Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0012022

Physical Location & Seq

Genomic Coordinates Forward (+)

20202812 .. 20204441

Gene Structure 1630 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG220600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCCGCCGCCTCCCTCTCCATCTCTCCAAACCCTAGCTTCACCACCACCACCTCTCACAAACCCTCTCCCTCTCTCTCAACCCCAACCCACCTCAAATTCTCAACCACCACCTCCTCTCCCATCCCCGCCAAATCCCTATCCACCCTTCACCTCTCCCAAACCCCAATCCCAAGCGCCACCTTCTCCACACGCGCCTCCGCCGCCGCCTCAACCACTCCCTCCACCACCTTCCACGGCCTCTGCTACGTCGTCGGCGACAACATCGACACCGACCAGATTATCCCCGCCGAATACCTCACCCTCGTCCCCTCCAACCCCTCCGAGTACGAGAAGCTCGGCTCCTACGCCCTCTGCGGCCTCCCGGCGTCCTACTCCACGCGCTTCGTCGACCCCAACGAAACCAAGTCCAAGTACTCCATCGTCATCGGCGGCGCCAACTTCGGCTGCGGCTCGTCCCGCGAGCACGCGCCGGTGGCTCTCGGCGCGGCGGGAGTGGCGGCGGTGGTGGCCGAGTCGTACGCGCGCATCTTCTTCAGGAACTCGGTGGCCACCGGCGAGGTTTACCCGCTGGAATCGGAGACGAGGATTTGCGAGGAGTGCAGGACCGGTGATGTGGTGAGCATTGAGCTGAGCGAGAGCCGTCTGATCAATCACACGACTGGGAAAGAGTATGTGTTGAAGCCCATCGGGGATGCAGGTCCGGTTATCAGAGCTGGTGGCATATTTGCTTATGCCAGAGAGGCTGGGATGATTCCAACTTTGTCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003861 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0016829 GO:0016835 GO:0016836 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0048229 GO:0048856 GO:0050896 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase_C

Protein Analysis

257

Amino Acids

26.9

Weight (kDa)

6.07

Isoelectric Point (pI)

