Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012022

Physical Location & Seq

Genomic Coordinates Reverse (-)

47640210 .. 47641765

Gene Structure 1556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00253550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCCGCCACCTCCCTCTCCATCTCTCCAAACCCTAGCTTCACCACCACCTCCTCTCACAAACCCTCTCCCTCTCTCTCAACCCCAACCCACCTCAAATTCTCAAGCACCACCACCACCTCCCCCATCCCCGCCAAATCCCTATCCACCCAACGCCTCTCCCAAACCCCACCCCCACGCGCCACCTTCTCCACACGCGCCGCCGCCGCCTCCGCCACTCCCTCCACTGCCTTTCACGGCCTCTGCTACGTCGTGGGCGACAACATCGACACCGACCAGATCATCCCCGCCGAGTACCTCACCCTCGTCCCCTCCAACCCCTCCGAGTACGAGAAGCTCGGCTCCTACGCCCTCTGCGGCCTCCCGGCGTCCTACTCCACGCGCTTCGTCGACCCCAACGAGACCAAGTCCAAGTACTCCATCGTCATCGGCGGCGCCAACTTCGGCTGCGGCTCGTCCCGCGAGCACGCGCCGGTGGCTCTCGGCGCGGCGGGAGTGGCGGCGGTGGTGGCGGAGTCGTACGCGCGCATCTTCTTCAGGAACTCGGTGGCCACCGGCGAGGTGTACCCGCTGGAATCGGAGACGAGGATTTGCGAGGAGTGCAGGACCGGTGATGTGGTGAGCATTGAGCTGAGCGAGAGCCGTCTGATCAATCACACGACTGGTAAAGAGTATGTGTTGAAGCCGATCGGGGATGCCGGTCCGGTTATCAGAGCCGGTGGGATATTTGCTTATGCCAGAGAGGCTGGCATGATTCCAACTTTGTCCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003861 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0016829 GO:0016835 GO:0016836 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0048229 GO:0048856 GO:0050896 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase_C

Protein Analysis

257

Amino Acids

26.96

Weight (kDa)

6.52

Isoelectric Point (pI)

