Rorug07G0078900

DWNN domain, A CCHC-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0001377
Physical Location & Seq
Forward (+)
6119229 .. 6122876
3648 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0078900.1

Sequence Viewer

Length: 1350 bp
ATGGGTGAGATTATTTCCTCATGTTCTTCACCCTACAATGTTTATCCAAAAACTACCTCAGCCACATTGCTTCAACAACGTCTCCAATTCATACTTCAGAACCGCCCTGAAACCTGGGTTTACTCCATTTTCTGGAAAGCCTCCAAAGACAGTAACGACGACAACGGCGTTTCTTTGTCATGGGCCGGAGGCCATTTCAGAGGCATTAGAGACTTCTCATCCAAAAAATCAAGCATTCAGAACTCAGATAATAACTACCGACCCAGATTTGGGATGGTCAACAGAGAGATCGAAGCGCTGTGTCATGACGACATGGACTCGGAGAGATTTGAAGACATTAACGGAGACGTGACTGACTCCGAGTGGTTCTACTTCTACACCGTCTCTTTAACACAGTCGTTTGCTGCAGGCCACAATGGGAATTCCAACATTCTGGGCCGTGTGCATTCTTCTAGTGCTTTCATTTGGTTGGCAGGAGATGGTGAGTTTCAGTTCTATGAGTGTGAGAGAGTACAAGAGGCTCGCATGCATGGAATTCGAACTCTGGTTTGTGTTGCAACTTATAGTGGGGTGCTTGAAGTGGCTTCTTTGGATGTGATTAAAGAAGACTGGGGTTTTGTGCAGCAAGCAAAATCACTTTTTGGAATATCAGACTCCAACTCAAAGCAGGGAAGCCAGGAGTCTCATGTTCACGTTCCACTGCCCCAAAATGGATTAATGTTTTCAGCAACTCAAAAGCAGTCGAATACACATGGTGGGTTGTCATCTGATTCAGGGCCTTCTGAAAATATAGAGAATAATCGATCAAAAAAGAGAGGGAGGTCATCAAGCCATGTGAACGGCAGACGAGAATCACCACCACTAAACCATGTGGAGGCAGAGAGACAACGACGTGAAAGGCTGAATCATCGATTCTATGCTCTGAGAGCTGCTGTTCCAAATGTGTCAAGGATGGACAAAGCTTCTTTACTTGCTGATGCAGTTGAGTACATCAATAATCTGAAGACAAAGATTGATAAACTGGAGGCCAAAATCCAAGCACAAACCAAGATACCCAAAGTGGGTAGCACCAACTCCATAAGTTACAGAGCATCTGCTGTTATGGAAGTGGATGTGAAATTTGTAGGCTCTGAAGCAATGATTCGAGTTCGGAGTACGGATAATGAGGACTATCCATATGCAAGATTGATGAATGCACTCAAAGACCTCGAATTGCATATTTATCATGCAAGCATTTCAAGTGTGAAGGAGTTTATGCTTCAAGATGTTGTGGCACGAGTTCCATTTGGATTCACAAGTGAGGAGGCCATGAGAACCGCCATTATAAAAAGATTGTCAAACTTTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

449

Amino Acids

50.57

Weight (kDa)