39.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase_C	PF00694	138 - 186	1.4e-17	Aconitase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43090 AT2G43090
fragaria_vesca	FvH4_5g19250 FvH4_5g19250
malus_domestica	MD04G1062100.v1.1 MD06G1055800.v1.1
prunus_persica	Prupe.5G066300_v2.0.a1
pyrus_communis	pycom04g05570 pycom06g04670
rosa_laevigata	RLG00000003506
rosa_multiflora	Rmu_sc0000876.1_g000034 Rmu_sc0001714.1_g000009
rosa_roxburghii	Rroxscaffold_3G00253550
rosa_rugosa	Rorug07G0078900
rosa_samantha	Rh7AG208600 Rh7BG207400 Rh7CG220600 Rh7DG215400
rosa_wichuraiana	Rw7G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	689
AccB1I	GGYRCC	1 cut(s)	434
AccI	GTMKAC	1 cut(s)	390
AccII	CGCG	7 cut(s)	195, 382, 462, 470, 488, 524, 526
AcoI	YGGCCR	3 cut(s)	3, 510, 549
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	520
AcyI	GRCGYC	2 cut(s)	368, 435
AfaI	GTAC	3 cut(s)	329, 416, 521
AgeI	ACCGGT	1 cut(s)	608
AgsI	TTSAA	1 cut(s)	682
AluBI	AGCT	4 cut(s)	39, 337, 631, 716
AluI	AGCT	4 cut(s)	39, 337, 631, 716
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	1 cut(s)	575
AoxI	GGCC	5 cut(s)	3, 238, 358, 510, 549
ApeKI	GCWGC	1 cut(s)	447
ApoI	RAATTY	1 cut(s)	98
AsiGI	ACCGGT	1 cut(s)	608
AspLEI	GCGC	8 cut(s)	179, 197, 384, 437, 472, 488, 526, 528
AspS9I	GGNCC	2 cut(s)	606, 701
AsuC2I	CCSGG	1 cut(s)	365
AsuHPI	GGTGA	5 cut(s)	34, 143, 292, 623, 631
AvaII	GGWCC	2 cut(s)	606, 701
BalI	TGGCCA	1 cut(s)	551
BanI	GGYRCC	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	434
BccI	CCATC	4 cut(s)	29, 131, 428, 695
BceAI	ACGGC	2 cut(s)	253, 627
BclI	TGATCA	1 cut(s)	648
BcnI	CCSGG	1 cut(s)	365
BcoDI	GTCTC	1 cut(s)	575
BfaI	CTAG	1 cut(s)	36
BfoI	RGCGCY	2 cut(s)	180, 438
BfuAI	ACCTGC	1 cut(s)	689
BglI	GCCNNNNNGGC	1 cut(s)	743
BlpI	GCTNAGC	1 cut(s)	632
BmcAI	AGTACT	1 cut(s)	416
Bme1390I	CCNGG	1 cut(s)	365
Bme18I	GGWCC	2 cut(s)	606, 701
BmgT120I	GGNCC	2 cut(s)	606, 701
BmiI	GGNNCC	2 cut(s)	343, 436
BmrFI	CCNGG	1 cut(s)	365
BmrI	ACTGGG	1 cut(s)	672
BmsI	GCATC	2 cut(s)	537, 685
BmuI	ACTGGG	1 cut(s)	672
Bpu1102I	GCTNAGC	1 cut(s)	632
BpuMI	CCSGG	1 cut(s)	365
BsaHI	GRCGYC	2 cut(s)	368, 435
BsaJI	CCNNGG	1 cut(s)	235
BsaWI	WCCGGW	2 cut(s)	608, 703
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bse118I	RCCGGY	3 cut(s)	472, 554, 608
Bse1I	ACTGG	1 cut(s)	667
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	3 cut(s)	123, 700, 756
BseMII	CTCAG	1 cut(s)	623
BseNI	ACTGG	1 cut(s)	667
BsePI	GCGCGC	1 cut(s)	524
BseRI	GAGGAG	2 cut(s)	106, 611
BseXI	GCAGC	1 cut(s)	434
BseYI	CCCAGC	1 cut(s)	746
BsgI	GTGCAG	1 cut(s)	622
Bsh1236I	CGCG	7 cut(s)	195, 382, 462, 470, 488, 524, 526
BshFI	GGCC	5 cut(s)	5, 240, 360, 512, 551
BshNI	GGYRCC	1 cut(s)	434
BshTI	ACCGGT	1 cut(s)	608
BsiHKAI	GWGCWC	1 cut(s)	468
BsiSI	CCGG	5 cut(s)	365, 473, 555, 609, 704