39.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase_C	PF00694	138 - 186	1.4e-17	Aconitase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43090 AT2G43090
fragaria_vesca	FvH4_5g19250 FvH4_5g19250
malus_domestica	MD04G1062100.v1.1 MD06G1055800.v1.1
prunus_persica	Prupe.5G066300_v2.0.a1
pyrus_communis	pycom04g05570 pycom06g04670
rosa_laevigata	RLG00000003506
rosa_multiflora	Rmu_sc0000876.1_g000034 Rmu_sc0001714.1_g000009
rosa_roxburghii	Rroxscaffold_3G00253550
rosa_rugosa	Rorug07G0078900
rosa_samantha	Rh7AG208600 Rh7BG207400 Rh7CG220600 Rh7DG215400
rosa_wichuraiana	Rw7G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	434
AccI	GTMKAC	1 cut(s)	390
AccII	CGCG	8 cut(s)	180, 198, 382, 462, 470, 488, 524, 526
AcoI	YGGCCR	2 cut(s)	3, 549
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	520
AcyI	GRCGYC	2 cut(s)	368, 435
AfaI	GTAC	5 cut(s)	296, 329, 416, 521, 566
AgeI	ACCGGT	1 cut(s)	608
AgsI	TTSAA	1 cut(s)	682
AluBI	AGCT	3 cut(s)	39, 337, 631
AluI	AGCT	3 cut(s)	39, 337, 631
Alw21I	GWGCWC	1 cut(s)	468
Alw26I	GTCTC	2 cut(s)	395, 575
AoxI	GGCC	4 cut(s)	3, 238, 358, 549
ApeKI	GCWGC	1 cut(s)	447
ApoI	RAATTY	1 cut(s)	98
AsiGI	ACCGGT	1 cut(s)	608
AspLEI	GCGC	8 cut(s)	182, 200, 384, 437, 472, 488, 526, 528
AspS9I	GGNCC	2 cut(s)	606, 701
AsuC2I	CCSGG	1 cut(s)	365
AsuHPI	GGTGA	4 cut(s)	34, 292, 623, 631
AvaII	GGWCC	2 cut(s)	606, 701
BalI	TGGCCA	1 cut(s)	551
BanI	GGYRCC	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	434
BccI	CCATC	3 cut(s)	29, 134, 428
BceAI	ACGGC	2 cut(s)	253, 627
BclI	TGATCA	1 cut(s)	648
BcnI	CCSGG	1 cut(s)	365
BcoDI	GTCTC	2 cut(s)	395, 575
BfaI	CTAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	438
BglI	GCCNNNNNGGC	1 cut(s)	743
BlpI	GCTNAGC	1 cut(s)	632
BmcAI	AGTACT	1 cut(s)	416
Bme1390I	CCNGG	1 cut(s)	365
Bme18I	GGWCC	2 cut(s)	606, 701
BmgT120I	GGNCC	2 cut(s)	606, 701
BmiI	GGNNCC	2 cut(s)	343, 436
BmrFI	CCNGG	1 cut(s)	365
BmsI	GCATC	2 cut(s)	537, 685
Bpu1102I	GCTNAGC	1 cut(s)	632
BpuEI	CTTGAG	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	365
BsaHI	GRCGYC	2 cut(s)	368, 435
BsaI	GGTCTC	1 cut(s)	395
BsaWI	WCCGGW	3 cut(s)	608, 703, 767
Bse118I	RCCGGY	5 cut(s)	472, 554, 608, 698, 716
Bse1I	ACTGG	1 cut(s)	667
BseGI	GGATG	3 cut(s)	126, 282, 700
BseMII	CTCAG	1 cut(s)	623
BseNI	ACTGG	1 cut(s)	667
BsePI	GCGCGC	1 cut(s)	524
BseRI	GAGGAG	2 cut(s)	43, 611
BseXI	GCAGC	1 cut(s)	434
BsgI	GTGCAG	1 cut(s)	622
Bsh1236I	CGCG	8 cut(s)	180, 198, 382, 462, 470, 488, 524, 526
Bsh1285I	CGRYCG	1 cut(s)	690
BshFI	GGCC	4 cut(s)	5, 240, 360, 551
BshNI	GGYRCC	1 cut(s)	434
BshTI	ACCGGT	1 cut(s)	608
BsiEI	CGRYCG	1 cut(s)	690
BsiHKAI	GWGCWC	1 cut(s)	468
BsiSI	CCGG	8 cut(s)	365, 473, 555, 609, 699, 704, 717, 768
BsiWI	CGTACG	1 cut(s)	519
BslFI	GGGAC	2 cut(s)	293, 442
BsmAI	GTCTC	2 cut(s)	395, 575
BsmBI	CGTCTC	1 cut(s)	575
BsmFI	GGGAC	2 cut(s)	293, 442
BsnI	GGCC	4 cut(s)	5, 240, 360, 551
Bso31I	GGTCTC	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	3 cut(s)	279, 648, 687
