Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012022

Physical Location & Seq

Genomic Coordinates Forward (+)

17918926 .. 17920496

Gene Structure 1571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G43090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCGGCTTCTCTGCAATCAGCAAACCCTACATTGTCACGAACCCTAGCTTCTCCGAACAAACCTTCCTCCTTCGCCACCTTCCGATCTCCATTTCTCAGATTCAATTCAACATCCGTCGCTTCCAATTTCAAACCCCTAGTTTCTCGAGAAGCATCCTCATCGTTCGTCACTCGCTCCGCCGCCGAGCCACAAGAAAGAAAAACCTTCCATGGACTGTGCTATGTCGTCGGCGACAACATCGACACTGACCAAATCATTCCCGCGGAGTTTCTCACTCTCGTCCCTTCGAATCCAGAGGAATACGAGAAACTCGGTTCTTACGCTTTAGTTGGTCTTCCAGCTTCTTACAAGGAACGATTCGTTCAGCCAGGTGAGATGAAGACGAAGTACTCAATCATCATTGGCGGTGAAAACTTTGGATGTGGATCGTCACGTGAACATGCTCCGGTTTGTTTAGGAGCAGCGGGAGCTAAAGCAGTGGTGGCTCAGTCTTATGCTAGAATCTTTTTCAGGAACTCTGTTGCTACTGGTGAGGTTTATCCTTTGGATTCTGAAGTTAGGGTTTGTGATGAGTGTACAACTGGTGATGTTGCGACTGTTGAGTTGAGGGAAGGAGATAGTATTTTGATCAATCATACGACTGGGAAAGAGTACAAGCTTAAGCCGATTGGTGATGCTGGACCAGTGATTGATGCTGGTGGTATATTTGCTTATGCTAGGAAAGCTGGAATGATTCCATCTGCTGCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003861 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0016829 GO:0016835 GO:0016836 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0048229 GO:0048856 GO:0050896 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase_C

Protein Analysis

251

Amino Acids

26.79

Weight (kDa)

