Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008223

Physical Location & Seq

Genomic Coordinates Reverse (-)

54888429 .. 54890232

Gene Structure 1804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0428100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAGCGTCAGTACTCGGGCGGAGGAGGAGGAGGAGGAGGAGGAAGTGGGAGCTGGAATATGATCCCCAGCGTGCCGACCCACAGTAACCCTTCTACGCCGTCCAGTCAGGACCATCTCTACCTCCAACAACACCAACAGCAATTCCAGCACCAGCAACAACAACAGCGTCTTCTTCTCCAACAACAACAACAACAGCAGCAGCAGCAACAACAACAACAACAGCAACAGCAACAACAACAACATCAGTCTCTCGCCTCCCACTTCCATCTCTTCCACTTGGTGGAGAAGTTATCGGATTCGATTGAGAACGGGACGAGGGATCAGCAATCGGATGCATTGGTCGCTGATTTGAACACCCATTTCGACAAGTGCCAGCAGCTGTTGAACTCCATATCCGGATCCATCCCCACCAAGGCTATGACGGTTGAGGGACAGAAGAAGAAGCTCGAAGAGAGTGAGCAATTGTTAAATCAGCGGAGGGACCTGAATAACAAGTACAAAAACTCTGTTGTTGACCTCCTCAAGTCTGAGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

179

Amino Acids

20.38

Weight (kDa)

6.49

Isoelectric Point (pI)

