Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0001377

Physical Location & Seq

Genomic Coordinates Forward (+)

14404782 .. 14411959

Gene Structure 7178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00229830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGAGGCTCGCTTTTGAGAAAGAGATAGAAGGTTTACCGTCCACGCGTTCGTTGGTGATTTACCACCCTGAGCTACACTACCCCTCTTGCAAGGAAGTGATGAAAGATGCTGTTTTAACGAGCAAGTGTTGCTTTAAGAGCTTTTGTGATAAGTGTATCGGGAATTACATTACCTCAAAGTCGGTGTGTGTACGTGGGGCTACAAATACACTTGCAGATGATCTACTTGCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DWNN zf-CCHC_2

Protein Analysis

78

Amino Acids

8.72

Weight (kDa)

8.24

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001377)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17410 AT4G17410 AT4G17410 AT4G17410 AT4G17410 AT4G17410 AT5G47430 AT5G47430 AT5G47430 AT5G47430 AT5G47430 AT5G47430
fragaria_vesca	FvH4_5g19330 FvH4_5g19330 FvH4_5g19330 FvH4_5g19330 FvH4_5g19330 FvH4_5g19330 FvH4_5g19330 FvH4_5g19330
malus_domestica	MD04G1061900.v1.1 MD06G1055600.v1.1
prunus_persica	Prupe.5G066400_v2.0.a1 Prupe.5G066400_v2.0.a1 Prupe.5G066400_v2.0.a1
pyrus_communis	pycom04g05550 pycom06g04660
rosa_chinensis	RchiOBHm_Chr2g0120501 RchiOBHm_Chr7g0203801
rosa_laevigata	RLG00000002918 RLG00000003504 RLG00000036586
rosa_multiflora	Rmu_co8046896.1_g000001 Rmu_co8437399.1_g000001 Rmu_sc0000545.1_g000019
rosa_roxburghii	Rroxscaffold_1G00001780 Rroxscaffold_3G00229830 Rroxscaffold_3G00253510 Rroxscaffold_7G00188010
rosa_rugosa	Rorug07G0078900 Rorug07G0212300
rosa_samantha	Rh1DG081000 Rh2BG349200 Rh4DG038600 Rh4DG297200 Rh5DG111700 Rh6BG242200 Rh7AG208900 Rh7BG207500 Rh7BG417200 Rh7CG221000 Rh7DG215600
rosa_wichuraiana	Rw7G018190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	46
AfaI	GTAC	1 cut(s)	192
AflIII	ACRYGT	1 cut(s)	44
AluBI	AGCT	2 cut(s)	73, 141
AluI	AGCT	2 cut(s)	73, 141
AsuHPI	GGTGA	1 cut(s)	67
BmsI	GCATC	1 cut(s)	97
Bpu10I	CCTNAGC	1 cut(s)	69
BsaAI	YACGTR	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	60
Bsh1236I	CGCG	1 cut(s)	46
Bsp143I	GATC	1 cut(s)	220
BspCNI	CTCAG	1 cut(s)	61
BspFNI	CGCG	1 cut(s)	46
BssMI	GATC	1 cut(s)	220
Bst4CI	ACNGT	1 cut(s)	39
BstAPI	GCANNNNNTGC	1 cut(s)	129
BstBAI	YACGTR	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	69
BstFNI	CGCG	1 cut(s)	46
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 138
BstUI	CGCG	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	191
CviJI	RGCY	4 cut(s)	7, 73, 141, 200
CviKI_1	RGCY	4 cut(s)	7, 73, 141, 200
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
FalI	AAGNNNNNCTT	2 cut(s)	116, 148
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	3 cut(s)	35, 42, 191
Hpy188III	TCNNGA	1 cut(s)	160
Hpy8I	GTNNAC	3 cut(s)	35, 42, 191
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	2 cut(s)	90, 215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 138
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	1 cut(s)	193
Kzo9I	GATC	1 cut(s)	220
LpnPI	CCDG	1 cut(s)	81
LweI	GCATC	1 cut(s)	97
MaeII	ACGT	1 cut(s)	193
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MluCI	AATT	1 cut(s)	163
MluI	ACGCGT	1 cut(s)	44
MnlI	CCTC	2 cut(s)	94, 184
MseI	TTAA	2 cut(s)	116, 135
MvnI	CGCG	1 cut(s)	46
MwoI	GCNNNNNNNGC	2 cut(s)	129, 138
NdeII	GATC	1 cut(s)	220
Ppu21I	YACGTR	1 cut(s)	194
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	116, 135
Sau3AI	GATC	1 cut(s)	220
SetI	ASST	5 cut(s)	34, 75, 143, 176, 196
SfaNI	GCATC	1 cut(s)	97
Sse9I	AATT	1 cut(s)	163
TaaI	ACNGT	1 cut(s)	39
TaiI	ACGT	1 cut(s)	196
TasI	AATT	1 cut(s)	163
Tru1I	TTAA	2 cut(s)	116, 135
Tru9I	TTAA	2 cut(s)	116, 135
TspDTI	ATGAA	1 cut(s)	116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.