6.33

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43090 AT2G43090
fragaria_vesca	FvH4_5g19250 FvH4_5g19250
malus_domestica	MD04G1062100.v1.1 MD06G1055800.v1.1
prunus_persica	Prupe.5G066300_v2.0.a1
pyrus_communis	pycom04g05570 pycom06g04670
rosa_laevigata	RLG00000003506
rosa_multiflora	Rmu_sc0000876.1_g000034 Rmu_sc0001714.1_g000009
rosa_roxburghii	Rroxscaffold_3G00253550
rosa_rugosa	Rorug07G0078900
rosa_samantha	Rh7AG208600 Rh7BG207400 Rh7CG220600 Rh7DG215400
rosa_wichuraiana	Rw7G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	266
AciI	CCGC	7 cut(s)	5, 180, 183, 264, 266, 408, 467
AclWI	GGATC	1 cut(s)	436
AcuI	CTGAAG	1 cut(s)	576
AcvI	CACGTG	1 cut(s)	437
AfaI	GTAC	3 cut(s)	392, 580, 656
AflII	CTTAAG	1 cut(s)	662
AgsI	TTSAA	3 cut(s)	106, 111, 133
AjnI	CCWGG	1 cut(s)	370
AloI	GAACNNNNNNTCC	2 cut(s)	50, 82
AluBI	AGCT	5 cut(s)	50, 344, 473, 661, 728
AluI	AGCT	5 cut(s)	50, 344, 473, 661, 728
AlwI	GGATC	1 cut(s)	436
Ama87I	CYCGRG	1 cut(s)	147
ApeKI	GCWGC	3 cut(s)	464, 746, 749
AspS9I	GGNCC	1 cut(s)	683
AsuHPI	GGTGA	5 cut(s)	386, 422, 545, 599, 686
AsuII	TTCGAA	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	147
AvaII	GGWCC	1 cut(s)	683
BarI	GAAGNNNNNNTAC	2 cut(s)	374, 406
BbrPI	CACGTG	1 cut(s)	437
BbsI	GAAGAC	2 cut(s)	329, 389
BbvI	GCAGC	3 cut(s)	476, 733, 736
BccI	CCATC	1 cut(s)	748
BcgI	CGANNNNNNTGC	2 cut(s)	144, 178
BciT130I	CCWGG	1 cut(s)	372
BclI	TGATCA	1 cut(s)	630
BfaI	CTAG	4 cut(s)	47, 140, 501, 720
BfrI	CTTAAG	1 cut(s)	662
BisI	GCNGC	5 cut(s)	6, 183, 465, 747, 750
BlsI	GCNGC	5 cut(s)	7, 184, 466, 748, 751
BmcAI	AGTACT	1 cut(s)	392
Bme1390I	CCNGG	1 cut(s)	372
Bme18I	GGWCC	1 cut(s)	683
BmeT110I	CYCGRG	1 cut(s)	147
BmgT120I	GGNCC	1 cut(s)	683
BmrFI	CCNGG	1 cut(s)	372
BmrI	ACTGGG	1 cut(s)	654
BmsI	GCATC	3 cut(s)	164, 667, 685
BmuI	ACTGGG	1 cut(s)	654
BpiI	GAAGAC	2 cut(s)	329, 389
Bpu14I	TTCGAA	1 cut(s)	290
BsaAI	YACGTR	1 cut(s)	437
BsaBI	GATNNNNATC	1 cut(s)	427
BsaJI	CCNNGG	2 cut(s)	211, 264
BsaWI	WCCGGW	1 cut(s)	448
Bse1I	ACTGG	4 cut(s)	535, 589, 649, 686
Bse8I	GATNNNNATC	1 cut(s)	427
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	2 cut(s)	211, 264
BseGI	GGATG	3 cut(s)	113, 155, 428
BseJI	GATNNNNATC	1 cut(s)	427
BseMII	CTCAG	2 cut(s)	112, 503
BseNI	ACTGG	4 cut(s)	535, 589, 649, 686
BseXI	GCAGC	3 cut(s)	476, 733, 736
Bsh1236I	CGCG	1 cut(s)	266
BsiHKCI	CYCGRG	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	449
BslFI	GGGAC	1 cut(s)	269
BsmFI	GGGAC	1 cut(s)	269
BsoBI	CYCGRG	1 cut(s)	147
Bsp119I	TTCGAA	1 cut(s)	290
Bsp1407I	TGTACA	1 cut(s)	578
Bsp143I	GATC	3 cut(s)	86, 428, 630
Bsp19I	CCATGG	1 cut(s)	211