BsiWI	CGTACG	1 cut(s)	519
BslFI	GGGAC	2 cut(s)	293, 442
BsmAI	GTCTC	1 cut(s)	575
BsmBI	CGTCTC	1 cut(s)	575
BsmFI	GGGAC	2 cut(s)	293, 442
BsnI	GGCC	5 cut(s)	5, 240, 360, 512, 551
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	1 cut(s)	648
Bsp1720I	GCTNAGC	1 cut(s)	632
BspANI	GGCC	5 cut(s)	5, 240, 360, 512, 551
BspCNI	CTCAG	1 cut(s)	624
BspFNI	CGCG	7 cut(s)	195, 382, 462, 470, 488, 524, 526
BspLI	GGNNCC	2 cut(s)	343, 436
BspMI	ACCTGC	1 cut(s)	689
BspT107I	GGYRCC	1 cut(s)	434
BsrFI	RCCGGY	3 cut(s)	472, 554, 608
BsrI	ACTGG	1 cut(s)	667
BssAI	RCCGGY	3 cut(s)	472, 554, 608
BssECI	CCNNGG	1 cut(s)	235
BssHII	GCGCGC	1 cut(s)	524
BssMI	GATC	1 cut(s)	648
BssNI	GRCGYC	2 cut(s)	368, 435
BstACI	GRCGYC	2 cut(s)	368, 435
BstC8I	GCNNGC	3 cut(s)	464, 468, 526
BstDEI	CTNAG	1 cut(s)	632
BstDSI	CCRYGG	1 cut(s)	235
BstF5I	GGATG	3 cut(s)	123, 700, 756
BstFNI	CGCG	7 cut(s)	195, 382, 462, 470, 488, 524, 526
BstH2I	RGCGCY	2 cut(s)	180, 438
BstHHI	GCGC	8 cut(s)	179, 197, 384, 437, 472, 488, 526, 528
BstKTI	GATC	1 cut(s)	651
BstMAI	GTCTC	1 cut(s)	575
BstMBI	GATC	1 cut(s)	648
BstMWI	GCNNNNNNNGC	8 cut(s)	203, 459, 476, 485, 497, 509, 600, 743
BstSCI	CCNGG	1 cut(s)	363
BstUI	CGCG	7 cut(s)	195, 382, 462, 470, 488, 524, 526
BstV1I	GCAGC	1 cut(s)	434
BsuRI	GGCC	5 cut(s)	5, 240, 360, 512, 551
BtgI	CCRYGG	1 cut(s)	235
BtsCI	GGATG	3 cut(s)	123, 700, 756
BveI	ACCTGC	1 cut(s)	689
Cac8I	GCNNGC	3 cut(s)	464, 468, 526
CfoI	GCGC	8 cut(s)	179, 197, 384, 437, 472, 488, 526, 528
Cfr10I	RCCGGY	3 cut(s)	472, 554, 608
Cfr13I	GGNCC	2 cut(s)	606, 701
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	3 cut(s)	328, 415, 520
CspAI	ACCGGT	1 cut(s)	608
CviQI	GTAC	3 cut(s)	328, 415, 520
DdeI	CTNAG	1 cut(s)	632
DinI	GGCGCC	1 cut(s)	436
DpnI	GATC	1 cut(s)	650
DpnII	GATC	1 cut(s)	648
EaeI	YGGCCR	3 cut(s)	3, 510, 549
EciI	GGCGGA	1 cut(s)	190
Eco47I	GGWCC	2 cut(s)	606, 701
Eco57I	CTGAAG	1 cut(s)	520
EgeI	GGCGCC	1 cut(s)	436
EheI	GGCGCC	1 cut(s)	436
Esp3I	CGTCTC	1 cut(s)	575
FaiI	YATR	3 cut(s)	675, 725, 735
FaqI	GGGAC	2 cut(s)	293, 442
FauI	CCCGC	5 cut(s)	136, 295, 467, 484, 576
FbaI	TGATCA	1 cut(s)	648
FblI	GTMKAC	1 cut(s)	390
FokI	GGATG	3 cut(s)	110, 707, 763
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	8 cut(s)	178, 196, 383, 436, 471, 487, 525, 527
GsaI	CCCAGC	1 cut(s)	750
HaeII	RGCGCY	2 cut(s)	180, 438
HaeIII	GGCC	5 cut(s)	5, 240, 360, 512, 551
HapII	CCGG	5 cut(s)	365, 473, 555, 609, 704
HgaI	GACGC	1 cut(s)	357
HhaI	GCGC	8 cut(s)	179, 197, 384, 437, 472, 488, 526, 528
Hin1I	GRCGYC	2 cut(s)	368, 435
Hin6I	GCGC	8 cut(s)	177, 195, 382, 435, 470, 486, 524, 526
HinP1I	GCGC	8 cut(s)	177, 195, 382, 435, 470, 486, 524, 526
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	3 cut(s)	515, 575, 754
HpaII	CCGG	5 cut(s)	365, 473, 555, 609, 704