7.23

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bHLH-MYC_N PF14215 24 - 214 4.9e-39 bHLH-MYC and R2R3-MYB transcription factors N-terminal
HLH PF00010 289 - 335 1.3e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1325
AccB7I CCANNNNNTGG 1 cut(s) 132
AciI CCGC 2 cut(s) 103, 1317
AcsI RAATTY 3 cut(s) 421, 534, 1118
AcuI CTGAAG 3 cut(s) 80, 1022, 1152
AdeI CACNNNGTG 1 cut(s) 755
AfaI GTAC 3 cut(s) 513, 989, 1156
AfeI AGCGCT 1 cut(s) 297
AfiI CCNNNNNNNGG 6 cut(s) 132, 269, 270, 710, 874, 1061
AgsI TTSAA 5 cut(s) 74, 332, 578, 1239, 1262
AjiI CACGTC 2 cut(s) 349, 893
AjnI CCWGG 2 cut(s) 113, 675
AjuI GAANNNNNNNTTGG 2 cut(s) 78, 110
AluBI AGCT 2 cut(s) 929, 962
AluI AGCT 2 cut(s) 929, 962
Alw26I GTCTC 6 cut(s) 86, 204, 339, 388, 687, 877
Aor51HI AGCGCT 1 cut(s) 297
AoxI GGCC 7 cut(s) 183, 190, 409, 436, 776, 1026, 1305
ApeKI GCWGC 3 cut(s) 404, 622, 929
ApoI RAATTY 3 cut(s) 421, 534, 1118
ArsI GACNNNNNNTTYG 2 cut(s) 599, 631
AseI ATTAAT 1 cut(s) 716
AspLEI GCGC 1 cut(s) 298
AspS9I GGNCC 3 cut(s) 183, 436, 776
AsuHPI GGTGA 4 cut(s) 17, 21, 494, 846
AsuII TTCGAA 1 cut(s) 538
BauI CACGAG 1 cut(s) 1275
BbsI GAAGAC 3 cut(s) 339, 612, 1010
BbvCI CCTCAGC 1 cut(s) 58
BbvI GCAGC 3 cut(s) 391, 634, 916
BccI CCATC 3 cut(s) 268, 473, 946
BceAI ACGGC 3 cut(s) 181, 423, 856
BcgI CGANNNNNNTGC 2 cut(s) 518, 552
BciT130I CCWGG 2 cut(s) 115, 677
BcoDI GTCTC 6 cut(s) 86, 204, 339, 388, 687, 877
BfaI CTAG 2 cut(s) 453, 1348
BfmI CTRYAG 1 cut(s) 405
BfoI RGCGCY 1 cut(s) 299
BisI GCNGC 3 cut(s) 405, 623, 930
BlsI GCNGC 3 cut(s) 406, 624, 931
Bme1390I CCNGG 2 cut(s) 115, 677
BmgBI CACGTC 2 cut(s) 349, 893
BmgT120I GGNCC 3 cut(s) 183, 436, 776
BmrFI CCNGG 2 cut(s) 115, 677
BmrI ACTGGG 1 cut(s) 619
BmsI GCATC 2 cut(s) 967, 1100
BmuI ACTGGG 1 cut(s) 619
BpiI GAAGAC 3 cut(s) 339, 612, 1010
BpmI CTGGAG 1 cut(s) 1043
Bpu10I CCTNAGC 1 cut(s) 58
Bpu14I TTCGAA 1 cut(s) 538
Bsa29I ATCGAT 2 cut(s) 802, 910
BsaJI CCNNGG 1 cut(s) 114
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 6 cut(s) 132, 269, 270, 710, 874, 1061
Bse1I ACTGG 2 cut(s) 614, 1026
Bse3DI GCAATG 2 cut(s) 65, 1143
BseBI CCWGG 2 cut(s) 115, 677
BseCI ATCGAT 2 cut(s) 802, 910
BseDI CCNNGG 1 cut(s) 114
BseGI GGATG 5 cut(s) 218, 279, 598, 957, 1117
BseLI CCNNNNNNNGG 6 cut(s) 132, 269, 270, 710, 874, 1061
BseMI GCAATG 2 cut(s) 65, 1143
BseMII CTCAG 3 cut(s) 72, 258, 914
BseNI ACTGG 2 cut(s) 614, 1026
BseRI GAGGAG 1 cut(s) 1316
BseXI GCAGC 3 cut(s) 391, 634, 916
BsgI GTGCAG 1 cut(s) 641
BshFI GGCC 7 cut(s) 185, 192, 411, 438, 778, 1028, 1307
BshVI ATCGAT 2 cut(s) 802, 910
BsiSI CCGG 1 cut(s) 186
BslI CCNNNNNNNGG 6 cut(s) 132, 269, 270, 710, 874, 1061
BsmAI GTCTC 6 cut(s) 86, 204, 339, 388, 687, 877
BsmBI CGTCTC 3 cut(s) 86, 339, 388
BsmI GAATGC 3 cut(s) 234, 445, 1198
BsnI GGCC 7 cut(s) 185, 192, 411, 438, 778, 1028, 1307
