MD09G1150400.v1.1

receptor-like protein kinase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
11864047 .. 11868155
4109 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1150400.v1.1.491

Sequence Viewer

Length: 1536 bp
ATGTCATCCGGGAGTTCTTTGAATGTGGAATTATCGAAGAAGATAGGATTTTTGGGTTTGAAACTATGGGTTGTGATCGGTATATGTGTTGGTGCATTTATTGTTTCGATCCTATGTTTCTTATCTATATGGGTTTCATTTCGGCGGAAGTCTCGACGATCAGTGGACAAGTTCCCAGTCACCCAAATACCAAATGTCTCTAAAGATATCAACATTGATAAGATGGGGGCTCAGGGTACCCATGATCACCCTGATAATTTATTTCGTTCAGAACATGATAAAGCAAGTGATAAGAAATCAGAGAAGATGTTAGTTCATTTAGGCACGAGCAAATCGAGTGATCCTGATAACATGAGTCAGTGCAGCTCAATTTATCATCATGAGAGAGCACTTAGTTCGCAGTCAGGGGAAGAAGGAAGCTCTGGGACTGGGCGAAAGCAGTCGTCATTATCATATGGAGGACCTATTACAGCCTCTCCTTTGATTGGCCTGCCTGAAGGTTCTCATCTTGGATGGGGCCACTGGTTTACTCTTAGAGATCTGCAATTTGCTACAAATCGTTTTTCTGCAGAAAATGTGCTTGGCGAGGGTGGATATGGGGTTGTTTACAAGGCCAGGCTGATCAATGGAACTGAGGTGGCAGTGAAAAAGCTCTTAAATAACTTGGGGCAGGCAGAGAAAGAATTTAGGGTTGAAGTGGAGGCCATTGGTAATGTTCGGCATAAGAATCTTGTGCGGCTCTTGGGTTACTGCATAGAAGGTGTTCACAGGATGCTGGTGTATGAATATGTGAACAATGGAAACCTAGAACAATGGCTACATGGGGCCATGCGTCATCATGGAACCCTTACTTGGGAGGCTCGCATGAAGGTGATTCTTGGTACTGCTAAAGCGCTTTCTTATCTACATGAAGCTATAGAACCAAAAGTTGTCCACAGAGATATTAAATCCAGCAACATTTTGATTGATGACGAGTTCAATGCCAAGGTTTCTGATTTTGGATTGGCCAAACTCTTGGGTTCTGGAGAAAGTCACATCACGACTAGAGTCATGGGGACTTTTGGTTATGTGGCACCAGAATATGCTAATACTGGCTTGTTAAATGAGAAGAGCGACATCTACAGCTTTGGAGTCCTCCTGCTTGAGGCAGTTACAGGAAGGGATCCTGTAGACTATGGCCGACCTGCTAATGAGGTCAATCTAGTTGAGTGGCTCAAATTGATGGTAGGTGCAAAAAGAGCAGAGGAAGTTGTGGATCCAAACCTTGAAGTTAAACCCAGTACGCGTGCTTTAAAACGCGCCCTTTTAGTTGCACTTCGGTGTGTTGATCATGATTCAGAGAACAGACCAAAAATGGGCCAGGTTGTGCGTATGCTCGAAGCTGATGAACACCCATTTCGTGAGGATCGAAGGAACAGAAAGAGTCGTACAACCAGCATGGATATGGAATCTGCGAAGGAAAGTTCTGCCTCAGCTGACATAGAAAAGAAGGCAGGGGATCTGGAGAGCCAAATATCCAAGACAAGTCATGAATAG

Protein Analysis

512

Amino Acids

56.69

Weight (kDa)

