Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0008223

Physical Location & Seq

Genomic Coordinates Reverse (-)

64059855 .. 64063154

Gene Structure 3300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG475500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGTCGTCTGAGAGTTCTTTGAATGTGCAATTATCAAAGAAGATATTGGGTATAAAACTATGGGTTTTGATCTGTATAAGTGTTGGTGCATTTATTATTCTGATCCTATGTTTCTTATCTATCTGGGTGACATTTCGGAGGAAATCTAGAAAATCTGTAGACAAGTTTTCAGTCAACCAAATACCAAATGTCTCTAAAGATATCAGGATTGATAGGGTGGGGGCTCAGAGTACAAATGATCACCCTGATAATTTATTTCTTACAGTACATGATAAAGCAACTGATAAGAATTCAGAGAACATGTTAGCTCATTTGGGAATGAGCAAATCAAGTGACCCTGATAACATGAGTCAGTGCAGTTCAGTTTATCACCATGAGAGGGCATTTAGTTCACAGTCAGGGGACGAAGGAAGCTCCGGGACTGTGCGAAAGCAGTCGTCATTGTCACATGGAGGAGTTGTAACGGCCTCTCCTTTAATTGGTTTGCCAGAAGTTTCTCATCTTGGTTGGGGCCACTGGTTTACTCTTAGGGATCTGCAATTTGCTACGAATCGATTTTCTGCTGAAAATGTACTTGGTGAGGGTGGATATGGGGTTGTTTACAGGGGCAGACTGATAAATGGAACTGAGGTGGCAGTGAAAAAGCTTCTAAATAATATGGGGCAGGCGGAGAAAGAATTTAGGGTTGAAGTGGAGGCCATAGGCCATGTTCGGCATAAGAATCTTGTGCGGCTGCTTGGTTATTGCATTGAAGGGGTTCACAGGTTGGTGAATCTTGTTGAGTGGCTAAAAATGATGGTAGGTGCAAGAAGAGCAGAGGAGGTTGTGGATCCAAACCTTGAAGTAAAACCCACTACACGTTCTTTAAAACGTGCCCTTTTGGTTGCACTTAGGTGTGTTGATCATGATGCAGAGAACAGACCTAAAATGAGCCAGGTTGTACGTATGCTTGAAGCTGATGAATACCCATCTCGTGAGGATCGAAGGAACAGAAAGACTCGGACAACCAGCATGGAAATTGAATCTTTGAAGGAAAATTCTGTCTCAGGTGACACAGAAAACAAGCCAGAGGATCTGGAAAGCCAAGTAGCCGAGACAACTCATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

369

Amino Acids

41.31

Weight (kDa)

