Rh4DG297200

DWNN domain, A CCHC-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001377
Physical Location & Seq
Forward (+)
51909667 .. 51911008
1342 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG297200.1

Sequence Viewer

Length: 423 bp
ATGGTGATAGCAACCCCAGATGGCTCATATGCACTGCCGAGTGGTGCAGTAGCTGTATTGAGGCCGAATGAGGCTGCTTTTGAGAAAGAGATCGAAGGAAGTGATGAAAATGCTGTTTTAACGAGCAAGTGTTGCTTTAAGAGCTTTTGTGATGAGTGTATCAGGAATTACATTACCTCAAAGTCAGTGTGTGTCTGTGGGGCTACAAATACACTTGCAGATGATCTACTGCCAAATAAGACTCTCAGGGATACCATCAATCTAATCTTGGAGTCTGGTAACAGTAGCACTGATAACGCTGGGAGTGCTTTCCAAGTTCAAGGTGGTCACTCATTGCAGGGAGACTTCCAGGGCACTGAAATCAAGAATCACTTGGACCTATGTGCTATTTATCTTGATTTTGTTAATCTTGTTATAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

140

Amino Acids

14.97

Weight (kDa)

4.41

Isoelectric Point (pI)

31.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 320
AjnI CCWGG 1 cut(s) 348
AluBI AGCT 2 cut(s) 53, 144
AluI AGCT 2 cut(s) 53, 144
Alw26I GTCTC 1 cut(s) 336
AlwNI CAGNNNCTG 1 cut(s) 53
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 376
AsuHPI GGTGA 1 cut(s) 16
AvaII GGWCC 1 cut(s) 376
BaeGI GKGCMC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 61
BccI CCATC 2 cut(s) 14, 263
BciT130I CCWGG 1 cut(s) 350
BciVI GTATCC 1 cut(s) 244
BcoDI GTCTC 1 cut(s) 336
BfuI GTATCC 1 cut(s) 244
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 350
Bme18I GGWCC 1 cut(s) 376
BmgT120I GGNCC 1 cut(s) 376
BmrFI CCNGG 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 349
Bse3DI GCAATG 1 cut(s) 332
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 1 cut(s) 349
BseMI GCAATG 1 cut(s) 332
BseMII CTCAG 1 cut(s) 259
BseSI GKGCMC 1 cut(s) 356
BseXI GCAGC 1 cut(s) 61
BseYI CCCAGC 1 cut(s) 299
BsgI GTGCAG 1 cut(s) 66
BshFI GGCC 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 336
BsnI GGCC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 356
Bsp143I GATC 2 cut(s) 90, 223
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 332
BssECI CCNNGG 1 cut(s) 349
BssMI GATC 2 cut(s) 90, 223
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 1 cut(s) 284
BstAPI GCANNNNNTGC 1 cut(s) 132
BstDEI CTNAG 1 cut(s) 245
BstKTI GATC 2 cut(s) 93, 226
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 2 cut(s) 90, 223
BstMWI GCNNNNNNNGC 3 cut(s) 132, 141, 305
BstNI CCWGG 1 cut(s) 350
BstSCI CCNGG 1 cut(s) 348
BstSLI GKGCMC 1 cut(s) 356
BstV1I GCAGC 1 cut(s) 61
BsuI GTATCC 1 cut(s) 244
BsuRI GGCC 1 cut(s) 64
BtsI GCAGTG 1 cut(s) 32
BtsIMutI CAGTG 4 cut(s) 32, 192, 288, 354
CaiI CAGNNNCTG 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 376
CviJI RGCY 6 cut(s) 24, 53, 64, 74, 144, 203
CviKI_1 RGCY 6 cut(s) 24, 53, 64, 74, 144, 203
DdeI CTNAG 1 cut(s) 245
DpnI GATC 2 cut(s) 92, 225
DpnII GATC 2 cut(s) 90, 223
Eco47I GGWCC 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 348
FaiI YATR 4 cut(s) 28, 30, 382, 416
FalI AAGNNNNNCTT 4 cut(s) 119, 151, 356, 388
FauNDI CATATG 1 cut(s) 28
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
GsaI CCCAGC 1 cut(s) 303
HaeIII GGCC 1 cut(s) 64
HinfI GANTC 3 cut(s) 241, 272, 367
HphI GGTGA 1 cut(s) 16
Hpy188III TCNNGA 3 cut(s) 163, 364, 395
HpyAV CCTTC 1 cut(s) 89
HpyCH4III ACNGT 1 cut(s) 284
HpyCH4V TGCA 4 cut(s) 32, 47, 218, 337
HpyF10VI GCNNNNNNNGC 3 cut(s) 132, 141, 305
HpyF3I CTNAG 1 cut(s) 245
Kzo9I GATC 2 cut(s) 90, 223
LpnPI CCDG 8 cut(s) 30, 148, 232, 261, 285, 323, 335, 362
Lsp1109I GCAGC 1 cut(s) 61
MaeIII GTNAC 2 cut(s) 278, 326
MalI GATC 2 cut(s) 92, 225
MboI GATC 2 cut(s) 90, 223
MhlI GDGCHC 1 cut(s) 356
MluCI AATT 1 cut(s) 166
MlyI GAGTC 2 cut(s) 235, 281
MnlI CCTC 3 cut(s) 54, 64, 187
MseI TTAA 3 cut(s) 119, 138, 405
MspR9I CCNGG 1 cut(s) 350
MvaI CCWGG 1 cut(s) 350
MwoI GCNNNNNNNGC 3 cut(s) 132, 141, 305
NdeI CATATG 1 cut(s) 28
NdeII GATC 2 cut(s) 90, 223
NmeAIII GCCGAG 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 326
PfeI GAWTC 1 cut(s) 367
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 2 cut(s) 235, 280
PpsI GAGTC 2 cut(s) 235, 280
Psp6I CCWGG 1 cut(s) 348
PspFI CCCAGC 1 cut(s) 299
PspGI CCWGG 1 cut(s) 348
PspPI GGNCC 1 cut(s) 376
PstNI CAGNNNCTG 1 cut(s) 53
SaqAI TTAA 3 cut(s) 119, 138, 405
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 90, 223
Sau96I GGNCC 1 cut(s) 376
SchI GAGTC 2 cut(s) 235, 281
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 1 cut(s) 356
SetI ASST 5 cut(s) 55, 146, 179, 325, 381
SinI GGWCC 1 cut(s) 376
Sse9I AATT 1 cut(s) 166
StyD4I CCNGG 1 cut(s) 348
TaaI ACNGT 1 cut(s) 284
TaqI TCGA 1 cut(s) 93
TasI AATT 1 cut(s) 166
TfiI GAWTC 1 cut(s) 367
Tru1I TTAA 3 cut(s) 119, 138, 405
Tru9I TTAA 3 cut(s) 119, 138, 405
TscAI CASTG 4 cut(s) 39, 192, 295, 361
TseFI GTSAC 1 cut(s) 326
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 1 cut(s) 120
TspRI CASTG 4 cut(s) 39, 192, 295, 361
VpaK11BI GGWCC 1 cut(s) 376
XcmI CCANNNNNNNNNTGG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.