Rmu_co8046896.1_g000001

DWNN domain, A CCHC-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8046896.1
OG0001377
Physical Location & Seq
Reverse (-)
1 .. 499
499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8046896.1_g000001.1.cds

Sequence Viewer

Length: 301 bp
atggtggagaacattgaacccgaaaggactagctttctgggagctggttcctctgtgaatcctgagccagactgggatgatcttgggggtgatttgtacgaaattcctgaagttttgccagtgccgcctagttatgcggttccggatattccaccatcaaataaagctgatgaagatagcaagcttaaggctttaatcgacactccagtattagactggcaacatcaaggcgctgacggctatggtcctggtagaggttttggccgtggtatgaatggaagaatgggtggacgtggttttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

100

Amino Acids

10.73

Weight (kDa)

4.28

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 142
AciI CCGC 2 cut(s) 125, 137
AcoI YGGCCR 1 cut(s) 262
AcsI RAATTY 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 1 cut(s) 254
AflII CTTAAG 1 cut(s) 185
AgsI TTSAA 1 cut(s) 17
AjiI CACGTC 1 cut(s) 293
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 4 cut(s) 33, 44, 167, 184
AluI AGCT 4 cut(s) 33, 44, 167, 184
Aor13HI TCCGGA 1 cut(s) 142
AoxI GGCC 1 cut(s) 262
ApoI RAATTY 1 cut(s) 102
AspLEI GCGC 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 101
AvaII GGWCC 1 cut(s) 245
BccI CCATC 1 cut(s) 163
BceAI ACGGC 2 cut(s) 249, 253
BciT130I CCWGG 1 cut(s) 249
BfaI CTAG 2 cut(s) 30, 129
BfoI RGCGCY 1 cut(s) 234
BfrI CTTAAG 1 cut(s) 185
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 245
BmgBI CACGTC 1 cut(s) 293
BmgT120I GGNCC 1 cut(s) 245
BmiI GGNNCC 2 cut(s) 49, 141
BmrFI CCNGG 1 cut(s) 249
BmrI ACTGGG 1 cut(s) 82
BmuI ACTGGG 1 cut(s) 82
BpmI CTGGAG 1 cut(s) 189
Bpu10I CCTNAGC 1 cut(s) 63
BsaJI CCNNGG 1 cut(s) 265
BsaWI WCCGGW 1 cut(s) 142
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse1I ACTGG 4 cut(s) 77, 119, 206, 221
BseAI TCCGGA 1 cut(s) 142
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 4 cut(s) 77, 119, 206, 221
BshFI GGCC 1 cut(s) 264
BsiSI CCGG 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 254
BsnI GGCC 1 cut(s) 264
Bsp13I TCCGGA 1 cut(s) 142
Bsp143I GATC 1 cut(s) 79
BspACI CCGC 2 cut(s) 125, 137
BspANI GGCC 1 cut(s) 264
BspCNI CTCAG 1 cut(s) 55
BspEI TCCGGA 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 49, 141
BspTI CTTAAG 1 cut(s) 185
BsrI ACTGG 4 cut(s) 77, 119, 206, 221
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 1 cut(s) 79
Bst2UI CCWGG 1 cut(s) 249
BstAFI CTTAAG 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 1 cut(s) 63
BstDSI CCRYGG 1 cut(s) 265
BstENI CCTNNNNNAGG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 1 cut(s) 233
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstMWI GCNNNNNNNGC 2 cut(s) 124, 237
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BsuRI GGCC 1 cut(s) 264
BtgI CCRYGG 1 cut(s) 265
BtrI CACGTC 1 cut(s) 293
BtsCI GGATG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 182
CfoI GCGC 1 cut(s) 233
Cfr13I GGNCC 1 cut(s) 245
Csp6I GTAC 1 cut(s) 97
CviJI RGCY 8 cut(s) 33, 44, 67, 167, 184, 191, 240, 264
CviKI_1 RGCY 8 cut(s) 33, 44, 67, 167, 184, 191, 240, 264
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 1 cut(s) 63
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
EaeI YGGCCR 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 245
Eco57I CTGAAG 1 cut(s) 129
EcoNI CCTNNNNNAGG 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 247
FaiI YATR 3 cut(s) 135, 243, 272
Fnu4HI GCNGC 1 cut(s) 125
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 125
FspBI CTAG 2 cut(s) 30, 129
GlaI GCGC 1 cut(s) 232
GluI GCNGC 1 cut(s) 125
GsuI CTGGAG 1 cut(s) 189
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 1 cut(s) 264
HapII CCGG 1 cut(s) 143
HhaI GCGC 1 cut(s) 233
Hin6I GCGC 1 cut(s) 231
HinP1I GCGC 1 cut(s) 231
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 1 cut(s) 58
HpaII CCGG 1 cut(s) 143
HphI GGTGA 1 cut(s) 101
Hpy166II GTNNAC 1 cut(s) 290
Hpy188III TCNNGA 3 cut(s) 62, 107, 143
Hpy8I GTNNAC 1 cut(s) 290
HpyCH4IV ACGT 1 cut(s) 292
HpyF10VI GCNNNNNNNGC 2 cut(s) 124, 237
HpyF3I CTNAG 1 cut(s) 63
HpySE526I ACGT 1 cut(s) 292
HspAI GCGC 1 cut(s) 231
Kpn2I TCCGGA 1 cut(s) 142
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 1 cut(s) 41
MaeI CTAG 2 cut(s) 30, 129
MaeII ACGT 1 cut(s) 292
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 2 cut(s) 185, 291
MluCI AATT 1 cut(s) 102
MnlI CCTC 2 cut(s) 61, 248
MroI TCCGGA 1 cut(s) 142
MseI TTAA 2 cut(s) 186, 194
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 1 cut(s) 143
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 2 cut(s) 124, 237
NdeII GATC 1 cut(s) 79
NlaIV GGNNCC 2 cut(s) 49, 141
PfeI GAWTC 1 cut(s) 58
PkrI GCNGC 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 2 cut(s) 49, 141
PspPI GGNCC 1 cut(s) 245
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
SaqAI TTAA 2 cut(s) 186, 194
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 249
SetI ASST 6 cut(s) 35, 46, 169, 186, 259, 295
SinI GGWCC 1 cut(s) 245
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 1 cut(s) 102
SsiI CCGC 2 cut(s) 125, 137
SspMI CTAG 2 cut(s) 30, 129
StyD4I CCNGG 1 cut(s) 247
TaiI ACGT 1 cut(s) 295
TaqI TCGA 1 cut(s) 198
TasI AATT 1 cut(s) 102
TauI GCSGC 1 cut(s) 127
TfiI GAWTC 1 cut(s) 58
Tru1I TTAA 2 cut(s) 186, 194
Tru9I TTAA 2 cut(s) 186, 194
TscAI CASTG 1 cut(s) 126
TspDTI ATGAA 2 cut(s) 186, 287
TspRI CASTG 1 cut(s) 126
Vha464I CTTAAG 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 245
XagI CCTNNNNNAGG 1 cut(s) 252
XapI RAATTY 1 cut(s) 102
XcmI CCANNNNNNNNNTGG 1 cut(s) 213
XspI CTAG 2 cut(s) 30, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.