8.51

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	187 - 256	2.8e-07	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	188 - 254	4.2e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42960 AT2G42960 AT2G42960 AT2G42960 AT2G42960 AT3G59110
fragaria_vesca	FvH4_6g38380 FvH4_6g38380
malus_domestica	MD09G1150400.v1.1 MD17G1138000.v1.1
prunus_persica	Prupe.3G174500_v2.0.a1
pyrus_communis	pycom09g07030 pycom17g13120
rosa_chinensis	RchiOBHm_Chr2g0151691
rosa_laevigata	RLG00000020569
rosa_multiflora	Rmu_sc0005294.1_g000046
rosa_roxburghii	Rroxscaffold_2G00096250
rosa_rugosa	Rorug02G0428100
rosa_samantha	Rh2AG488900 Rh2BG501600 Rh2CG475500 Rh2DG512700
rosa_wichuraiana	Rw2G040090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	2 cut(s)	668, 730
AclWI	GGATC	6 cut(s)	97, 540, 824, 837, 987, 1080
AcsI	RAATTY	3 cut(s)	289, 677, 1036
AfaI	GTAC	4 cut(s)	232, 267, 573, 942
AfiI	CCNNNNNNNGG	2 cut(s)	379, 479
AflIII	ACRYGT	2 cut(s)	300, 857
AgsI	TTSAA	7 cut(s)	22, 689, 752, 842, 953, 1022, 1030
AjnI	CCWGG	1 cut(s)	933
AjuI	GAANNNNNNNTTGG	2 cut(s)	558, 590
AleI	CACNNNNGTG	1 cut(s)	892
AluBI	AGCT	4 cut(s)	308, 414, 646, 956
AluI	AGCT	4 cut(s)	308, 414, 646, 956
Alw26I	GTCTC	3 cut(s)	196, 1048, 1088
AlwI	GGATC	6 cut(s)	97, 540, 824, 837, 987, 1080
AoxI	GGCC	4 cut(s)	465, 511, 696, 703
ApeKI	GCWGC	1 cut(s)	733
ApoI	RAATTY	3 cut(s)	289, 677, 1036
Asp700I	GAANNNNTTC	1 cut(s)	756
AspS9I	GGNCC	1 cut(s)	511
AsuC2I	CCSGG	1 cut(s)	418
AsuHPI	GGTGA	6 cut(s)	139, 233, 362, 590, 781, 1061
BaeGI	GKGCMC	1 cut(s)	877
BamHI	GGATCC	1 cut(s)	829
BanII	GRGCYC	1 cut(s)	226
BauI	CACGAG	1 cut(s)	972
BbvI	GCAGC	1 cut(s)	720
BccI	CCATC	2 cut(s)	790, 976
BceAI	ACGGC	1 cut(s)	480
BciT130I	CCWGG	1 cut(s)	935
BclI	TGATCA	2 cut(s)	238, 901
BcnI	CCSGG	1 cut(s)	418
BcoDI	GTCTC	3 cut(s)	196, 1048, 1088
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	156
BisI	GCNGC	2 cut(s)	731, 734
BlsI	GCNGC	2 cut(s)	732, 735
Bme1390I	CCNGG	2 cut(s)	418, 935
BmgT120I	GGNCC	1 cut(s)	511
BmiI	GGNNCC	2 cut(s)	512, 831
BmrFI	CCNGG	2 cut(s)	418, 935
BmsI	GCATC	1 cut(s)	898
BpuMI	CCSGG	1 cut(s)	418
Bsa29I	ATCGAT	1 cut(s)	553
BsaAI	YACGTR	1 cut(s)	944
BsaXI	ACNNNNNCTCC	4 cut(s)	444, 454, 474, 484
Bsc4I	CCNNNNNNNGG	2 cut(s)	379, 479
Bse1I	ACTGG	1 cut(s)	521
BseBI	CCWGG	1 cut(s)	935
BseCI	ATCGAT	1 cut(s)	553
BseLI	CCNNNNNNNGG	2 cut(s)	379, 479
BseMII	CTCAG	3 cut(s)	239, 618, 1059
BseNI	ACTGG	1 cut(s)	521
BseRI	GAGGAG	2 cut(s)	468, 833
BseSI	GKGCMC	1 cut(s)	877
BseXI	GCAGC	1 cut(s)	720
BsgI	GTGCAG	1 cut(s)	376
BshFI	GGCC	4 cut(s)	467, 513, 698, 705
BshVI	ATCGAT	1 cut(s)	553
BsiSI	CCGG	1 cut(s)	417
BslFI	GGGAC	2 cut(s)	416, 433
BslI	CCNNNNNNNGG	2 cut(s)	379, 479
BsmAI	GTCTC	3 cut(s)	196, 1048, 1088
BsmFI	GGGAC	2 cut(s)	416, 433
BsnI	GGCC	4 cut(s)	467, 513, 698, 705
Bsp1286I	GDGCHC	2 cut(s)	226, 877
Bsp143I	GATC	8 cut(s)	69, 102, 238, 532, 829, 901, 979, 1072
BspACI	CCGC	2 cut(s)	668, 730
BspANI	GGCC	4 cut(s)	467, 513, 698, 705
BspCNI	CTCAG	3 cut(s)	238, 619, 1058
BspDI	ATCGAT	1 cut(s)	553
BspHI	TCATGA	1 cut(s)	904
BspLI	GGNNCC	2 cut(s)	512, 831
