Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0008223

Physical Location & Seq

Genomic Coordinates Reverse (-)

73685004 .. 73688324

Gene Structure 3321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG512700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGTCGTCTGAGAGTTCTTTGAACGTGCAATTATCAAAGAAGATATTGGGTATAAAACTATGGGTTTTGATCTGTATTAGTGTTGGTGCATTTATTATTCTGATCCTATGTTTCTTATCTATCTGGGTGACATTTCGGAGGAAATCTAGAAAATCTGTAGACAAGTTTTCAGTCAACCAAATACCAAATGTCTCTAAAGATATCAGGATTGATAGGGTGGGGACTCAGAGTACACATGATCACCCTGATAATTTATTTCTTACAGTACATGATAAAGCAACTGATAAGAATTCAGAGAACATGTTAGCTCATTTGGGAATGAGCAAATCAAGTGACCCTGATAACATGAGTCAGTGCAGTTCAGCTTATCACCATGAGAGGGCATTTAGTTCACAGTCAGGGGACGAAGGAAGCTCCGGGACTGTGCGAAAGCAGTCGTCATTGTCACATGGAGGAGTTGTGAATCTTGTTGAGTGGCTAAAAATGATGGTAGGTGCAAGAAGAGCAGAGGAGGTTGTGGATCCAAACCTTGAAGTAAAACCCAGTACACGTTCTTTAAAACGTGCCCTTTTGGTTGCACTTAGGTGTGTTGATCATGATGCAGAGAACAGACCTAAAATGAGCCAGGTTGTACGTATGCTTGAAGCTGATGAATACCCATCTCGTGAGGATCGAAGGAACAGAAAGACTCGGACAACCAGCATGGAAATTGAATCTTTGAAGGAAAATTCTGTCTCAGGTGACACAGAAAACAAGCCAGAGGATCTGGAAAGCCAAGTAGCCGAGACGACTCATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

266

Amino Acids

29.82

Weight (kDa)