8.13

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 190 - 456 5.5e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 190 - 459 2.8e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1192
Acc65I GGTACC 1 cut(s) 236
AccB1I GGYRCC 2 cut(s) 236, 1072
AccI GTMKAC 1 cut(s) 1170
AccII CGCG 2 cut(s) 1285, 1299
AciI CCGC 2 cut(s) 145, 736
AclWI GGATC 8 cut(s) 103, 335, 1157, 1170, 1250, 1263, 1413, 1506
AcoI YGGCCR 2 cut(s) 1005, 1177
AcsI RAATTY 1 cut(s) 683
AcuI CTGAAG 1 cut(s) 516
AfaI GTAC 4 cut(s) 238, 883, 1282, 1429
AfeI AGCGCT 1 cut(s) 894
AfiI CCNNNNNNNGG 5 cut(s) 485, 852, 853, 1144, 1355
AflIII ACRYGT 1 cut(s) 1283
AgsI TTSAA 5 cut(s) 22, 61, 695, 979, 1268
AjnI CCWGG 2 cut(s) 614, 1359
AjuI GAANNNNNNNTTGG 4 cut(s) 564, 596, 835, 867
AleI CACNNNNGTG 1 cut(s) 1318
AluBI AGCT 7 cut(s) 366, 420, 652, 914, 1125, 1382, 1475
AluI AGCT 7 cut(s) 366, 420, 652, 914, 1125, 1382, 1475
Alw21I GWGCWC 1 cut(s) 391
Alw26I GTCTC 2 cut(s) 156, 202
AlwI GGATC 8 cut(s) 103, 335, 1157, 1170, 1250, 1263, 1413, 1506
Aor51HI AGCGCT 1 cut(s) 894
AoxI GGCC 8 cut(s) 487, 517, 612, 702, 825, 1005, 1177, 1357
ApeKI GCWGC 1 cut(s) 363
ApoI RAATTY 1 cut(s) 683
Asp700I GAANNNNTTC 1 cut(s) 762
Asp718I GGTACC 1 cut(s) 236
AspLEI GCGC 2 cut(s) 895, 1301
AspS9I GGNCC 4 cut(s) 461, 517, 825, 1357
AsuC2I CCSGG 1 cut(s) 10
AsuHPI GGTGA 3 cut(s) 172, 239, 883
AvaII GGWCC 1 cut(s) 461
BalI TGGCCA 1 cut(s) 1007
BamHI GGATCC 2 cut(s) 1162, 1255
BanI GGYRCC 2 cut(s) 236, 1072
BanII GRGCYC 1 cut(s) 232
BauI CACGAG 1 cut(s) 325
Bbv12I GWGCWC 1 cut(s) 391
BbvCI CCTCAGC 1 cut(s) 1471
BbvI GCAGC 1 cut(s) 375
BccI CCATC 3 cut(s) 217, 507, 1216
BcgI CGANNNNNNTGC 4 cut(s) 378, 412, 962, 996
BciT130I CCWGG 2 cut(s) 616, 1361
BclI TGATCA 3 cut(s) 244, 621, 1327
BcnI CCSGG 1 cut(s) 10
BcoDI GTCTC 2 cut(s) 156, 202
BfaI CTAG 3 cut(s) 806, 1044, 1202
BfmI CTRYAG 4 cut(s) 567, 915, 1120, 1167
BfoI RGCGCY 1 cut(s) 896
BfuAI ACCTGC 1 cut(s) 1192
BglII AGATCT 1 cut(s) 538
BisI GCNGC 2 cut(s) 364, 737
BlsI GCNGC 2 cut(s) 365, 738
Bme1390I CCNGG 3 cut(s) 10, 616, 1361
Bme18I GGWCC 1 cut(s) 461
BmgT120I GGNCC 4 cut(s) 461, 517, 825, 1357
BmiI GGNNCC 7 cut(s) 238, 518, 826, 844, 1074, 1164, 1257
BmrFI CCNGG 3 cut(s) 10, 616, 1361
BmrI ACTGGG 3 cut(s) 170, 438, 1272
BmsI GCATC 1 cut(s) 762
BmuI ACTGGG 3 cut(s) 170, 438, 1272
BoxI GACNNNNGTC 1 cut(s) 1046
BpmI CTGGAG 2 cut(s) 1044, 1523
Bpu10I CCTNAGC 2 cut(s) 231, 1471
BpuEI CTTGAG 1 cut(s) 1163
BpuMI CCSGG 1 cut(s) 10
BsaJI CCNNGG 1 cut(s) 984
BsaXI ACNNNNNCTCC 2 cut(s) 460, 490