BspPI	GGATC	6 cut(s)	97, 540, 824, 837, 987, 1080
BspQI	GCTCTTC	1 cut(s)	805
BsrI	ACTGG	1 cut(s)	521
BssMI	GATC	8 cut(s)	69, 102, 238, 532, 829, 901, 979, 1072
BssSI	CACGAG	1 cut(s)	972
Bst2BI	CACGAG	1 cut(s)	972
Bst2UI	CCWGG	1 cut(s)	935
Bst4CI	ACNGT	3 cut(s)	265, 396, 424
Bst6I	CTCTTC	1 cut(s)	805
BstBAI	YACGTR	1 cut(s)	944
BstC8I	GCNNGC	1 cut(s)	666
BstDEI	CTNAG	6 cut(s)	9, 225, 527, 627, 890, 1045
BstKTI	GATC	8 cut(s)	72, 105, 241, 535, 832, 904, 982, 1075
BstMAI	GTCTC	3 cut(s)	196, 1048, 1088
BstMBI	GATC	8 cut(s)	69, 102, 238, 532, 829, 901, 979, 1072
BstMWI	GCNNNNNNNGC	1 cut(s)	812
BstNI	CCWGG	1 cut(s)	935
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	2 cut(s)	416, 933
BstSFI	CTRYAG	1 cut(s)	156
BstSLI	GKGCMC	1 cut(s)	877
BstSNI	TACGTA	1 cut(s)	944
BstV1I	GCAGC	1 cut(s)	720
BstX2I	RGATCY	3 cut(s)	532, 829, 1072
BstYI	RGATCY	3 cut(s)	532, 829, 1072
Bsu15I	ATCGAT	1 cut(s)	553
BsuRI	GGCC	4 cut(s)	467, 513, 698, 705
BsuTUI	ATCGAT	1 cut(s)	553
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	3 cut(s)	359, 514, 642
Cac8I	GCNNGC	1 cut(s)	666
CciI	TCATGA	1 cut(s)	904
Cfr13I	GGNCC	1 cut(s)	511
ClaI	ATCGAT	1 cut(s)	553
Csp6I	GTAC	4 cut(s)	231, 266, 572, 941
CviAII	CATG	9 cut(s)	269, 301, 346, 374, 449, 707, 905, 1012, 1103
CviQI	GTAC	4 cut(s)	231, 266, 572, 941
DdeI	CTNAG	6 cut(s)	9, 225, 527, 627, 890, 1045
DpnI	GATC	8 cut(s)	71, 104, 240, 534, 831, 903, 981, 1074
DpnII	GATC	8 cut(s)	69, 102, 238, 532, 829, 901, 979, 1072
DraI	TTTAAA	1 cut(s)	867
Eam1104I	CTCTTC	1 cut(s)	805
EarI	CTCTTC	1 cut(s)	805
EciI	GGCGGA	1 cut(s)	683
Eco105I	TACGTA	1 cut(s)	944
Eco24I	GRGCYC	1 cut(s)	226
Eco32I	GATATC	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	933
EcoRV	GATATC	1 cut(s)	202
EcoT22I	ATGCAT	1 cut(s)	1108
EcoT38I	GRGCYC	1 cut(s)	226
FaeI	CATG	9 cut(s)	272, 304, 349, 377, 452, 710, 908, 1015, 1106
FaqI	GGGAC	2 cut(s)	416, 433
FatI	CATG	9 cut(s)	268, 300, 345, 373, 448, 706, 904, 1011, 1102
FbaI	TGATCA	2 cut(s)	238, 901
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	2 cut(s)	731, 734
FriOI	GRGCYC	1 cut(s)	226
Fsp4HI	GCNGC	2 cut(s)	731, 734
FspBI	CTAG	1 cut(s)	147
GluI	GCNGC	2 cut(s)	731, 734
HaeIII	GGCC	4 cut(s)	467, 513, 698, 705
HapII	CCGG	1 cut(s)	417
Hin1II	CATG	9 cut(s)	272, 304, 349, 377, 452, 710, 908, 1015, 1106
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	644
HinfI	GANTC	6 cut(s)	349, 550, 721, 772, 997, 1022
HpaII	CCGG	1 cut(s)	417
HphI	GGTGA	6 cut(s)	139, 233, 362, 590, 781, 1061
Hpy166II	GTNNAC	6 cut(s)	160, 175, 392, 522, 601, 760
Hpy188I	TCNGA	6 cut(s)	10, 102, 138, 228, 295, 1002
Hpy188III	TCNNGA	5 cut(s)	147, 205, 905, 974, 1076
Hpy8I	GTNNAC	6 cut(s)	160, 175, 392, 522, 601, 760
HpyAV	CCTTC	4 cut(s)	401, 746, 978, 1024
HpyCH4III	ACNGT	3 cut(s)	265, 396, 424
HpyCH4IV	ACGT	3 cut(s)	859, 871, 943
HpyCH4V	TGCA	9 cut(s)	28, 89, 357, 538, 747, 806, 887, 911, 1106
HpyF10VI	GCNNNNNNNGC	1 cut(s)	812
HpyF3I	CTNAG	6 cut(s)	9, 225, 527, 627, 890, 1045
HpySE526I	ACGT	3 cut(s)	859, 871, 943
Hsp92II	CATG	9 cut(s)	272, 304, 349, 377, 452, 710, 908, 1015, 1106