71.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G42960 AT2G42960 AT2G42960 AT2G42960 AT2G42960 AT3G59110
fragaria_vesca	FvH4_6g38380 FvH4_6g38380
malus_domestica	MD09G1150400.v1.1 MD17G1138000.v1.1
prunus_persica	Prupe.3G174500_v2.0.a1
pyrus_communis	pycom09g07030 pycom17g13120
rosa_chinensis	RchiOBHm_Chr2g0151691
rosa_laevigata	RLG00000020569
rosa_multiflora	Rmu_sc0005294.1_g000046
rosa_roxburghii	Rroxscaffold_2G00096250
rosa_rugosa	Rorug02G0428100
rosa_samantha	Rh2AG488900 Rh2BG501600 Rh2CG475500 Rh2DG512700
rosa_wichuraiana	Rw2G040090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	283
AccIII	TCCGGA	1 cut(s)	398
AciI	CCGC	2 cut(s)	21, 478
AclWI	GGATC	4 cut(s)	58, 330, 396, 409
AdeI	CACNNNGTG	1 cut(s)	283
AfaI	GTAC	2 cut(s)	14, 500
AfiI	CCNNNNNNNGG	2 cut(s)	283, 415
AgsI	TTSAA	2 cut(s)	355, 388
AloI	GAACNNNNNNTCC	2 cut(s)	380, 412
AluBI	AGCT	3 cut(s)	54, 382, 448
AluI	AGCT	3 cut(s)	54, 382, 448
Alw26I	GTCTC	1 cut(s)	255
AlwI	GGATC	4 cut(s)	58, 330, 396, 409
AlwNI	CAGNNNCTG	1 cut(s)	382
Ama87I	CYCGRG	1 cut(s)	16
Aor13HI	TCCGGA	1 cut(s)	398
ApeKI	GCWGC	4 cut(s)	199, 202, 205, 379
AspS9I	GGNCC	2 cut(s)	112, 484
AvaI	CYCGRG	1 cut(s)	16
AvaII	GGWCC	2 cut(s)	112, 484
BamHI	GGATCC	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	164
BbvI	GCAGC	4 cut(s)	211, 214, 217, 391
BccI	CCATC	3 cut(s)	123, 276, 413
BceAI	ACGGC	2 cut(s)	85, 520
BcoDI	GTCTC	1 cut(s)	255
BisI	GCNGC	4 cut(s)	200, 203, 206, 380
BlsI	GCNGC	4 cut(s)	201, 204, 207, 381
BmcAI	AGTACT	1 cut(s)	14
Bme18I	GGWCC	2 cut(s)	112, 484
BmeT110I	CYCGRG	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	112, 484
BmiI	GGNNCC	2 cut(s)	403, 485
BmsI	GCATC	1 cut(s)	325
BpiI	GAAGAC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	509
BsaJI	CCNNGG	1 cut(s)	414
BsaWI	WCCGGW	1 cut(s)	398
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	283, 415
Bse1I	ACTGG	1 cut(s)	105
BseAI	TCCGGA	1 cut(s)	398
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	2 cut(s)	340, 405
BseLI	CCNNNNNNNGG	2 cut(s)	283, 415
BseMII	CTCAG	1 cut(s)	522
BseNI	ACTGG	1 cut(s)	105
BseRI	GAGGAG	7 cut(s)	39, 42, 45, 48, 51, 54, 512
BseXI	GCAGC	4 cut(s)	211, 214, 217, 391
BseYI	CCCAGC	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	16
BsiSI	CCGG	1 cut(s)	399
BslFI	GGGAC	3 cut(s)	328, 447, 497
BslI	CCNNNNNNNGG	2 cut(s)	283, 415
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	3 cut(s)	328, 447, 497
BsoBI	CYCGRG	1 cut(s)	16
Bsp13I	TCCGGA	1 cut(s)	398
Bsp143I	GATC	3 cut(s)	63, 322, 401
BspACI	CCGC	2 cut(s)	21, 478
BspCNI	CTCAG	1 cut(s)	523
BspEI	TCCGGA	1 cut(s)	398
BspLI	GGNNCC	2 cut(s)	403, 485
BspPI	GGATC	4 cut(s)	58, 330, 396, 409
BsrI	ACTGG	1 cut(s)	105
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	3 cut(s)	63, 322, 401
BssT1I	CCWWGG	1 cut(s)	414
Bst4CI	ACNGT	2 cut(s)	86, 427
Bst6I	CTCTTC	2 cut(s)	278, 447
BstC8I	GCNNGC	2 cut(s)	74, 377
BstDEI	CTNAG	1 cut(s)	531
BstF5I	GGATG	2 cut(s)	340, 405
BstKTI	GATC	3 cut(s)	66, 325, 404
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	3 cut(s)	63, 322, 401
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 205, 344
BstV1I	GCAGC	4 cut(s)	211, 214, 217, 391
BstV2I	GAAGAC	1 cut(s)	164
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
BtsCI	GGATG	2 cut(s)	340, 405
Cac8I	GCNNGC	2 cut(s)	74, 377
CaiI	CAGNNNCTG	1 cut(s)	382
Cfr13I	GGNCC	2 cut(s)	112, 484