BspACI	CCGC	7 cut(s)	5, 180, 183, 264, 266, 408, 467
BspCNI	CTCAG	2 cut(s)	111, 502
BspFNI	CGCG	1 cut(s)	266
BspPI	GGATC	1 cut(s)	436
BspT104I	TTCGAA	1 cut(s)	290
BspTI	CTTAAG	1 cut(s)	662
BsrGI	TGTACA	1 cut(s)	578
BsrI	ACTGG	4 cut(s)	535, 589, 649, 686
BssECI	CCNNGG	2 cut(s)	211, 264
BssMI	GATC	3 cut(s)	86, 428, 630
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	219, 601
BstAFI	CTTAAG	1 cut(s)	662
BstAUI	TGTACA	1 cut(s)	578
BstBAI	YACGTR	1 cut(s)	437
BstBI	TTCGAA	1 cut(s)	290
BstDEI	CTNAG	2 cut(s)	98, 489
BstDSI	CCRYGG	2 cut(s)	211, 264
BstF5I	GGATG	3 cut(s)	113, 155, 428
BstFNI	CGCG	1 cut(s)	266
BstKTI	GATC	3 cut(s)	89, 431, 633
BstMBI	GATC	3 cut(s)	86, 428, 630
BstMWI	GCNNNNNNNGC	3 cut(s)	470, 485, 725
BstNI	CCWGG	1 cut(s)	372
BstNSI	RCATGY	1 cut(s)	446
BstSCI	CCNGG	1 cut(s)	370
BstUI	CGCG	1 cut(s)	266
BstV1I	GCAGC	3 cut(s)	476, 733, 736
BstV2I	GAAGAC	2 cut(s)	329, 389
BtgI	CCRYGG	2 cut(s)	211, 264
BtsCI	GGATG	3 cut(s)	113, 155, 428
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	3 cut(s)	246, 486, 693
Cfr13I	GGNCC	1 cut(s)	683
Cfr42I	CCGCGG	1 cut(s)	267
Csp6I	GTAC	3 cut(s)	391, 579, 655
CviAII	CATG	2 cut(s)	212, 443
CviQI	GTAC	3 cut(s)	391, 579, 655
DdeI	CTNAG	2 cut(s)	98, 489
DpnI	GATC	3 cut(s)	88, 430, 632
DpnII	GATC	3 cut(s)	86, 428, 630
EciI	GGCGGA	1 cut(s)	169
Eco130I	CCWWGG	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	683
Eco57I	CTGAAG	1 cut(s)	576
Eco72I	CACGTG	1 cut(s)	437
Eco88I	CYCGRG	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	211
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	2 cut(s)	215, 446
FaiI	YATR	7 cut(s)	213, 225, 444, 498, 639, 707, 717
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	2 cut(s)	211, 442
FauI	CCCGC	2 cut(s)	271, 460
FbaI	TGATCA	1 cut(s)	630
Fnu4HI	GCNGC	5 cut(s)	6, 183, 465, 747, 750
FokI	GGATG	3 cut(s)	100, 142, 435
Fsp4HI	GCNGC	5 cut(s)	6, 183, 465, 747, 750
FspBI	CTAG	4 cut(s)	47, 140, 501, 720
GluI	GCNGC	5 cut(s)	6, 183, 465, 747, 750
HapII	CCGG	1 cut(s)	449
Hin1II	CATG	2 cut(s)	215, 446
HindIII	AAGCTT	1 cut(s)	659
HinfI	GANTC	6 cut(s)	102, 292, 360, 504, 551, 736
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	5 cut(s)	386, 422, 545, 599, 686
Hpy166II	GTNNAC	2 cut(s)	440, 579
Hpy188I	TCNGA	4 cut(s)	57, 86, 101, 556
Hpy188III	TCNNGA	5 cut(s)	39, 147, 149, 296, 514
Hpy8I	GTNNAC	2 cut(s)	440, 579
Hpy99I	CGWCG	2 cut(s)	122, 233
HpyAV	CCTTC	6 cut(s)	75, 82, 91, 217, 297, 608
HpyCH4III	ACNGT	2 cut(s)	219, 601
HpyCH4IV	ACGT	1 cut(s)	436
HpyCH4V	TGCA	1 cut(s)	16
HpyF10VI	GCNNNNNNNGC	3 cut(s)	470, 485, 725
HpyF3I	CTNAG	2 cut(s)	98, 489
HpySE526I	ACGT	1 cut(s)	436
Hsp92II	CATG	2 cut(s)	215, 446
