Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001377

Physical Location & Seq

Genomic Coordinates Forward (+)

18737344 .. 18742423

Gene Structure 5080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0212300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGAGGGAAGCAGTAAGAGTGGCACGGTGGTGGTGGTGGCGGCCAATGAGAGAAAGCCAAGTGGCGGAATCCGGATTGGGAATCCGTTTACTTTGAAAGTGGGTCAAGTATTTACTGGCTTTGGCATCGGCTGCGGTGTTGGTATCGGCGTTGGCCGCCCCATTAATTTAGGTGCAGTACCAGTAGTCAATCAAGTCATGGGTGCTACAAGAGGTGCCACTGATGCTTTTTCTGGCGTTAGCAGACATGTAACTGACGCCTTGAGGAAGGTGGGAGCAAAGAACATAGAAGCTGGCATTGGATGTGGTGTTGGTCTTGGACATGGTTTTGGAGTTGGCCTTGCTCTGAAGCCAGGGATTTTGCAACAAATTCAATTTTTTGCTGTACAAACAATGACAAAAATGATGACAAAATTTGGAATTGCTCCCAATTCACCAATCCTTCAAGGTGCCATTCCAAGTTCATTGCAAAGTGGCATTGGCATTATGAATGATTCATCAAGCCAAAATTCAGTCGGAAATATCATGCAGATGGCAACAAAACCACCAGACTATGCAACTCAAGGCTTGCCTGGATATGGAAATAAGGGTACAGGTTCAACTTATGATAATTTTCCATCAACAAGCTCTCCAGTTGATACACCTTTTGGCAGTCGAACGGAGAAGGTTCTCAGCAGTTTTTTACAGAGTCCAGTTTTGAAGGGAGAGGAAAGTGAAGTGGCTGGACGCTTGAGGTCAGAGAATAAAATCCTTCAAATGGTATTGAAACACCAGCAAGTCATTGACGAGCTCACGGAGGAGAATGAGAAGCTTCGCCATATACTAATGGAAGACCTGAAAGTACCACCTAGCAAGCTGCAAGCACATTATACAAGTAAAATCAAATATCCATGTTCAGATTGCTTTGAATGTCGAAGAAAACAAAGGAGAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

311

Amino Acids

33.04

Weight (kDa)

9.59

Isoelectric Point (pI)