Bsc4I CCNNNNNNNGG 5 cut(s) 485, 852, 853, 1144, 1355
Bse1I ACTGG 5 cut(s) 176, 433, 527, 1096, 1278
BseBI CCWGG 2 cut(s) 616, 1361
BseDI CCNNGG 1 cut(s) 984
BseGI GGATG 3 cut(s) 5, 518, 777
BseLI CCNNNNNNNGG 5 cut(s) 485, 852, 853, 1144, 1355
BseMII CTCAG 3 cut(s) 245, 624, 1485
BseNI ACTGG 5 cut(s) 176, 433, 527, 1096, 1278
BseXI GCAGC 1 cut(s) 375
BsgI GTGCAG 1 cut(s) 382
Bsh1236I CGCG 2 cut(s) 1285, 1299
BshFI GGCC 8 cut(s) 489, 519, 614, 704, 827, 1007, 1179, 1359
BshNI GGYRCC 2 cut(s) 236, 1072
BsiHKAI GWGCWC 1 cut(s) 391
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 2 cut(s) 439, 1069
BslI CCNNNNNNNGG 5 cut(s) 485, 852, 853, 1144, 1355
BsmAI GTCTC 2 cut(s) 156, 202
BsmFI GGGAC 2 cut(s) 439, 1069
BsnI GGCC 8 cut(s) 489, 519, 614, 704, 827, 1007, 1179, 1359
Bsp1286I GDGCHC 2 cut(s) 232, 391
BspACI CCGC 2 cut(s) 145, 736
BspANI GGCC 8 cut(s) 489, 519, 614, 704, 827, 1007, 1179, 1359
BspCNI CTCAG 3 cut(s) 244, 625, 1484
BspFNI CGCG 2 cut(s) 1285, 1299
BspHI TCATGA 3 cut(s) 379, 1330, 1528
BspLI GGNNCC 7 cut(s) 238, 518, 826, 844, 1074, 1164, 1257
BspMAI CTGCAG 1 cut(s) 571
BspMI ACCTGC 1 cut(s) 1192
BspPI GGATC 8 cut(s) 103, 335, 1157, 1170, 1250, 1263, 1413, 1506
BspQI GCTCTTC 1 cut(s) 1103
BspT107I GGYRCC 2 cut(s) 236, 1072
BsrI ACTGG 5 cut(s) 176, 433, 527, 1096, 1278
BssECI CCNNGG 1 cut(s) 984
BssSI CACGAG 1 cut(s) 325
BssT1I CCWWGG 1 cut(s) 984
Bst2BI CACGAG 1 cut(s) 325
Bst2UI CCWGG 2 cut(s) 616, 1361
Bst6I CTCTTC 1 cut(s) 1103
BstC8I GCNNGC 4 cut(s) 491, 672, 862, 1287
BstDEI CTNAG 5 cut(s) 231, 392, 533, 633, 1471
BstENI CCTNNNNNAGG 1 cut(s) 1142
BstF5I GGATG 3 cut(s) 5, 518, 777
BstFNI CGCG 2 cut(s) 1285, 1299
BstH2I RGCGCY 1 cut(s) 896
BstHHI GCGC 2 cut(s) 895, 1301
BstMAI GTCTC 2 cut(s) 156, 202
BstMWI GCNNNNNNNGC 1 cut(s) 1238
BstNI CCWGG 2 cut(s) 616, 1361
BstPAI GACNNNNGTC 1 cut(s) 1046
BstSCI CCNGG 3 cut(s) 8, 614, 1359
BstSFI CTRYAG 4 cut(s) 567, 915, 1120, 1167
BstUI CGCG 2 cut(s) 1285, 1299
BstV1I GCAGC 1 cut(s) 375
BstX2I RGATCY 4 cut(s) 538, 1162, 1255, 1498
BstXI CCANNNNNNTGG 1 cut(s) 1015
BstYI RGATCY 4 cut(s) 538, 1162, 1255, 1498
BsuRI GGCC 8 cut(s) 489, 519, 614, 704, 827, 1007, 1179, 1359
BtsCI GGATG 3 cut(s) 5, 518, 777
BtsI GCAGTG 1 cut(s) 648
BtsIMutI CAGTG 4 cut(s) 168, 365, 520, 648
BveI ACCTGC 1 cut(s) 1192
Cac8I GCNNGC 4 cut(s) 491, 672, 862, 1287
CciI TCATGA 3 cut(s) 379, 1330, 1528
CfoI GCGC 2 cut(s) 895, 1301
Cfr13I GGNCC 4 cut(s) 461, 517, 825, 1357
CseI GACGC 1 cut(s) 821
Csp6I GTAC 4 cut(s) 237, 882, 1281, 1428
CviQI GTAC 4 cut(s) 237, 882, 1281, 1428