Ksp22I	TGATCA	1 cut(s)	630
KspI	CCGCGG	1 cut(s)	267
Kzo9I	GATC	3 cut(s)	86, 428, 630
LmnI	GCTCC	4 cut(s)	182, 451, 461, 470
Lsp1109I	GCAGC	3 cut(s)	476, 733, 736
LweI	GCATC	3 cut(s)	164, 667, 685
MaeI	CTAG	4 cut(s)	47, 140, 501, 720
MaeII	ACGT	1 cut(s)	436
MaeIII	GTNAC	3 cut(s)	36, 169, 432
MalI	GATC	3 cut(s)	88, 430, 632
MboI	GATC	3 cut(s)	86, 428, 630
MboII	GAAGA	2 cut(s)	329, 394
MluCI	AATT	2 cut(s)	106, 127
MnlI	CCTC	5 cut(s)	79, 169, 292, 529, 603
MseI	TTAA	1 cut(s)	663
MspA1I	CMGCKG	2 cut(s)	266, 467
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
MvnI	CGCG	1 cut(s)	266
MwoI	GCNNNNNNNGC	3 cut(s)	470, 485, 725
NcoI	CCATGG	1 cut(s)	211
NdeII	GATC	3 cut(s)	86, 428, 630
NlaIII	CATG	2 cut(s)	215, 446
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	3 cut(s)	36, 169, 432
NspI	RCATGY	1 cut(s)	446
NspV	TTCGAA	1 cut(s)	290
PaeR7I	CTCGAG	1 cut(s)	147
PfeI	GAWTC	6 cut(s)	102, 292, 360, 504, 551, 736
PkrI	GCNGC	5 cut(s)	7, 184, 466, 748, 751
PmaCI	CACGTG	1 cut(s)	437
PmlI	CACGTG	1 cut(s)	437
Ppu21I	YACGTR	1 cut(s)	437
Psp6I	CCWGG	1 cut(s)	370
PspCI	CACGTG	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	683
RsaI	GTAC	3 cut(s)	392, 580, 656
RsaNI	GTAC	3 cut(s)	391, 579, 655
SacII	CCGCGG	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	663
SatI	GCNGC	5 cut(s)	6, 183, 465, 747, 750
Sau3AI	GATC	3 cut(s)	86, 428, 630
Sau96I	GGNCC	1 cut(s)	683
ScaI	AGTACT	1 cut(s)	392
ScrFI	CCNGG	1 cut(s)	372
SfaNI	GCATC	3 cut(s)	164, 667, 685
Sfr274I	CTCGAG	1 cut(s)	147
Sfr303I	CCGCGG	1 cut(s)	267
SfuI	TTCGAA	1 cut(s)	290
SgrBI	CCGCGG	1 cut(s)	267
SinI	GGWCC	1 cut(s)	683
SlaI	CTCGAG	1 cut(s)	147
SmlI	CTYRAG	2 cut(s)	147, 662
SmoI	CTYRAG	2 cut(s)	147, 662
Sse9I	AATT	2 cut(s)	106, 127
SsiI	CCGC	7 cut(s)	5, 180, 183, 264, 266, 408, 467
SspMI	CTAG	4 cut(s)	47, 140, 501, 720
StyD4I	CCNGG	1 cut(s)	370
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	2 cut(s)	219, 601
TaiI	ACGT	1 cut(s)	439
TaqI	TCGA	3 cut(s)	148, 243, 290
TasI	AATT	2 cut(s)	106, 127
TatI	WGTACW	3 cut(s)	390, 578, 654
TauI	GCSGC	2 cut(s)	8, 185
TfiI	GAWTC	6 cut(s)	102, 292, 360, 504, 551, 736
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TscAI	CASTG	3 cut(s)	253, 486, 693
TseFI	GTSAC	3 cut(s)	36, 169, 432
TseI	GCWGC	3 cut(s)	464, 746, 749
Tsp45I	GTSAC	3 cut(s)	36, 169, 432
TspDTI	ATGAA	1 cut(s)	395
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	3 cut(s)	253, 486, 693
Vha464I	CTTAAG	1 cut(s)	662
VpaK11BI	GGWCC	1 cut(s)	683
XceI	RCATGY	1 cut(s)	446
XhoI	CTCGAG	1 cut(s)	147
XspI	CTAG	4 cut(s)	47, 140, 501, 720
ZrmI	AGTACT	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.