Bsp1720I	GCTNAGC	1 cut(s)	632
BspANI	GGCC	4 cut(s)	5, 240, 360, 551
BspCNI	CTCAG	1 cut(s)	624
BspFNI	CGCG	8 cut(s)	180, 198, 382, 462, 470, 488, 524, 526
BspLI	GGNNCC	2 cut(s)	343, 436
BspT107I	GGYRCC	1 cut(s)	434
BspTNI	GGTCTC	1 cut(s)	395
BsrFI	RCCGGY	5 cut(s)	472, 554, 608, 698, 716
BsrI	ACTGG	1 cut(s)	667
BssAI	RCCGGY	5 cut(s)	472, 554, 608, 698, 716
BssHII	GCGCGC	1 cut(s)	524
BssMI	GATC	3 cut(s)	279, 648, 687
BssNI	GRCGYC	2 cut(s)	368, 435
BstACI	GRCGYC	2 cut(s)	368, 435
BstC8I	GCNNGC	4 cut(s)	464, 468, 526, 748
BstDEI	CTNAG	1 cut(s)	632
BstF5I	GGATG	3 cut(s)	126, 282, 700
BstFNI	CGCG	8 cut(s)	180, 198, 382, 462, 470, 488, 524, 526
BstH2I	RGCGCY	1 cut(s)	438
BstHHI	GCGC	8 cut(s)	182, 200, 384, 437, 472, 488, 526, 528
BstKTI	GATC	3 cut(s)	282, 651, 690
BstMAI	GTCTC	2 cut(s)	395, 575
BstMBI	GATC	3 cut(s)	279, 648, 687
BstMCI	CGRYCG	1 cut(s)	690
BstMWI	GCNNNNNNNGC	9 cut(s)	206, 212, 459, 476, 485, 497, 509, 600, 743
BstSCI	CCNGG	1 cut(s)	363
BstUI	CGCG	8 cut(s)	180, 198, 382, 462, 470, 488, 524, 526
BstV1I	GCAGC	1 cut(s)	434
BsuRI	GGCC	4 cut(s)	5, 240, 360, 551
BtsCI	GGATG	3 cut(s)	126, 282, 700
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	4 cut(s)	464, 468, 526, 748
CfoI	GCGC	8 cut(s)	182, 200, 384, 437, 472, 488, 526, 528
Cfr10I	RCCGGY	5 cut(s)	472, 554, 608, 698, 716
Cfr13I	GGNCC	2 cut(s)	606, 701
CpoI	CGGWCCG	1 cut(s)	701
CseI	GACGC	1 cut(s)	357
Csp6I	GTAC	5 cut(s)	295, 328, 415, 520, 565
CspAI	ACCGGT	1 cut(s)	608
CspI	CGGWCCG	1 cut(s)	701
CviAII	CATG	1 cut(s)	751
CviQI	GTAC	5 cut(s)	295, 328, 415, 520, 565
DdeI	CTNAG	1 cut(s)	632
DinI	GGCGCC	1 cut(s)	436
DpnI	GATC	3 cut(s)	281, 650, 689
DpnII	GATC	3 cut(s)	279, 648, 687
EaeI	YGGCCR	2 cut(s)	3, 549
EciI	GGCGGA	2 cut(s)	202, 527
Eco31I	GGTCTC	1 cut(s)	395
Eco47I	GGWCC	2 cut(s)	606, 701
Eco57I	CTGAAG	1 cut(s)	520
EgeI	GGCGCC	1 cut(s)	436
EheI	GGCGCC	1 cut(s)	436
Esp3I	CGTCTC	1 cut(s)	575
FaeI	CATG	1 cut(s)	754
FaiI	YATR	3 cut(s)	675, 735, 752
FaqI	GGGAC	2 cut(s)	293, 442
FatI	CATG	1 cut(s)	750
FauI	CCCGC	5 cut(s)	139, 295, 467, 484, 576
FbaI	TGATCA	1 cut(s)	648
FblI	GTMKAC	1 cut(s)	390
FokI	GGATG	3 cut(s)	113, 269, 707
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	8 cut(s)	181, 199, 383, 436, 471, 487, 525, 527
HaeII	RGCGCY	1 cut(s)	438
HaeIII	GGCC	4 cut(s)	5, 240, 360, 551
HapII	CCGG	8 cut(s)	365, 473, 555, 609, 699, 704, 717, 768
HgaI	GACGC	1 cut(s)	357
HhaI	GCGC	8 cut(s)	182, 200, 384, 437, 472, 488, 526, 528
Hin1I	GRCGYC	2 cut(s)	368, 435
Hin1II	CATG	1 cut(s)	754
Hin6I	GCGC	8 cut(s)	180, 198, 382, 435, 470, 486, 524, 526
HinP1I	GCGC	8 cut(s)	180, 198, 382, 435, 470, 486, 524, 526
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HinfI	GANTC	3 cut(s)	515, 575, 754
HpaII	CCGG	8 cut(s)	365, 473, 555, 609, 699, 704, 717, 768
HphI	GGTGA	4 cut(s)	34, 292, 623, 631
Hpy166II	GTNNAC	2 cut(s)	391, 565
Hpy188I	TCNGA	4 cut(s)	325, 580, 648, 713
Hpy188III	TCNNGA	1 cut(s)	538
Hpy8I	GTNNAC	2 cut(s)	391, 565