Ksp22I	TGATCA	2 cut(s)	238, 901
Kzo9I	GATC	8 cut(s)	69, 102, 238, 532, 829, 901, 979, 1072
LguI	GCTCTTC	1 cut(s)	805
LmnI	GCTCC	1 cut(s)	419
Lsp1109I	GCAGC	1 cut(s)	720
LweI	GCATC	1 cut(s)	898
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	3 cut(s)	859, 871, 943
MaeIII	GTNAC	5 cut(s)	127, 332, 444, 460, 1049
MalI	GATC	8 cut(s)	71, 104, 240, 534, 831, 903, 981, 1074
MboI	GATC	8 cut(s)	69, 102, 238, 532, 829, 901, 979, 1072
MboII	GAAGA	2 cut(s)	52, 822
MflI	RGATCY	3 cut(s)	532, 829, 1072
MhlI	GDGCHC	2 cut(s)	226, 877
MluCI	AATT	8 cut(s)	29, 250, 289, 477, 539, 677, 1017, 1036
MlyI	GAGTC	2 cut(s)	358, 991
Mph1103I	ATGCAT	1 cut(s)	1108
MroXI	GAANNNNTTC	1 cut(s)	756
MseI	TTAA	2 cut(s)	476, 866
MslI	CAYNNNNRTG	1 cut(s)	892
MspI	CCGG	1 cut(s)	417
MspR9I	CCNGG	2 cut(s)	418, 935
MvaI	CCWGG	1 cut(s)	935
MwoI	GCNNNNNNNGC	1 cut(s)	812
NciI	CCSGG	1 cut(s)	418
NdeII	GATC	8 cut(s)	69, 102, 238, 532, 829, 901, 979, 1072
NlaIII	CATG	9 cut(s)	272, 304, 349, 377, 452, 710, 908, 1015, 1106
NlaIV	GGNNCC	2 cut(s)	512, 831
NmuCI	GTSAC	4 cut(s)	127, 332, 444, 1049
NsiI	ATGCAT	1 cut(s)	1108
NspI	RCATGY	1 cut(s)	304
OliI	CACNNNNGTG	1 cut(s)	892
PagI	TCATGA	1 cut(s)	904
PciI	ACATGT	1 cut(s)	300
PciSI	GCTCTTC	1 cut(s)	805
PcsI	WCGNNNNNNNCGW	1 cut(s)	979
PdmI	GAANNNNTTC	1 cut(s)	756
PfeI	GAWTC	4 cut(s)	550, 721, 772, 1022
PfoI	TCCNGGA	1 cut(s)	416
PkrI	GCNGC	2 cut(s)	732, 735
PleI	GAGTC	2 cut(s)	357, 991
PpsI	GAGTC	2 cut(s)	357, 991
Ppu21I	YACGTR	1 cut(s)	944
PscI	ACATGT	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	933
PspGI	CCWGG	1 cut(s)	933
PspN4I	GGNNCC	2 cut(s)	512, 831
PspPI	GGNCC	1 cut(s)	511
PsuI	RGATCY	3 cut(s)	532, 829, 1072
RsaI	GTAC	4 cut(s)	232, 267, 573, 942
RsaNI	GTAC	4 cut(s)	231, 266, 572, 941
RseI	CAYNNNNRTG	1 cut(s)	892
SapI	GCTCTTC	1 cut(s)	805
SaqAI	TTAA	2 cut(s)	476, 866
SatI	GCNGC	2 cut(s)	731, 734
Sau3AI	GATC	8 cut(s)	69, 102, 238, 532, 829, 901, 979, 1072
Sau96I	GGNCC	1 cut(s)	511
SchI	GAGTC	2 cut(s)	358, 991
ScrFI	CCNGG	2 cut(s)	418, 935
SduI	GDGCHC	2 cut(s)	226, 877
SfaNI	GCATC	1 cut(s)	898
SfcI	CTRYAG	1 cut(s)	156
SmiMI	CAYNNNNRTG	1 cut(s)	892
SnaBI	TACGTA	1 cut(s)	944
Sse9I	AATT	8 cut(s)	29, 250, 289, 477, 539, 677, 1017, 1036
SsiI	CCGC	2 cut(s)	668, 730
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	416, 933
TaaI	ACNGT	3 cut(s)	265, 396, 424
TaiI	ACGT	3 cut(s)	862, 874, 946
TaqI	TCGA	2 cut(s)	553, 982
TasI	AATT	8 cut(s)	29, 250, 289, 477, 539, 677, 1017, 1036
TatI	WGTACW	3 cut(s)	230, 265, 571
TauI	GCSGC	1 cut(s)	733
TfiI	GAWTC	4 cut(s)	550, 721, 772, 1022
Tru1I	TTAA	2 cut(s)	476, 866
Tru9I	TTAA	2 cut(s)	476, 866
TscAI	CASTG	3 cut(s)	359, 521, 642
TseFI	GTSAC	4 cut(s)	127, 332, 444, 1049
TseI	GCWGC	1 cut(s)	733
Tsp45I	GTSAC	4 cut(s)	127, 332, 444, 1049
TspDTI	ATGAA	1 cut(s)	975
TspRI	CASTG	3 cut(s)	359, 521, 642
XapI	RAATTY	3 cut(s)	289, 677, 1036
XbaI	TCTAGA	1 cut(s)	146
XceI	RCATGY	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	159
XmnI	GAANNNNTTC	1 cut(s)	756
XspI	CTAG	1 cut(s)	147
Zsp2I	ATGCAT	1 cut(s)	1108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.