301, 323, 375, 551, 689
MluNI TGGCCA 1 cut(s) 1013
MlyI GAGTC 3 cut(s) 370, 1062, 1438
Mox20I TGGCCA 1 cut(s) 1013
MroXI GAANNNNTTC 1 cut(s) 768
MscI TGGCCA 1 cut(s) 1013
MseI TTAA 4 cut(s) 662, 1106, 1278, 1298
MslI CAYNNNNRTG 3 cut(s) 875, 1324, 1448
Msp20I TGGCCA 1 cut(s) 1013
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 3 cut(s) 10, 1367, 1500
MvaI CCWGG 2 cut(s) 1367, 1500
MwoI GCNNNNNNNGC 2 cut(s) 846, 1244
NciI CCSGG 1 cut(s) 10
NcoI CCATGG 1 cut(s) 1534
NlaIV GGNNCC 6 cut(s) 244, 832, 850, 1080, 1170, 1263
NmeAIII GCCGAG 1 cut(s) 1273
NmuCI GTSAC 3 cut(s) 184, 524, 1037
OliI CACNNNNGTG 1 cut(s) 1324
PagI TCATGA 2 cut(s) 385, 1336
PciSI GCTCTTC 2 cut(s) 1109, 1237
PcsI WCGNNNNNNNCGW 2 cut(s) 338, 1411
PdmI GAANNNNTTC 1 cut(s) 768
PfeI GAWTC 4 cut(s) 733, 880, 1340, 1454
PfoI TCCNGGA 1 cut(s) 8
PkrI GCNGC 4 cut(s) 235, 371, 478, 744
PleI GAGTC 3 cut(s) 369, 1061, 1437
PmaCI CACGTG 1 cut(s) 1292
PmlI CACGTG 1 cut(s) 1292
PpsI GAGTC 3 cut(s) 369, 1061, 1437
Ppu21I YACGTR 1 cut(s) 1292
PshAI GACNNNNGTC 1 cut(s) 1052
Psp6I CCWGG 2 cut(s) 1365, 1498
PspCI CACGTG 1 cut(s) 1292
PspGI CCWGG 2 cut(s) 1365, 1498
PspN4I GGNNCC 6 cut(s) 244, 832, 850, 1080, 1170, 1263
PspPI GGNCC 2 cut(s) 831, 1353
PstI CTGCAG 1 cut(s) 577
PsuI RGATCY 4 cut(s) 544, 1168, 1261, 1504
RsaI GTAC 5 cut(s) 244, 279, 889, 1288, 1435
RsaNI GTAC 5 cut(s) 243, 278, 888, 1287, 1434
RseI CAYNNNNRTG 3 cut(s) 875, 1324, 1448
SalI GTCGAC 1 cut(s) 1481
SapI GCTCTTC 2 cut(s) 1109, 1237
SaqAI TTAA 4 cut(s) 662, 1106, 1278, 1298
SatI GCNGC 4 cut(s) 234, 370, 477, 743
Sau96I GGNCC 2 cut(s) 831, 1353
SchI GAGTC 3 cut(s) 370, 1062, 1438
ScrFI CCNGG 3 cut(s) 10, 1367, 1500
SduI GDGCHC 2 cut(s) 397, 1309
SfaNI GCATC 1 cut(s) 768
SfcI CTRYAG 3 cut(s) 573, 921, 1126
SmiMI CAYNNNNRTG 3 cut(s) 875, 1324, 1448
Sse9I AATT 8 cut(s) 35, 81, 262, 301, 323, 375, 551, 689
SsiI CCGC 2 cut(s) 233, 742
SspMI CTAG 2 cut(s) 812, 1050
StyD4I CCNGG 3 cut(s) 8, 1365, 1498
StyI CCWWGG 2 cut(s) 990, 1534
TaaI ACNGT 2 cut(s) 408, 436
TaiI ACGT 2 cut(s) 1294, 1306
TaqI TCGA 5 cut(s) 160, 341, 1383, 1414, 1482
TasI AATT 8 cut(s) 35, 81, 262, 301, 323, 375, 551, 689
TatI WGTACW 2 cut(s) 277, 1286
TauI GCSGC 2 cut(s) 236, 745
TfiI GAWTC 4 cut(s) 733, 880, 1340, 1454
Tru1I TTAA 4 cut(s) 662, 1106, 1278, 1298
Tru9I TTAA 4 cut(s) 662, 1106, 1278, 1298
TscAI CASTG 4 cut(s) 174, 371, 533, 654
TseFI GTSAC 3 cut(s) 184, 524, 1037
TseI GCWGC 2 cut(s) 369, 476
Tsp45I GTSAC 3 cut(s) 184, 524, 1037
TspDTI ATGAA 7 cut(s) 132, 260, 804, 887, 930, 1407, 1475
TspRI CASTG 4 cut(s) 174, 371, 533, 654
XapI RAATTY 2 cut(s) 301, 689
XbaI TCTAGA 1 cut(s) 811
XcmI CCANNNNNNNNNTGG 1 cut(s) 1447
XmiI GTMKAC 1 cut(s) 1482
XmnI GAANNNNTTC 1 cut(s) 768
XspI CTAG 2 cut(s) 812, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.