Rh4DG038600

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001377
Physical Location & Seq
Reverse (-)
6299945 .. 6311448
11504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG038600.1

Sequence Viewer

Length: 738 bp
ATGTTTGAGCTTACCCATGTCCACAATAATGAAAAACCTGATGAACCGAATTCTAAAGCTATTGTCTTGATGAAGGACAAGATTGACAAGATGAAGACTACAAAGAGGGCATCCCAACTTCCAGAGGTTCTTAATGATTTTGAAATCAATGAAGTATATGCGTCTGTGCTTGGAAAAGAGACACGTGGAGGGGTGCGAGGATTTGGCATTGGAGCCATACCTGAACAAGTTCCTGGTCAGTATATTCAGCACTGCCCTACAAATGGTGATCCAAACTATGACATCAAAAGAGTGAAGCCACCCACTGGCATTCCCAAGTCCATGTTGATAGCAACCCCAGATGGCTCATATGCACTGCCGAGTGGTGCAGTAGCTGTATTGAGGCCAAATGAGGCTGCTTTTGAGAAAGAGATCGAAGGTTTACCGTCTACGAGTTCTGTTGGTGATTTACCACCTGAGCTACACTGCCCCTTGTGCAAGGAAGTGATGAAAGATGCTGTTTTAACGAGCAAGTGTTGCTTTAAGAGCTTTTGTGATAAGTGTATCAGGAATTACATTACCTCAAAGTCAGTGTGTGTCTGTGGGGCTACAAATACACTTGCAGATGATCTACTGCCAAATAAGACTCTCAGGGATACCATCAATCGAATCTTGGAGTCTGGTAACAGTAGTACTGATAACGTTGGGAGTGCTTTCCAAGTTCAAGATATGGAGTCTGCACGCTGCCCACAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

245

Amino Acids

26.67

Weight (kDa)

5.87

Isoelectric Point (pI)