7.74

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42960 AT2G42960 AT2G42960 AT2G42960 AT2G42960 AT3G59110
fragaria_vesca	FvH4_6g38380 FvH4_6g38380
malus_domestica	MD09G1150400.v1.1 MD17G1138000.v1.1
prunus_persica	Prupe.3G174500_v2.0.a1
pyrus_communis	pycom09g07030 pycom17g13120
rosa_chinensis	RchiOBHm_Chr2g0151691
rosa_laevigata	RLG00000020569
rosa_multiflora	Rmu_sc0005294.1_g000046
rosa_roxburghii	Rroxscaffold_2G00096250
rosa_rugosa	Rorug02G0428100
rosa_samantha	Rh2AG488900 Rh2BG501600 Rh2CG475500 Rh2DG512700
rosa_wichuraiana	Rw2G040090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AclWI	GGATC	5 cut(s)	97, 515, 528, 678, 771
AcsI	RAATTY	2 cut(s)	289, 727
AfaI	GTAC	4 cut(s)	232, 267, 547, 633
AfiI	CCNNNNNNNGG	1 cut(s)	379
AflIII	ACRYGT	2 cut(s)	300, 548
AgsI	TTSAA	5 cut(s)	22, 533, 644, 713, 721
AjnI	CCWGG	1 cut(s)	624
AleI	CACNNNNGTG	1 cut(s)	583
AluBI	AGCT	4 cut(s)	308, 365, 414, 647
AluI	AGCT	4 cut(s)	308, 365, 414, 647
Alw26I	GTCTC	3 cut(s)	196, 739, 779
AlwI	GGATC	5 cut(s)	97, 515, 528, 678, 771
ApoI	RAATTY	2 cut(s)	289, 727
AsuC2I	CCSGG	1 cut(s)	418
AsuHPI	GGTGA	4 cut(s)	139, 233, 362, 752
BaeGI	GKGCMC	1 cut(s)	568
BamHI	GGATCC	1 cut(s)	520
BauI	CACGAG	1 cut(s)	663
BccI	CCATC	2 cut(s)	481, 667
BciT130I	CCWGG	1 cut(s)	626
BclI	TGATCA	2 cut(s)	238, 592
BcnI	CCSGG	1 cut(s)	418
BcoDI	GTCTC	3 cut(s)	196, 739, 779
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	156
Bme1390I	CCNGG	2 cut(s)	418, 626
BmiI	GGNNCC	1 cut(s)	522
BmrFI	CCNGG	2 cut(s)	418, 626
BmrI	ACTGGG	1 cut(s)	537
BmsI	GCATC	1 cut(s)	589
BmuI	ACTGGG	1 cut(s)	537
BpuMI	CCSGG	1 cut(s)	418
BsaAI	YACGTR	1 cut(s)	635
BsaXI	ACNNNNNCTCC	2 cut(s)	444, 474
Bsc4I	CCNNNNNNNGG	1 cut(s)	379
Bse1I	ACTGG	1 cut(s)	543
BseBI	CCWGG	1 cut(s)	626
BseLI	CCNNNNNNNGG	1 cut(s)	379
BseMII	CTCAG	2 cut(s)	239, 750
BseNI	ACTGG	1 cut(s)	543
BseRI	GAGGAG	2 cut(s)	468, 524
BseSI	GKGCMC	1 cut(s)	568
BsgI	GTGCAG	1 cut(s)	376
BsiSI	CCGG	1 cut(s)	417
BslFI	GGGAC	3 cut(s)	235, 416, 433
BslI	CCNNNNNNNGG	1 cut(s)	379
BsmAI	GTCTC	3 cut(s)	196, 739, 779
BsmBI	CGTCTC	1 cut(s)	779
BsmFI	GGGAC	3 cut(s)	235, 416, 433
Bsp1286I	GDGCHC	1 cut(s)	568
Bsp143I	GATC	7 cut(s)	69, 102, 238, 520, 592, 670, 763
BspCNI	CTCAG	2 cut(s)	238, 749
BspHI	TCATGA	1 cut(s)	595
BspLI	GGNNCC	1 cut(s)	522
BspPI	GGATC	5 cut(s)	97, 515, 528, 678, 771
BspQI	GCTCTTC	1 cut(s)	496
BsrI	ACTGG	1 cut(s)	543
BssMI	GATC	7 cut(s)	69, 102, 238, 520, 592, 670, 763
BssSI	CACGAG	1 cut(s)	663
Bst2BI	CACGAG	1 cut(s)	663
Bst2UI	CCWGG	1 cut(s)	626
Bst4CI	ACNGT	3 cut(s)	265, 396, 424
Bst6I	CTCTTC	1 cut(s)	496
BstBAI	YACGTR	1 cut(s)	635
BstDEI	CTNAG	4 cut(s)	9, 225, 581, 736
BstKTI	GATC	7 cut(s)	72, 105, 241, 523, 595, 673, 766
BstMAI	GTCTC	3 cut(s)	196, 739, 779
BstMBI	GATC	7 cut(s)	69, 102, 238, 520, 592, 670, 763
BstMWI	GCNNNNNNNGC	1 cut(s)	503
BstNI	CCWGG	1 cut(s)	626
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	2 cut(s)	416, 624
BstSFI	CTRYAG	1 cut(s)	156
BstSLI	GKGCMC	1 cut(s)	568
BstSNI	TACGTA	1 cut(s)	635
BstX2I	RGATCY	2 cut(s)	520, 763
BstYI	RGATCY	2 cut(s)	520, 763
BtsIMutI	CAGTG	1 cut(s)	359
CciI	TCATGA	1 cut(s)	595
Csp6I	GTAC	4 cut(s)	231, 266, 546, 632
CviAII	CATG	9 cut(s)	236, 269, 301, 346, 374, 449, 596, 703, 794
CviJI	RGCY	9 cut(s)	308, 365, 414, 478, 624, 647, 757, 774, 782
CviKI_1	RGCY	9 cut(s)	308, 365, 414, 478, 624, 647, 757, 774, 782
CviQI	GTAC	4 cut(s)	231, 266, 546, 632
DdeI	CTNAG	4 cut(s)	9, 225, 581, 736
DpnI	GATC	7 cut(s)	71, 104, 240, 522, 594, 672, 765
DpnII	GATC	7 cut(s)	69, 102, 238, 520, 592, 670, 763
DraI	TTTAAA	1 cut(s)	558
Eam1104I	CTCTTC	1 cut(s)	496
EarI	CTCTTC	1 cut(s)	496
Eco105I	TACGTA	1 cut(s)	635
Eco32I	GATATC	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	624
EcoRV	GATATC	1 cut(s)	202