Hpy99I	CGWCG	2 cut(s)	254, 392
HpyAV	CCTTC	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	1 cut(s)	603
HpyF10VI	GCNNNNNNNGC	9 cut(s)	206, 212, 459, 476, 485, 497, 509, 600, 743
HpyF3I	CTNAG	1 cut(s)	632
HpySE526I	ACGT	1 cut(s)	249
Hsp92I	GRCGYC	2 cut(s)	368, 435
Hsp92II	CATG	1 cut(s)	754
HspAI	GCGC	8 cut(s)	180, 198, 382, 435, 470, 486, 524, 526
KasI	GGCGCC	1 cut(s)	434
Ksp22I	TGATCA	1 cut(s)	648
Kzo9I	GATC	3 cut(s)	279, 648, 687
LmnI	GCTCC	1 cut(s)	347
Lsp1109I	GCAGC	1 cut(s)	434
LweI	GCATC	2 cut(s)	537, 685
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	249
MalI	GATC	3 cut(s)	281, 650, 689
MboI	GATC	3 cut(s)	279, 648, 687
MboII	GAAGA	2 cut(s)	523, 526
MhlI	GDGCHC	1 cut(s)	468
MlsI	TGGCCA	1 cut(s)	551
MluCI	AATT	1 cut(s)	98
MluNI	TGGCCA	1 cut(s)	551
Mly113I	GGCGCC	1 cut(s)	435
MlyI	GAGTC	1 cut(s)	524
MmeI	TCCRAC	1 cut(s)	339
Mox20I	TGGCCA	1 cut(s)	551
MscI	TGGCCA	1 cut(s)	551
Msp20I	TGGCCA	1 cut(s)	551
MspA1I	CMGCKG	1 cut(s)	571
MspI	CCGG	8 cut(s)	365, 473, 555, 609, 699, 704, 717, 768
MspR9I	CCNGG	1 cut(s)	365
MvnI	CGCG	8 cut(s)	180, 198, 382, 462, 470, 488, 524, 526
MwoI	GCNNNNNNNGC	9 cut(s)	206, 212, 459, 476, 485, 497, 509, 600, 743
NarI	GGCGCC	1 cut(s)	435
NciI	CCSGG	1 cut(s)	365
NdeII	GATC	3 cut(s)	279, 648, 687
NlaIII	CATG	1 cut(s)	754
NlaIV	GGNNCC	2 cut(s)	343, 436
NmeAIII	GCCGAG	3 cut(s)	316, 318, 462
PauI	GCGCGC	1 cut(s)	524
PcsI	WCGNNNNNNNCGW	2 cut(s)	255, 396
PfeI	GAWTC	2 cut(s)	575, 754
Pfl23II	CGTACG	1 cut(s)	519
PflFI	GACNNNGTC	1 cut(s)	406
PinAI	ACCGGT	1 cut(s)	608
Ple19I	CGATCG	1 cut(s)	690
PleI	GAGTC	1 cut(s)	523
PluTI	GGCGCC	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	523
PspLI	CGTACG	1 cut(s)	519
PspN4I	GGNNCC	2 cut(s)	343, 436
PspPI	GGNCC	2 cut(s)	606, 701
PsyI	GACNNNGTC	1 cut(s)	406
PteI	GCGCGC	1 cut(s)	524
PvuI	CGATCG	1 cut(s)	690
RsaI	GTAC	5 cut(s)	296, 329, 416, 521, 566
RsaNI	GTAC	5 cut(s)	295, 328, 415, 520, 565
Rsr2I	CGGWCCG	1 cut(s)	701
RsrII	CGGWCCG	1 cut(s)	701
SalI	GTCGAC	1 cut(s)	389
Sau3AI	GATC	3 cut(s)	279, 648, 687
Sau96I	GGNCC	2 cut(s)	606, 701
ScaI	AGTACT	1 cut(s)	416
SchI	GAGTC	1 cut(s)	524
ScrFI	CCNGG	1 cut(s)	365
SduI	GDGCHC	1 cut(s)	468
SfaNI	GCATC	2 cut(s)	537, 685
SfoI	GGCGCC	1 cut(s)	436
SgrAI	CRCCGGYG	2 cut(s)	472, 554
SinI	GGWCC	2 cut(s)	606, 701
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
Sse9I	AATT	1 cut(s)	98
SspDI	GGCGCC	1 cut(s)	434
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	363
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	2 cut(s)	267, 390
TasI	AATT	1 cut(s)	98
TatI	WGTACW	1 cut(s)	414
TauI	GCSGC	9 cut(s)	8, 203, 206, 209, 360, 435, 453, 491, 503
TfiI	GAWTC	2 cut(s)	575, 754
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	1 cut(s)	447
TspRI	CASTG	1 cut(s)	232
Tth111I	GACNNNGTC	1 cut(s)	406
VpaK11BI	GGWCC	2 cut(s)	606, 701
XapI	RAATTY	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	390
XspI	CTAG	1 cut(s)	36
ZrmI	AGTACT	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.