DdeI CTNAG 5 cut(s) 231, 392, 533, 633, 1471
DraI TTTAAA 1 cut(s) 1293
EaeI YGGCCR 2 cut(s) 1005, 1177
Eam1104I CTCTTC 1 cut(s) 1103
EarI CTCTTC 1 cut(s) 1103
EciI GGCGGA 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 984
Eco24I GRGCYC 1 cut(s) 232
Eco32I GATATC 1 cut(s) 208
Eco47I GGWCC 1 cut(s) 461
Eco47III AGCGCT 1 cut(s) 894
Eco57I CTGAAG 1 cut(s) 516
EcoNI CCTNNNNNAGG 1 cut(s) 1142
EcoO109I RGGNCCY 1 cut(s) 461
EcoRII CCWGG 2 cut(s) 614, 1359
EcoRV GATATC 1 cut(s) 208
EcoT14I CCWWGG 1 cut(s) 984
EcoT38I GRGCYC 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 984
FaqI GGGAC 2 cut(s) 439, 1069
FauNDI CATATG 1 cut(s) 454
FbaI TGATCA 3 cut(s) 244, 621, 1327
FblI GTMKAC 1 cut(s) 1170
Fnu4HI GCNGC 2 cut(s) 364, 737
FokI GGATG 2 cut(s) 525, 784
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 2 cut(s) 364, 737
FspBI CTAG 3 cut(s) 806, 1044, 1202
GlaI GCGC 2 cut(s) 894, 1300
GluI GCNGC 2 cut(s) 364, 737
GsuI CTGGAG 2 cut(s) 1044, 1523
HaeII RGCGCY 1 cut(s) 896
HaeIII GGCC 8 cut(s) 489, 519, 614, 704, 827, 1007, 1179, 1359
HapII CCGG 1 cut(s) 9
HgaI GACGC 1 cut(s) 821
HhaI GCGC 2 cut(s) 895, 1301
Hin6I GCGC 2 cut(s) 893, 1299
HinP1I GCGC 2 cut(s) 893, 1299
HinfI GANTC 8 cut(s) 355, 727, 874, 1047, 1131, 1334, 1423, 1448
HpaII CCGG 1 cut(s) 9
HphI GGTGA 3 cut(s) 172, 239, 883
Hpy166II GTNNAC 7 cut(s) 166, 528, 607, 766, 793, 934, 1171
Hpy188I TCNGA 4 cut(s) 271, 301, 994, 1339
Hpy188III TCNNGA 9 cut(s) 153, 344, 380, 1023, 1039, 1331, 1400, 1502, 1529
Hpy8I GTNNAC 7 cut(s) 166, 528, 607, 766, 793, 934, 1171
Hpy99I CGWCG 1 cut(s) 159
HpyAV CCTTC 8 cut(s) 407, 491, 752, 862, 1152, 1404, 1450, 1483
HpyCH4V TGCA 7 cut(s) 95, 363, 544, 569, 753, 1232, 1313
HpyF10VI GCNNNNNNNGC 1 cut(s) 1238
HpyF3I CTNAG 5 cut(s) 231, 392, 533, 633, 1471
HspAI GCGC 2 cut(s) 893, 1299
KpnI GGTACC 1 cut(s) 240
Ksp22I TGATCA 3 cut(s) 244, 621, 1327
LguI GCTCTTC 1 cut(s) 1103
Lsp1109I GCAGC 1 cut(s) 375
LweI GCATC 1 cut(s) 762
MaeI CTAG 3 cut(s) 806, 1044, 1202
MaeIII GTNAC 4 cut(s) 178, 746, 1031, 1150
MboII GAAGA 5 cut(s) 49, 52, 316, 422, 1120
MflI RGATCY 4 cut(s) 538, 1162, 1255, 1498
MhlI GDGCHC 2 cut(s) 232, 391
MlsI TGGCCA 1 cut(s) 1007
MluCI AATT 6 cut(s) 29, 256, 369, 545, 683, 1217
MluI ACGCGT 1 cut(s) 1283
MluNI TGGCCA 1 cut(s) 1007
MlyI GAGTC 4 cut(s) 364, 1056, 1140, 1432
Mox20I TGGCCA 1 cut(s) 1007
MroXI GAANNNNTTC 1 cut(s) 762
MscI TGGCCA 1 cut(s) 1007
MseI TTAA 5 cut(s) 656, 945, 1100, 1272, 1292
MslI CAYNNNNRTG 3 cut(s) 869, 1318, 1442
Msp20I TGGCCA 1 cut(s) 1007
MspA1I CMGCKG 1 cut(s) 1475