EcoT22I	ATGCAT	1 cut(s)	799
Esp3I	CGTCTC	1 cut(s)	779
FaeI	CATG	9 cut(s)	239, 272, 304, 349, 377, 452, 599, 706, 797
FaqI	GGGAC	3 cut(s)	235, 416, 433
FatI	CATG	9 cut(s)	235, 268, 300, 345, 373, 448, 595, 702, 793
FbaI	TGATCA	2 cut(s)	238, 592
FblI	GTMKAC	1 cut(s)	159
FspBI	CTAG	1 cut(s)	147
HapII	CCGG	1 cut(s)	417
Hin1II	CATG	9 cut(s)	239, 272, 304, 349, 377, 452, 599, 706, 797
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	6 cut(s)	223, 349, 463, 688, 713, 790
HpaII	CCGG	1 cut(s)	417
HphI	GGTGA	4 cut(s)	139, 233, 362, 752
Hpy166II	GTNNAC	5 cut(s)	160, 175, 233, 392, 548
Hpy188I	TCNGA	6 cut(s)	10, 102, 138, 228, 295, 693
Hpy188III	TCNNGA	5 cut(s)	147, 205, 596, 665, 767
Hpy8I	GTNNAC	5 cut(s)	160, 175, 233, 392, 548
HpyAV	CCTTC	3 cut(s)	401, 669, 715
HpyCH4III	ACNGT	3 cut(s)	265, 396, 424
HpyCH4IV	ACGT	4 cut(s)	24, 550, 562, 634
HpyCH4V	TGCA	7 cut(s)	28, 89, 357, 497, 578, 602, 797
HpyF10VI	GCNNNNNNNGC	1 cut(s)	503
HpyF3I	CTNAG	4 cut(s)	9, 225, 581, 736
HpySE526I	ACGT	4 cut(s)	24, 550, 562, 634
Hsp92II	CATG	9 cut(s)	239, 272, 304, 349, 377, 452, 599, 706, 797
Ksp22I	TGATCA	2 cut(s)	238, 592
Kzo9I	GATC	7 cut(s)	69, 102, 238, 520, 592, 670, 763
LguI	GCTCTTC	1 cut(s)	496
LmnI	GCTCC	1 cut(s)	419
LweI	GCATC	1 cut(s)	589
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	4 cut(s)	24, 550, 562, 634
MaeIII	GTNAC	4 cut(s)	127, 332, 444, 740
MalI	GATC	7 cut(s)	71, 104, 240, 522, 594, 672, 765
MboI	GATC	7 cut(s)	69, 102, 238, 520, 592, 670, 763
MboII	GAAGA	2 cut(s)	52, 513
MflI	RGATCY	2 cut(s)	520, 763
MhlI	GDGCHC	1 cut(s)	568
MluCI	AATT	5 cut(s)	29, 250, 289, 708, 727
MlyI	GAGTC	4 cut(s)	217, 358, 682, 784
MnlI	CCTC	7 cut(s)	132, 372, 446, 502, 505, 661, 754
Mph1103I	ATGCAT	1 cut(s)	799
MseI	TTAA	1 cut(s)	557
MslI	CAYNNNNRTG	1 cut(s)	583
MspI	CCGG	1 cut(s)	417
MspR9I	CCNGG	2 cut(s)	418, 626
MvaI	CCWGG	1 cut(s)	626
MwoI	GCNNNNNNNGC	1 cut(s)	503
NciI	CCSGG	1 cut(s)	418
NdeII	GATC	7 cut(s)	69, 102, 238, 520, 592, 670, 763
NlaIII	CATG	9 cut(s)	239, 272, 304, 349, 377, 452, 599, 706, 797
NlaIV	GGNNCC	1 cut(s)	522
NmuCI	GTSAC	4 cut(s)	127, 332, 444, 740
NsiI	ATGCAT	1 cut(s)	799
NspI	RCATGY	1 cut(s)	304
OliI	CACNNNNGTG	1 cut(s)	583
PagI	TCATGA	1 cut(s)	595
PciI	ACATGT	1 cut(s)	300
PciSI	GCTCTTC	1 cut(s)	496
PcsI	WCGNNNNNNNCGW	1 cut(s)	670
PfeI	GAWTC	2 cut(s)	463, 713
PfoI	TCCNGGA	1 cut(s)	416
PleI	GAGTC	4 cut(s)	217, 357, 682, 784
PpsI	GAGTC	4 cut(s)	217, 357, 682, 784
Ppu21I	YACGTR	1 cut(s)	635
PscI	ACATGT	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	624
PspGI	CCWGG	1 cut(s)	624
PspN4I	GGNNCC	1 cut(s)	522
PsuI	RGATCY	2 cut(s)	520, 763
RsaI	GTAC	4 cut(s)	232, 267, 547, 633
RsaNI	GTAC	4 cut(s)	231, 266, 546, 632
RseI	CAYNNNNRTG	1 cut(s)	583
SapI	GCTCTTC	1 cut(s)	496
SaqAI	TTAA	1 cut(s)	557
Sau3AI	GATC	7 cut(s)	69, 102, 238, 520, 592, 670, 763
SchI	GAGTC	4 cut(s)	217, 358, 682, 784
ScrFI	CCNGG	2 cut(s)	418, 626
SduI	GDGCHC	1 cut(s)	568
SfaNI	GCATC	1 cut(s)	589
SfcI	CTRYAG	1 cut(s)	156
SmiMI	CAYNNNNRTG	1 cut(s)	583
SnaBI	TACGTA	1 cut(s)	635
Sse9I	AATT	5 cut(s)	29, 250, 289, 708, 727
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	416, 624
TaaI	ACNGT	3 cut(s)	265, 396, 424
TaiI	ACGT	4 cut(s)	27, 553, 565, 637
TaqI	TCGA	1 cut(s)	673
TasI	AATT	5 cut(s)	29, 250, 289, 708, 727
TatI	WGTACW	3 cut(s)	230, 265, 545
TfiI	GAWTC	2 cut(s)	463, 713
Tru1I	TTAA	1 cut(s)	557
Tru9I	TTAA	1 cut(s)	557
TscAI	CASTG	1 cut(s)	359
TseFI	GTSAC	4 cut(s)	127, 332, 444, 740
Tsp45I	GTSAC	4 cut(s)	127, 332, 444, 740
TspDTI	ATGAA	1 cut(s)	666
TspRI	CASTG	1 cut(s)	359
XapI	RAATTY	2 cut(s)	289, 727
XbaI	TCTAGA	1 cut(s)	146
XceI	RCATGY	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	1 cut(s)	147
Zsp2I	ATGCAT	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.