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	2 cut(s)	13, 499
CviJI	RGCY	5 cut(s)	54, 382, 419, 448, 535
CviKI_1	RGCY	5 cut(s)	54, 382, 419, 448, 535
CviQI	GTAC	2 cut(s)	13, 499
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	3 cut(s)	65, 324, 403
DpnII	GATC	3 cut(s)	63, 322, 401
DraIII	CACNNNGTG	1 cut(s)	283
Eam1104I	CTCTTC	2 cut(s)	278, 447
EarI	CTCTTC	2 cut(s)	278, 447
EciI	GGCGGA	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	414
Eco47I	GGWCC	2 cut(s)	112, 484
Eco88I	CYCGRG	1 cut(s)	16
EcoO109I	RGGNCCY	1 cut(s)	484
EcoT14I	CCWWGG	1 cut(s)	414
EcoT22I	ATGCAT	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	414
FaiI	YATR	3 cut(s)	62, 395, 422
FaqI	GGGAC	3 cut(s)	328, 447, 497
Fnu4HI	GCNGC	4 cut(s)	200, 203, 206, 380
FokI	GGATG	2 cut(s)	347, 392
Fsp4HI	GCNGC	4 cut(s)	200, 203, 206, 380
GluI	GCNGC	4 cut(s)	200, 203, 206, 380
GsaI	CCCAGC	1 cut(s)	72
HapII	CCGG	1 cut(s)	399
HgaI	GACGC	1 cut(s)	158
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	1 cut(s)	399
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	3 cut(s)	298, 334, 532
Hpy188III	TCNNGA	2 cut(s)	110, 399
Hpy8I	GTNNAC	1 cut(s)	517
HpyAV	CCTTC	1 cut(s)	102
HpyCH4III	ACNGT	2 cut(s)	86, 427
HpyCH4V	TGCA	1 cut(s)	338
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 205, 344
HpyF3I	CTNAG	1 cut(s)	531
Kpn2I	TCCGGA	1 cut(s)	398
Kzo9I	GATC	3 cut(s)	63, 322, 401
LmnI	GCTCC	2 cut(s)	4, 51
LpnPI	CCDG	9 cut(s)	40, 82, 95, 118, 161, 167, 389, 412, 500
Lsp1109I	GCAGC	4 cut(s)	211, 214, 217, 391
LweI	GCATC	1 cut(s)	325
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	3 cut(s)	65, 324, 403
MboI	GATC	3 cut(s)	63, 322, 401
MboII	GAAGA	6 cut(s)	164, 167, 265, 451, 454, 464
MfeI	CAATTG	1 cut(s)	464
MflI	RGATCY	1 cut(s)	401
MluCI	AATT	2 cut(s)	143, 464
MmeI	TCCRAC	2 cut(s)	151, 205
Mph1103I	ATGCAT	1 cut(s)	340
MroI	TCCGGA	1 cut(s)	398
MseI	TTAA	1 cut(s)	470
MspA1I	CMGCKG	2 cut(s)	382, 478
MspI	CCGG	1 cut(s)	399
MunI	CAATTG	1 cut(s)	464
MwoI	GCNNNNNNNGC	3 cut(s)	148, 205, 344
NdeII	GATC	3 cut(s)	63, 322, 401
NlaIV	GGNNCC	2 cut(s)	403, 485
NsiI	ATGCAT	1 cut(s)	340
PfeI	GAWTC	1 cut(s)	299
PflMI	CCANNNNNTGG	1 cut(s)	283
PkrI	GCNGC	4 cut(s)	201, 204, 207, 381
PpuMI	RGGWCCY	1 cut(s)	484
Psp5II	RGGWCCY	1 cut(s)	484
PspFI	CCCAGC	1 cut(s)	68
PspN4I	GGNNCC	2 cut(s)	403, 485
PspPI	GGNCC	2 cut(s)	112, 484
PspPPI	RGGWCCY	1 cut(s)	484
PstNI	CAGNNNCTG	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	401
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	2 cut(s)	14, 500
RsaNI	GTAC	2 cut(s)	13, 499
SaqAI	TTAA	1 cut(s)	470
SatI	GCNGC	4 cut(s)	200, 203, 206, 380
Sau3AI	GATC	3 cut(s)	63, 322, 401
Sau96I	GGNCC	2 cut(s)	112, 484
ScaI	AGTACT	1 cut(s)	14
SetI	ASST	6 cut(s)	56, 126, 384, 450, 489, 522
SfaNI	GCATC	1 cut(s)	325
SinI	GGWCC	2 cut(s)	112, 484
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
Sse9I	AATT	2 cut(s)	143, 464
SsiI	CCGC	2 cut(s)	21, 478
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	2 cut(s)	86, 427
TaqI	TCGA	3 cut(s)	302, 366, 450
TasI	AATT	2 cut(s)	143, 464
TatI	WGTACW	2 cut(s)	12, 498
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	470
Tru9I	TTAA	1 cut(s)	470
TseI	GCWGC	4 cut(s)	199, 202, 205, 379
Van91I	CCANNNNNTGG	1 cut(s)	283
VpaK11BI	GGWCC	2 cut(s)	112, 484
ZrmI	AGTACT	1 cut(s)	14
Zsp2I	ATGCAT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.