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 3 cut(s) 10, 616, 1361
MvaI CCWGG 2 cut(s) 616, 1361
MvnI CGCG 2 cut(s) 1285, 1299
MwoI GCNNNNNNNGC 1 cut(s) 1238
NciI CCSGG 1 cut(s) 10
NdeI CATATG 1 cut(s) 454
NlaIV GGNNCC 7 cut(s) 238, 518, 826, 844, 1074, 1164, 1257
NmuCI GTSAC 2 cut(s) 178, 1031
OliI CACNNNNGTG 1 cut(s) 1318
PagI TCATGA 3 cut(s) 379, 1330, 1528
PciSI GCTCTTC 1 cut(s) 1103
PcsI WCGNNNNNNNCGW 2 cut(s) 332, 1405
PdmI GAANNNNTTC 1 cut(s) 762
PfeI GAWTC 4 cut(s) 727, 874, 1334, 1448
PfoI TCCNGGA 1 cut(s) 8
PkrI GCNGC 2 cut(s) 365, 738
PleI GAGTC 4 cut(s) 363, 1055, 1139, 1431
PpsI GAGTC 4 cut(s) 363, 1055, 1139, 1431
PpuMI RGGWCCY 1 cut(s) 461
PshAI GACNNNNGTC 1 cut(s) 1046
Psp5II RGGWCCY 1 cut(s) 461
Psp6I CCWGG 2 cut(s) 614, 1359
PspGI CCWGG 2 cut(s) 614, 1359
PspN4I GGNNCC 7 cut(s) 238, 518, 826, 844, 1074, 1164, 1257
PspPI GGNCC 4 cut(s) 461, 517, 825, 1357
PspPPI RGGWCCY 1 cut(s) 461
PsrI GAACNNNNNNTAC 2 cut(s) 801, 833
PstI CTGCAG 1 cut(s) 571
PsuI RGATCY 4 cut(s) 538, 1162, 1255, 1498
PvuII CAGCTG 1 cut(s) 1475
RsaI GTAC 4 cut(s) 238, 883, 1282, 1429
RsaNI GTAC 4 cut(s) 237, 882, 1281, 1428
RseI CAYNNNNRTG 3 cut(s) 869, 1318, 1442
SapI GCTCTTC 1 cut(s) 1103
SaqAI TTAA 5 cut(s) 656, 945, 1100, 1272, 1292
SatI GCNGC 2 cut(s) 364, 737
Sau96I GGNCC 4 cut(s) 461, 517, 825, 1357
SchI GAGTC 4 cut(s) 364, 1056, 1140, 1432
ScrFI CCNGG 3 cut(s) 10, 616, 1361
SduI GDGCHC 2 cut(s) 232, 391
SfaNI GCATC 1 cut(s) 762
SfcI CTRYAG 4 cut(s) 567, 915, 1120, 1167
SinI GGWCC 1 cut(s) 461
SmiMI CAYNNNNRTG 3 cut(s) 869, 1318, 1442
SmlI CTYRAG 1 cut(s) 1142
SmoI CTYRAG 1 cut(s) 1142
Sse9I AATT 6 cut(s) 29, 256, 369, 545, 683, 1217
SsiI CCGC 2 cut(s) 145, 736
SspMI CTAG 3 cut(s) 806, 1044, 1202
StyD4I CCNGG 3 cut(s) 8, 614, 1359
StyI CCWWGG 1 cut(s) 984
TaqI TCGA 6 cut(s) 35, 107, 154, 335, 1377, 1408
TasI AATT 6 cut(s) 29, 256, 369, 545, 683, 1217
TauI GCSGC 1 cut(s) 739
TfiI GAWTC 4 cut(s) 727, 874, 1334, 1448
Tru1I TTAA 5 cut(s) 656, 945, 1100, 1272, 1292
Tru9I TTAA 5 cut(s) 656, 945, 1100, 1272, 1292
TscAI CASTG 4 cut(s) 168, 365, 527, 648
TseFI GTSAC 2 cut(s) 178, 1031
TseI GCWGC 1 cut(s) 363
Tsp45I GTSAC 2 cut(s) 178, 1031
TspDTI ATGAA 6 cut(s) 126, 305, 798, 881, 924, 1401
TspRI CASTG 4 cut(s) 168, 365, 527, 648
VpaK11BI GGWCC 1 cut(s) 461
XagI CCTNNNNNAGG 1 cut(s) 1142
XapI RAATTY 1 cut(s) 683
XcmI CCANNNNNNNNNTGG 1 cut(s) 1441
XmiI GTMKAC 1 cut(s) 1170
XmnI GAANNNNTTC 1 cut(s) 762
XspI CTAG 3 cut(s) 806, 1044, 1202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.