Bsp119I TTCGAA 1 cut(s) 538
Bsp143I GATC 2 cut(s) 288, 803
BspACI CCGC 2 cut(s) 103, 1317
BspANI GGCC 7 cut(s) 185, 192, 411, 438, 778, 1028, 1307
BspCNI CTCAG 3 cut(s) 71, 257, 915
BspDI ATCGAT 2 cut(s) 802, 910
BspHI TCATGA 1 cut(s) 304
BspMAI CTGCAG 1 cut(s) 409
BspT104I TTCGAA 1 cut(s) 538
BsrDI GCAATG 2 cut(s) 65, 1143
BsrI ACTGG 2 cut(s) 614, 1026
BssECI CCNNGG 1 cut(s) 114
BssMI GATC 2 cut(s) 288, 803
BssSI CACGAG 1 cut(s) 1275
Bst2BI CACGAG 1 cut(s) 1275
Bst2UI CCWGG 2 cut(s) 115, 677
Bst4CI ACNGT 3 cut(s) 152, 382, 396
BstBI TTCGAA 1 cut(s) 538
BstC8I GCNNGC 5 cut(s) 409, 523, 527, 627, 1231
BstDEI CTNAG 3 cut(s) 58, 244, 923
BstF5I GGATG 5 cut(s) 218, 279, 598, 957, 1117
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 1 cut(s) 298
BstKTI GATC 2 cut(s) 291, 806
BstMAI GTCTC 6 cut(s) 86, 204, 339, 388, 687, 877
BstMBI GATC 2 cut(s) 288, 803
BstMWI GCNNNNNNNGC 1 cut(s) 926
BstNI CCWGG 2 cut(s) 115, 677
BstNSI RCATGY 1 cut(s) 529
BstSCI CCNGG 2 cut(s) 113, 675
BstSFI CTRYAG 1 cut(s) 405
BstV1I GCAGC 3 cut(s) 391, 634, 916
BstV2I GAAGAC 3 cut(s) 339, 612, 1010
BstXI CCANNNNNNTGG 1 cut(s) 433
Bsu15I ATCGAT 2 cut(s) 802, 910
BsuRI GGCC 7 cut(s) 185, 192, 411, 438, 778, 1028, 1307
BsuTUI ATCGAT 2 cut(s) 802, 910
BtrI CACGTC 2 cut(s) 349, 893
BtsCI GGATG 5 cut(s) 218, 279, 598, 957, 1117
BtsI GCAGTG 1 cut(s) 698
BtsIMutI CAGTG 1 cut(s) 698
Cac8I GCNNGC 5 cut(s) 409, 523, 527, 627, 1231
CciI TCATGA 1 cut(s) 304
CfoI GCGC 1 cut(s) 298
Cfr13I GGNCC 3 cut(s) 183, 436, 776
ClaI ATCGAT 2 cut(s) 802, 910
Csp6I GTAC 3 cut(s) 512, 988, 1155
CviQI GTAC 3 cut(s) 512, 988, 1155
DdeI CTNAG 3 cut(s) 58, 244, 923
DpnI GATC 2 cut(s) 290, 805
DpnII GATC 2 cut(s) 288, 803
DraIII CACNNNGTG 1 cut(s) 755
Eco47III AGCGCT 1 cut(s) 297
Eco57I CTGAAG 3 cut(s) 80, 1022, 1152
EcoO109I RGGNCCY 1 cut(s) 776
EcoRI GAATTC 2 cut(s) 421, 534
EcoRII CCWGG 2 cut(s) 113, 675
EcoT22I ATGCAT 1 cut(s) 531
Esp3I CGTCTC 3 cut(s) 86, 339, 388
FauNDI CATATG 1 cut(s) 1177
Fnu4HI GCNGC 3 cut(s) 405, 623, 930
FokI GGATG 5 cut(s) 205, 286, 605, 964, 1124
Fsp4HI GCNGC 3 cut(s) 405, 623, 930
FspBI CTAG 2 cut(s) 453, 1348
GlaI GCGC 1 cut(s) 297
GluI GCNGC 3 cut(s) 405, 623, 930
GsuI CTGGAG 1 cut(s) 1043
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 7 cut(s) 185, 192, 411, 438, 778, 1028, 1307
HapII CCGG 1 cut(s) 186
HhaI GCGC 1 cut(s) 298
Hin6I GCGC 1 cut(s) 296
HinP1I GCGC 1 cut(s) 296
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HindIII AAGCTT 1 cut(s) 960
HpaII CCGG 1 cut(s) 186
HphI GGTGA 4 cut(s) 17, 21, 494, 846
Hpy166II GTNNAC 4 cut(s) 121, 280, 691, 838
Hpy188III TCNNGA 3 cut(s) 133, 305, 1262
Hpy8I GTNNAC 4 cut(s) 121, 280, 691, 838
Hpy99I CGWCG 2 cut(s) 161, 894
HpyAV CCTTC 2 cut(s) 789, 1240
HpyCH4III ACNGT 3 cut(s) 152, 382, 396