HphI	GGTGA	5 cut(s)	34, 143, 292, 623, 631
Hpy166II	GTNNAC	2 cut(s)	391, 565
Hpy188I	TCNGA	4 cut(s)	325, 580, 648, 713
Hpy188III	TCNNGA	1 cut(s)	538
Hpy8I	GTNNAC	2 cut(s)	391, 565
Hpy99I	CGWCG	3 cut(s)	254, 257, 392
HpyAV	CCTTC	3 cut(s)	158, 193, 241
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	2 cut(s)	603, 698
HpyF10VI	GCNNNNNNNGC	8 cut(s)	203, 459, 476, 485, 497, 509, 600, 743
HpyF3I	CTNAG	1 cut(s)	632
HpySE526I	ACGT	1 cut(s)	249
Hsp92I	GRCGYC	2 cut(s)	368, 435
HspAI	GCGC	8 cut(s)	177, 195, 382, 435, 470, 486, 524, 526
KasI	GGCGCC	1 cut(s)	434
Ksp22I	TGATCA	1 cut(s)	648
Kzo9I	GATC	1 cut(s)	648
LmnI	GCTCC	1 cut(s)	347
Lsp1109I	GCAGC	1 cut(s)	434
LweI	GCATC	2 cut(s)	537, 685
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	249
MalI	GATC	1 cut(s)	650
MboI	GATC	1 cut(s)	648
MboII	GAAGA	2 cut(s)	523, 526
MhlI	GDGCHC	1 cut(s)	468
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	1 cut(s)	98
MluNI	TGGCCA	1 cut(s)	551
Mly113I	GGCGCC	1 cut(s)	435
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	1 cut(s)	339
Mox20I	TGGCCA	1 cut(s)	551
MscI	TGGCCA	1 cut(s)	551
Msp20I	TGGCCA	1 cut(s)	551
MspA1I	CMGCKG	1 cut(s)	571
MspI	CCGG	5 cut(s)	365, 473, 555, 609, 704
MspR9I	CCNGG	1 cut(s)	365
MvnI	CGCG	7 cut(s)	195, 382, 462, 470, 488, 524, 526
MwoI	GCNNNNNNNGC	8 cut(s)	203, 459, 476, 485, 497, 509, 600, 743
NarI	GGCGCC	1 cut(s)	435
NciI	CCSGG	1 cut(s)	365
NdeII	GATC	1 cut(s)	648
NlaIV	GGNNCC	2 cut(s)	343, 436
NmeAIII	GCCGAG	3 cut(s)	318, 462, 538
PauI	GCGCGC	1 cut(s)	524
PcsI	WCGNNNNNNNCGW	2 cut(s)	255, 396
PfeI	GAWTC	2 cut(s)	575, 754
Pfl23II	CGTACG	1 cut(s)	519
PinAI	ACCGGT	1 cut(s)	608
PleI	GAGTC	1 cut(s)	523
PluTI	GGCGCC	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	523
PspFI	CCCAGC	1 cut(s)	746
PspLI	CGTACG	1 cut(s)	519
PspN4I	GGNNCC	2 cut(s)	343, 436
PspPI	GGNCC	2 cut(s)	606, 701
PteI	GCGCGC	1 cut(s)	524
RsaI	GTAC	3 cut(s)	329, 416, 521
RsaNI	GTAC	3 cut(s)	328, 415, 520
SalI	GTCGAC	1 cut(s)	389
Sau3AI	GATC	1 cut(s)	648
Sau96I	GGNCC	2 cut(s)	606, 701
ScaI	AGTACT	1 cut(s)	416
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	1 cut(s)	365
SduI	GDGCHC	1 cut(s)	468
SfaNI	GCATC	2 cut(s)	537, 685
SfoI	GGCGCC	1 cut(s)	436
SgrAI	CRCCGGYG	2 cut(s)	472, 554
SinI	GGWCC	2 cut(s)	606, 701
Sse9I	AATT	1 cut(s)	98
SspDI	GGCGCC	1 cut(s)	434
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	363
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	267, 390
TasI	AATT	1 cut(s)	98
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	9 cut(s)	8, 11, 206, 209, 360, 435, 453, 491, 503
TfiI	GAWTC	2 cut(s)	575, 754
TseI	GCWGC	1 cut(s)	447
VpaK11BI	GGWCC	2 cut(s)	606, 701
XapI	RAATTY	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	390
XspI	CTAG	1 cut(s)	36
ZrmI	AGTACT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.