55.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17410 AT4G17410 AT4G17410 AT4G17410 AT4G17410 AT4G17410 AT5G47430 AT5G47430 AT5G47430 AT5G47430 AT5G47430 AT5G47430
fragaria_vesca	FvH4_5g19330 FvH4_5g19330 FvH4_5g19330 FvH4_5g19330 FvH4_5g19330 FvH4_5g19330 FvH4_5g19330 FvH4_5g19330
malus_domestica	MD04G1061900.v1.1 MD06G1055600.v1.1
prunus_persica	Prupe.5G066400_v2.0.a1 Prupe.5G066400_v2.0.a1 Prupe.5G066400_v2.0.a1
pyrus_communis	pycom04g05550 pycom06g04660
rosa_chinensis	RchiOBHm_Chr2g0120501 RchiOBHm_Chr7g0203801
rosa_laevigata	RLG00000002918 RLG00000003504 RLG00000036586
rosa_multiflora	Rmu_co8046896.1_g000001 Rmu_co8437399.1_g000001 Rmu_sc0000545.1_g000019
rosa_roxburghii	Rroxscaffold_1G00001780 Rroxscaffold_3G00229830 Rroxscaffold_3G00253510 Rroxscaffold_7G00188010
rosa_rugosa	Rorug07G0078900 Rorug07G0212300
rosa_samantha	Rh1DG081000 Rh2BG349200 Rh4DG038600 Rh4DG297200 Rh5DG111700 Rh6BG242200 Rh7AG208900 Rh7BG207500 Rh7BG417200 Rh7CG221000 Rh7DG215600
rosa_wichuraiana	Rw7G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	215, 449
AccIII	TCCGGA	1 cut(s)	72
AciI	CCGC	4 cut(s)	41, 66, 135, 157
AcoI	YGGCCR	2 cut(s)	42, 154
AcsI	RAATTY	3 cut(s)	369, 413, 508
AcuI	CTGAAG	1 cut(s)	368
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	4 cut(s)	180, 387, 592, 843
AfiI	CCNNNNNNNGG	3 cut(s)	65, 578, 757
AflIII	ACRYGT	1 cut(s)	247
AgsI	TTSAA	8 cut(s)	97, 374, 446, 600, 700, 755, 766, 908
AjnI	CCWGG	2 cut(s)	352, 571
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AleI	CACNNNNGTG	1 cut(s)	29
AluBI	AGCT	5 cut(s)	293, 627, 790, 811, 856
AluI	AGCT	5 cut(s)	293, 627, 790, 811, 856
Alw21I	GWGCWC	1 cut(s)	792
Aor13HI	TCCGGA	1 cut(s)	72
AoxI	GGCC	3 cut(s)	42, 154, 337
ApeKI	GCWGC	2 cut(s)	132, 856
ApoI	RAATTY	3 cut(s)	369, 413, 508
AseI	ATTAAT	1 cut(s)	165
AsuHPI	GGTGA	1 cut(s)	426
BanI	GGYRCC	2 cut(s)	215, 449
BanII	GRGCYC	1 cut(s)	792
BbsI	GAAGAC	1 cut(s)	837
Bbv12I	GWGCWC	1 cut(s)	792
BbvI	GCAGC	2 cut(s)	119, 843
BccI	CCATC	2 cut(s)	526, 625
BciT130I	CCWGG	2 cut(s)	354, 573
BfaI	CTAG	1 cut(s)	849
BisI	GCNGC	4 cut(s)	42, 133, 157, 857
BlsI	GCNGC	4 cut(s)	43, 134, 158, 858
Bme1390I	CCNGG	2 cut(s)	354, 573
BmiI	GGNNCC	2 cut(s)	217, 451
BmrFI	CCNGG	2 cut(s)	354, 573
BmsI	GCATC	2 cut(s)	135, 214
BpiI	GAAGAC	1 cut(s)	837
BpmI	CTGGAG	1 cut(s)	615
BpuEI	CTTGAG	3 cut(s)	283, 546, 751
BsaHI	GRCGYC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	353
BsaWI	WCCGGW	1 cut(s)	72
BsaXI	ACNNNNNCTCC	2 cut(s)	613, 643
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 578, 757
Bse1I	ACTGG	4 cut(s)	121, 182, 632, 692
Bse3DI	GCAATG	1 cut(s)	464