HpyCH4IV ACGT 4 cut(s) 79, 348, 693, 892
HpyF10VI GCNNNNNNNGC 1 cut(s) 926
HpyF3I CTNAG 3 cut(s) 58, 244, 923
HpySE526I ACGT 4 cut(s) 79, 348, 693, 892
HspAI GCGC 1 cut(s) 296
Kzo9I GATC 2 cut(s) 288, 803
Lsp1109I GCAGC 3 cut(s) 391, 634, 916
LweI GCATC 2 cut(s) 967, 1100
MaeI CTAG 2 cut(s) 453, 1348
MaeII ACGT 4 cut(s) 79, 348, 693, 892
MaeIII GTNAC 3 cut(s) 152, 349, 1082
MalI GATC 2 cut(s) 290, 805
MboI GATC 2 cut(s) 288, 803
MboII GAAGA 5 cut(s) 18, 344, 441, 617, 1015
MluCI AATT 5 cut(s) 86, 421, 534, 1118, 1211
MlyI GAGTC 4 cut(s) 311, 350, 647, 689
MmeI TCCRAC 2 cut(s) 450, 681
Mph1103I ATGCAT 1 cut(s) 531
MseI TTAA 4 cut(s) 339, 389, 600, 716
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 2 cut(s) 115, 677
Mva1269I GAATGC 3 cut(s) 234, 445, 1198
MvaI CCWGG 2 cut(s) 115, 677
MwoI GCNNNNNNNGC 1 cut(s) 926
NdeI CATATG 1 cut(s) 1177
NdeII GATC 2 cut(s) 288, 803
NmuCI GTSAC 1 cut(s) 349
NsiI ATGCAT 1 cut(s) 531
NspI RCATGY 1 cut(s) 529
NspV TTCGAA 1 cut(s) 538
PaeI GCATGC 1 cut(s) 529
PagI TCATGA 1 cut(s) 304
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 3 cut(s) 234, 445, 1198
PfeI GAWTC 6 cut(s) 770, 851, 904, 912, 1141, 1290
PflMI CCANNNNNTGG 1 cut(s) 132
PkrI GCNGC 3 cut(s) 406, 624, 931
PleI GAGTC 4 cut(s) 311, 350, 647, 688
PpsI GAGTC 4 cut(s) 311, 350, 647, 688
PshBI ATTAAT 1 cut(s) 716
PsiI TTATAA 1 cut(s) 1325
Psp6I CCWGG 2 cut(s) 113, 675
PspGI CCWGG 2 cut(s) 113, 675
PspPI GGNCC 3 cut(s) 183, 436, 776
PstI CTGCAG 1 cut(s) 409
RsaI GTAC 3 cut(s) 513, 989, 1156
RsaNI GTAC 3 cut(s) 512, 988, 1155
SaqAI TTAA 4 cut(s) 339, 389, 600, 716
SatI GCNGC 3 cut(s) 405, 623, 930
Sau3AI GATC 2 cut(s) 288, 803
Sau96I GGNCC 3 cut(s) 183, 436, 776
SchI GAGTC 4 cut(s) 311, 350, 647, 689
ScrFI CCNGG 2 cut(s) 115, 677
SfaNI GCATC 2 cut(s) 967, 1100
SfcI CTRYAG 1 cut(s) 405
SfuI TTCGAA 1 cut(s) 538
SphI GCATGC 1 cut(s) 529
Sse9I AATT 5 cut(s) 86, 421, 534, 1118, 1211
SsiI CCGC 2 cut(s) 103, 1317
SspMI CTAG 2 cut(s) 453, 1348
StyD4I CCNGG 2 cut(s) 113, 675
TaaI ACNGT 3 cut(s) 152, 382, 396
TaiI ACGT 4 cut(s) 82, 351, 696, 895
TaqI TCGA 7 cut(s) 291, 538, 743, 802, 910, 1144, 1209
TasI AATT 5 cut(s) 86, 421, 534, 1118, 1211
TatI WGTACW 2 cut(s) 511, 987
TfiI GAWTC 6 cut(s) 770, 851, 904, 912, 1141, 1290
Tru1I TTAA 4 cut(s) 339, 389, 600, 716
Tru9I TTAA 4 cut(s) 339, 389, 600, 716
TscAI CASTG 1 cut(s) 705
TseFI GTSAC 1 cut(s) 349
TseI GCWGC 3 cut(s) 404, 622, 929
Tsp45I GTSAC 1 cut(s) 349
TspDTI ATGAA 3 cut(s) 79, 451, 1205
TspGWI ACGGA 2 cut(s) 357, 1172
TspRI CASTG 1 cut(s) 705
Van91I CCANNNNNTGG 1 cut(s) 132
VspI ATTAAT 1 cut(s) 716
XapI RAATTY 3 cut(s) 421, 534, 1118
XceI RCATGY 1 cut(s) 529
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XspI CTAG 2 cut(s) 453, 1348
Zsp2I ATGCAT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.