33.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 305
AccI GTMKAC 1 cut(s) 428
AclI AACGTT 1 cut(s) 681
AclWI GGATC 1 cut(s) 263
AcsI RAATTY 1 cut(s) 49
AcvI CACGTG 1 cut(s) 185
AfaI GTAC 1 cut(s) 673
AfiI CCNNNNNNNGG 2 cut(s) 263, 305
AflIII ACRYGT 1 cut(s) 182
AgsI TTSAA 2 cut(s) 143, 704
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 5 cut(s) 10, 59, 374, 460, 528
AluI AGCT 5 cut(s) 10, 59, 374, 460, 528
Alw26I GTCTC 1 cut(s) 173
AlwI GGATC 1 cut(s) 263
AlwNI CAGNNNCTG 1 cut(s) 374
AoxI GGCC 1 cut(s) 383
ApeKI GCWGC 2 cut(s) 395, 723
ApoI RAATTY 1 cut(s) 49
Asp700I GAANNNNTTC 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 278, 455
BbrPI CACGTG 1 cut(s) 185
BbsI GAAGAC 1 cut(s) 101
BbvI GCAGC 2 cut(s) 382, 710
BccI CCATC 2 cut(s) 335, 647
BciT130I CCWGG 1 cut(s) 234
BciVI GTATCC 1 cut(s) 628
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 1 cut(s) 736
BfuI GTATCC 1 cut(s) 628
BisI GCNGC 2 cut(s) 396, 724
BlsI GCNGC 2 cut(s) 397, 725
BmcAI AGTACT 1 cut(s) 673
Bme1390I CCNGG 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 2 cut(s) 119, 484
BpiI GAAGAC 1 cut(s) 101
Bpu10I CCTNAGC 1 cut(s) 456
BsaAI YACGTR 1 cut(s) 185
Bsc4I CCNNNNNNNGG 2 cut(s) 263, 305
Bse1I ACTGG 1 cut(s) 310
BseBI CCWGG 1 cut(s) 234
BseGI GGATG 1 cut(s) 110
BseLI CCNNNNNNNGG 2 cut(s) 263, 305
BseMII CTCAG 2 cut(s) 447, 643
BseNI ACTGG 1 cut(s) 310
BseXI GCAGC 2 cut(s) 382, 710
BsgI GTGCAG 2 cut(s) 387, 702
BshFI GGCC 1 cut(s) 385
BslI CCNNNNNNNGG 2 cut(s) 263, 305
BsmAI GTCTC 1 cut(s) 173
BsmI GAATGC 1 cut(s) 309
BsnI GGCC 1 cut(s) 385
Bsp143I GATC 3 cut(s) 268, 411, 607
BspANI GGCC 1 cut(s) 385
BspCNI CTCAG 2 cut(s) 448, 642
BspLI GGNNCC 1 cut(s) 214
BspPI GGATC 1 cut(s) 263
BsrI ACTGG 1 cut(s) 310
BssMI GATC 3 cut(s) 268, 411, 607
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 2 cut(s) 426, 668
BstAPI GCANNNNNTGC 1 cut(s) 516
BstBAI YACGTR 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 721
BstDEI CTNAG 2 cut(s) 456, 629
BstF5I GGATG 1 cut(s) 110
BstKTI GATC 3 cut(s) 271, 414, 610
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 3 cut(s) 268, 411, 607
BstMWI GCNNNNNNNGC 3 cut(s) 474, 516, 525
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 1 cut(s) 232
BstV1I GCAGC 2 cut(s) 382, 710
BstV2I GAAGAC 1 cut(s) 101
BsuI GTATCC 1 cut(s) 628
BsuRI GGCC 1 cut(s) 385
BtsCI GGATG 1 cut(s) 110
BtsI GCAGTG 3 cut(s) 250, 353, 463
BtsIMutI CAGTG 5 cut(s) 250, 303, 353, 463, 576
Cac8I GCNNGC 1 cut(s) 721
CaiI CAGNNNCTG 1 cut(s) 374
CseI GACGC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 672
CviAII CATG 2 cut(s) 17, 322
CviQI GTAC 1 cut(s) 672
DdeI CTNAG 2 cut(s) 456, 629
DpnI GATC 3 cut(s) 270, 413, 609
DpnII GATC 3 cut(s) 268, 411, 607
Eco72I CACGTG 1 cut(s) 185
EcoRI GAATTC 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 232
FaeI CATG 2 cut(s) 20, 325
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FatI CATG 2 cut(s) 16, 321
FauNDI CATATG 1 cut(s) 349
FblI GTMKAC 1 cut(s) 428
Fnu4HI GCNGC 2 cut(s) 396, 724
FokI GGATG 1 cut(s) 97
Fsp4HI GCNGC 2 cut(s) 396, 724
FspBI CTAG 1 cut(s) 736
GluI GCNGC 2 cut(s) 396, 724
HaeIII GGCC 1 cut(s) 385
HgaI GACGC 1 cut(s) 150
Hin1II CATG 2 cut(s) 20, 325
HinfI GANTC 4 cut(s) 625, 648, 656, 713
HphI GGTGA 2 cut(s) 278, 455
Hpy166II GTNNAC 3 cut(s) 22, 422, 429
Hpy188III TCNNGA 4 cut(s) 67, 122, 547, 704
Hpy8I GTNNAC 3 cut(s) 22, 422, 429
HpyAV CCTTC 2 cut(s) 67, 410
HpyCH4III ACNGT 2 cut(s) 426, 668
HpyCH4IV ACGT 2 cut(s) 184, 681
HpyCH4V TGCA 5 cut(s) 353, 368, 477, 602, 719
HpyF10VI GCNNNNNNNGC 3 cut(s) 474, 516, 525
HpyF3I CTNAG 2 cut(s) 456, 629
HpySE526I ACGT 2 cut(s) 184, 681
Hsp92II CATG 2 cut(s) 20, 325
Kzo9I GATC 3 cut(s) 268, 411, 607
LmnI GCTCC 1 cut(s) 212
Lsp1109I GCAGC 2 cut(s) 382, 710
LweI GCATC 2 cut(s) 119, 484
MaeI CTAG 1 cut(s) 736
MaeII ACGT 2 cut(s) 184, 681
MaeIII GTNAC 1 cut(s) 662
MalI GATC 3 cut(s) 270, 413, 609
MboI GATC 3 cut(s) 268, 411, 607
MboII GAAGA 1 cut(s) 106
MluCI AATT 2 cut(s) 49, 550
MlyI GAGTC 3 cut(s) 619, 665, 722
MnlI CCTC 7 cut(s) 99, 118, 182, 191, 375, 385, 571
MroXI GAANNNNTTC 1 cut(s) 228
MseI TTAA 3 cut(s) 132, 503, 522
MslI CAYNNNNRTG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 234
Mva1269I GAATGC 1 cut(s) 309
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 3 cut(s) 474, 516, 525
NdeI CATATG 1 cut(s) 349
NdeII GATC 3 cut(s) 268, 411, 607
NlaIII CATG 2 cut(s) 20, 325
NlaIV GGNNCC 1 cut(s) 214
NmeAIII GCCGAG 1 cut(s) 384
PctI GAATGC 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 228
PfeI GAWTC 1 cut(s) 648
PflMI CCANNNNNTGG 1 cut(s) 305
PkrI GCNGC 2 cut(s) 397, 725
PleI GAGTC 3 cut(s) 619, 664, 721
PmaCI CACGTG 1 cut(s) 185
PmlI CACGTG 1 cut(s) 185
PpsI GAGTC 3 cut(s) 619, 664, 721
Ppu21I YACGTR 1 cut(s) 185
Psp1406I AACGTT 1 cut(s) 681
Psp6I CCWGG 1 cut(s) 232
PspCI CACGTG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 214
PstNI CAGNNNCTG 1 cut(s) 374
RsaI GTAC 1 cut(s) 673
RsaNI GTAC 1 cut(s) 672
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 3 cut(s) 132, 503, 522
SatI GCNGC 2 cut(s) 396, 724
Sau3AI GATC 3 cut(s) 268, 411, 607
ScaI AGTACT 1 cut(s) 673
SchI GAGTC 3 cut(s) 619, 665, 722
ScrFI CCNGG 1 cut(s) 234
SfaNI GCATC 2 cut(s) 119, 484
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 2 cut(s) 49, 550
SspMI CTAG 1 cut(s) 736
StyD4I CCNGG 1 cut(s) 232
TaaI ACNGT 2 cut(s) 426, 668
TaiI ACGT 2 cut(s) 187, 684
TaqI TCGA 2 cut(s) 414, 646
TasI AATT 2 cut(s) 49, 550
TatI WGTACW 1 cut(s) 671
TfiI GAWTC 1 cut(s) 648
Tru1I TTAA 3 cut(s) 132, 503, 522
Tru9I TTAA 3 cut(s) 132, 503, 522
TscAI CASTG 5 cut(s) 257, 310, 360, 470, 576
TseI GCWGC 2 cut(s) 395, 723
TspDTI ATGAA 6 cut(s) 45, 57, 86, 107, 165, 503
TspRI CASTG 5 cut(s) 257, 310, 360, 470, 576
Van91I CCANNNNNTGG 1 cut(s) 305
XapI RAATTY 1 cut(s) 49
XmiI GTMKAC 1 cut(s) 428
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 1 cut(s) 736
ZrmI AGTACT 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.