BseAI	TCCGGA	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	354, 573
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	1 cut(s)	308
BseLI	CCNNNNNNNGG	3 cut(s)	65, 578, 757
BseMI	GCAATG	1 cut(s)	464
BseMII	CTCAG	1 cut(s)	685
BseNI	ACTGG	4 cut(s)	121, 182, 632, 692
BseRI	GAGGAG	1 cut(s)	812
BseXI	GCAGC	2 cut(s)	119, 843
BsgI	GTGCAG	1 cut(s)	195
BshFI	GGCC	3 cut(s)	44, 156, 339
BshNI	GGYRCC	2 cut(s)	215, 449
BsiHKAI	GWGCWC	1 cut(s)	792
BsiSI	CCGG	1 cut(s)	73
BslI	CCNNNNNNNGG	3 cut(s)	65, 578, 757
BsnI	GGCC	3 cut(s)	44, 156, 339
Bsp1286I	GDGCHC	1 cut(s)	792
Bsp13I	TCCGGA	1 cut(s)	72
Bsp1407I	TGTACA	1 cut(s)	385
BspACI	CCGC	4 cut(s)	41, 66, 135, 157
BspANI	GGCC	3 cut(s)	44, 156, 339
BspCNI	CTCAG	1 cut(s)	684
BspEI	TCCGGA	1 cut(s)	72
BspLI	GGNNCC	2 cut(s)	217, 451
BspT107I	GGYRCC	2 cut(s)	215, 449
BsrDI	GCAATG	1 cut(s)	464
BsrGI	TGTACA	1 cut(s)	385
BsrI	ACTGG	4 cut(s)	121, 182, 632, 692
BssECI	CCNNGG	1 cut(s)	353
BssNI	GRCGYC	1 cut(s)	258
Bst2UI	CCWGG	2 cut(s)	354, 573
Bst4CI	ACNGT	1 cut(s)	28
BstACI	GRCGYC	1 cut(s)	258
BstAPI	GCANNNNNTGC	1 cut(s)	132
BstAUI	TGTACA	1 cut(s)	385
BstC8I	GCNNGC	4 cut(s)	295, 569, 854, 861
BstDEI	CTNAG	1 cut(s)	671
BstF5I	GGATG	1 cut(s)	308
BstMWI	GCNNNNNNNGC	3 cut(s)	132, 156, 224
BstNI	CCWGG	2 cut(s)	354, 573
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	352, 571
BstV1I	GCAGC	2 cut(s)	119, 843
BstV2I	GAAGAC	1 cut(s)	837
BsuRI	GGCC	3 cut(s)	44, 156, 339
BtsCI	GGATG	1 cut(s)	308
BtsIMutI	CAGTG	1 cut(s)	219
Cac8I	GCNNGC	4 cut(s)	295, 569, 854, 861
CseI	GACGC	2 cut(s)	266, 735
Csp6I	GTAC	4 cut(s)	179, 386, 591, 842
CviAII	CATG	5 cut(s)	199, 248, 323, 526, 891
CviQI	GTAC	4 cut(s)	179, 386, 591, 842
DdeI	CTNAG	1 cut(s)	671
EaeI	YGGCCR	2 cut(s)	42, 154
EciI	GGCGGA	1 cut(s)	81
Ecl136II	GAGCTC	1 cut(s)	790
Eco24I	GRGCYC	1 cut(s)	792
Eco53kI	GAGCTC	1 cut(s)	790
Eco57I	CTGAAG	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	790
EcoRII	CCWGG	2 cut(s)	352, 571
EcoT38I	GRGCYC	1 cut(s)	792
FaeI	CATG	5 cut(s)	202, 251, 326, 529, 894
FatI	CATG	5 cut(s)	198, 247, 322, 525, 890
Fnu4HI	GCNGC	4 cut(s)	42, 133, 157, 857
FokI	GGATG	1 cut(s)	315
FriOI	GRGCYC	1 cut(s)	792
Fsp4HI	GCNGC	4 cut(s)	42, 133, 157, 857
FspBI	CTAG	1 cut(s)	849
GluI	GCNGC	4 cut(s)	42, 133, 157, 857
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	3 cut(s)	44, 156, 339
HapII	CCGG	1 cut(s)	73
HgaI	GACGC	2 cut(s)	266, 735
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	5 cut(s)	202, 251, 326, 529, 894
HindIII	AAGCTT	1 cut(s)	809
HinfI	GANTC	4 cut(s)	69, 82, 494, 688
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	1 cut(s)	426
Hpy166II	GTNNAC	1 cut(s)	90
Hpy188I	TCNGA	4 cut(s)	348, 518, 739, 898
Hpy188III	TCNNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	90
HpyAV	CCTTC	5 cut(s)	262, 452, 658, 694, 761
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4V	TGCA	6 cut(s)	176, 364, 469, 529, 557, 859
HpyF10VI	GCNNNNNNNGC	3 cut(s)	132, 156, 224
HpyF3I	CTNAG	1 cut(s)	671
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	5 cut(s)	202, 251, 326, 529, 894
Kpn2I	TCCGGA	1 cut(s)	72
LmnI	GCTCC	2 cut(s)	275, 430
Lsp1109I	GCAGC	2 cut(s)	119, 843
LweI	GCATC	2 cut(s)	135, 214
MaeI	CTAG	1 cut(s)	849
MaeIII	GTNAC	1 cut(s)	250
MboII	GAAGA	2 cut(s)	842, 927
MhlI	GDGCHC	1 cut(s)	792
MluCI	AATT	8 cut(s)	166, 369, 374, 413, 420, 430, 508, 610
MlyI	GAGTC	1 cut(s)	697
MmeI	TCCRAC	1 cut(s)	496
MnlI	CCTC	5 cut(s)	206, 258, 700, 726, 790
MroI	TCCGGA	1 cut(s)	72
MseI	TTAA	1 cut(s)	165
MslI	CAYNNNNRTG	2 cut(s)	29, 530
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	2 cut(s)	354, 573
MvaI	CCWGG	2 cut(s)	354, 573
MwoI	GCNNNNNNNGC	3 cut(s)	132, 156, 224
NlaIII	CATG	5 cut(s)	202, 251, 326, 529, 894
NlaIV	GGNNCC	2 cut(s)	217, 451
NspI	RCATGY	1 cut(s)	251
OliI	CACNNNNGTG	1 cut(s)	29
PciI	ACATGT	1 cut(s)	247
PfeI	GAWTC	3 cut(s)	69, 82, 494
PkrI	GCNGC	4 cut(s)	43, 134, 158, 858
PleI	GAGTC	1 cut(s)	696
PpsI	GAGTC	1 cut(s)	696
PscI	ACATGT	1 cut(s)	247
PshBI	ATTAAT	1 cut(s)	165
Psp124BI	GAGCTC	1 cut(s)	792
Psp6I	CCWGG	2 cut(s)	352, 571
PspGI	CCWGG	2 cut(s)	352, 571
PspN4I	GGNNCC	2 cut(s)	217, 451
RsaI	GTAC	4 cut(s)	180, 387, 592, 843
RsaNI	GTAC	4 cut(s)	179, 386, 591, 842
RseI	CAYNNNNRTG	2 cut(s)	29, 530
SacI	GAGCTC	1 cut(s)	792
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	4 cut(s)	42, 133, 157, 857
SchI	GAGTC	1 cut(s)	697
ScrFI	CCNGG	2 cut(s)	354, 573
SduI	GDGCHC	1 cut(s)	792
SfaNI	GCATC	2 cut(s)	135, 214
SmiMI	CAYNNNNRTG	2 cut(s)	29, 530
SmlI	CTYRAG	3 cut(s)	262, 561, 730
SmoI	CTYRAG	3 cut(s)	262, 561, 730
Sse9I	AATT	8 cut(s)	166, 369, 374, 413, 420, 430, 508, 610
SsiI	CCGC	4 cut(s)	41, 66, 135, 157
SspMI	CTAG	1 cut(s)	849
SstI	GAGCTC	1 cut(s)	792
StyD4I	CCNGG	2 cut(s)	352, 571
TaaI	ACNGT	1 cut(s)	28
TaqI	TCGA	2 cut(s)	655, 913
TasI	AATT	8 cut(s)	166, 369, 374, 413, 420, 430, 508, 610
TatI	WGTACW	1 cut(s)	385
TauI	GCSGC	2 cut(s)	44, 159
TfiI	GAWTC	3 cut(s)	69, 82, 494
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TscAI	CASTG	1 cut(s)	226
TseI	GCWGC	2 cut(s)	132, 856
TspDTI	ATGAA	3 cut(s)	453, 486, 503
TspGWI	ACGGA	3 cut(s)	75, 674, 809
TspRI	CASTG	1 cut(s)	226
VspI	ATTAAT	1 cut(s)	165
XapI	RAATTY	3 cut(s)	369, 413, 508
XceI	RCATGY	1 cut(s)	251
XspI	CTAG	1 cut(s)	849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.