RLG00000003504

DWNN domain, A CCHC-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001377
Physical Location & Seq
Forward (+)
49351004 .. 49356819
5816 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003504

Sequence Viewer

Length: 2670 bp
ATGGCGGTGTACTATAAATTTAAGAGTGCAAGAGATTATGATTCTATTGCTATGGACGGTCCCTTCATCTCAGTTGGTATACTCAAAGAAAAAATATTTGAATCCAAGCATTTAGGGAGGGGTACTGATTTCGACCTTGTGGTCACCAATGCCCAGACCAATGAAGAGTATCTTGATGAAGCAACGTTGATTCCAAAAAATACCTCAGTTTTAATTCGCCGTGTACCTGGACGCCCTCGCATGCCCATTGTTACTGATTCAGAGGATAAAGTAGAAGATATGGTGGAGAACATTGAACCCGAAAGGACTAGCTTTCTGGGAGCTGGTTCCTCTGTGAATCCTGAGCCAGACTGGGATGATCTTGGGGGTGATTTGTATGAAATTCCTGAAGTTTTGCCAGTTCAGCCGAGTTATGCGGTTCCGGATATTCCACCATCAAATAAAGCTGATGAAGATAGCAAGCTTAAGGCTTTAATCGACACTCCAGTATTAGACTGGCAACATCAAGGCGCTGACGGCTATGGTCCTGGTAGAGGTTTTGGCCGTGGTATGAATGGAAGAATGGGTGGACGTGGTTTTGGTCGAACAGGAGTGTTTGAGAAAAAAACACCTCCACAGGGCTATATATGTCACAGGTGTAAGGTACCTGGTCATTATATTCAGCACTGCCCTACAAATGGTGATCCAAACTATGACATCAAAAGAGTGAAGCCACCCACTGGCATTCCCAAGTCCATGTTGATAGCAACCCCAGATGGCTCATATGCACTGCCGAGTGGTGCAGTAGCTGTATTGAGGCCGAATGAGGCTGCTTTTGAGAAAGAGATCGAAGGTTTACCGTCTACGCGTTCTGTTGGTGATTTACCACCTGAGCTACACTGCCCCTTGTGCAAGGAAGTGATGAAAGATGCTGTTTTAACGAGCAAGTGTTGCTTTAAGAGCTTTTGTGATAAGTGTATCAGGAATTACATTACCTCAAAGTCAGTGTGTGTCTGTGGGGCTACAAATACACTTGCAGATGATCTACTGCCAAATAAGACTCTCAGGGATACCATCAATCGAATCTTGGAGTCTGGTAACAGTAGTACTGATAACGCTGGGAGTGCTTTCCAAGTTCAAGATATGGAGTCTGCACGCTGCCCACAACCCAAGATTCCTTCCCCTACTTTATCTGCTGCATCAAAGGGAGAAAATAAGCCTTTACCTTTGCATGAAGAAGCTCTGAAGACACAGGAGACCGTAGATGAGGTAAAACCTGTTCTTGCCCCACAGCAGATGTTAGAGAATGTGAGGAATACAAAAGTAGCCGATGCGTCTGAAGCTACCCATGAGTCAATGAGTGTAAAGGAACCTGCATCCCAAGGGAGTGCTCCCCTCGTTGATGAAGAAGTGCAGCAGAGGCTGGCCTCTGTGGAGGCAGGAAAGAAAAGGAAAAAGAAGAAAGTTCGCATGCCTGCAAATGAAATGCAATGGAAGACACCTCAAGACCTTGCAGCTGAAAACTACATGATGCATATGGGACCCTCTGCTTATAATCCATACTGGAATGGCATGCAACCTGGCATGGGCATGGATGGATATATGCCACCATATGGTGCTCCTATGCCGTATATGGGGTATGGACTAGGTCCTATGGACATGCCATTTGGGGGTCCTTTCCCACAGGACTCATTTGGTGGTCAAGGTTATATGATGCCTATGGTTCCACCTCAGAGGGATCTTGCGGACTTTGGTATGGGTATGGGAATGAATGGAATGAATGTTGGACCTCCTCCTATCATGAGCAGAGAGGAATTTGAGGCTCGGAAAGCTGATTTGAGGAGGAAGCGTGAAAATGAGAGACGGGGCCAAAGGGAGTTCTCCAAAGATCGGGAATATGGAAGGGATGGGAGTGGTGATGGCGATGTGCCTCCAATGAAGTCCAAATCAAAGTCGTCTCTAGCCCGATCTCCAAGCCCAGACTACAGGGATCGCGATCACCATCGCCACCACCGATACGAGAGGTCCTCTCCAGAACCCAGAGACCGAGACCGAAGACCCTCACGTGACCTCATCGAGCCTCTCCCGCCACCGCGGCCCCCTAAGAGAAAATCCGAGCACCACCACGACCGCGACCGCGACCGAGAGCCCCAGCGCGAAAGCGCCAAGGACTACGACTACTACGACGACGAGAAGCCCCGCCAGAAACGTCACCGTTCCGAGTCTTCCTCTTCGAAACCTGCCGCCACCGAAACTGCACCACCCTCCAAGCCCAGCTCTGCAAAGCTCGCTGCTGAAACTGCGTCAGCCAAGAGCAAGGCCAGCGTGTTCTCGAGGATTAGCTTCCCTGAAGGGGAAGCGAACAAGAAGAGGAAGAGCTCTCCTACCGCGAAGGAGGTGGCGGGTGGTTCGAAAGAGCTGGCGAATGGCTTCCACGACCATGAGTATAGCAAGTCCACTAAGGTTGCCACTGCTGCTGCGGCTGTGAGTAGTAGCAGGAAGGCTACTAGTGCTGTGAGTTCTCCTGCTGTGGACTATGAGTCCAGCGACGACGATAGACACTTTAAGAGGAAGAAGAAGTCTTCAAGGTACGCAGAGGCTTCGCCACCGGCGGTGCAGCAGGAGGAGGAGCCGTCGAGGCACTCTAGAGGTTCCAGGGATCGAGAGCGGGAGCATAGGCGGCAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

890

Amino Acids

98.62

Weight (kDa)

8.44

Isoelectric Point (pI)

56.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DWNN PF08783 3 - 76 3.4e-31 DWNN domain
zf-CCHC_2 PF13696 205 - 225 5e-09 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1533
AasI GACNNNNNNGTC 1 cut(s) 140
Acc36I ACCTGC 2 cut(s) 1360, 2227
Acc65I GGTACC 1 cut(s) 643
AccB1I GGYRCC 1 cut(s) 643
AccB7I CCANNNNNTGG 2 cut(s) 719, 1592
AccBSI CCGCTC 1 cut(s) 2647
AccI GTMKAC 2 cut(s) 79, 842
AccII CGCG 7 cut(s) 847, 1974, 2074, 2112, 2118, 2136, 2369
AccIII TCCGGA 1 cut(s) 421
AclI AACGTT 1 cut(s) 185
AclWI GGATC 4 cut(s) 677, 1725, 1977, 2646
AcoI YGGCCR 1 cut(s) 541
AcsI RAATTY 3 cut(s) 17, 381, 1793
AcuI CTGAAG 4 cut(s) 408, 1244, 1338, 2349
AcvI CACGTG 1 cut(s) 2045
AcyI GRCGYC 1 cut(s) 232
AfaI GTAC 6 cut(s) 11, 124, 225, 645, 1087, 2570
AflII CTTAAG 1 cut(s) 464
AflIII ACRYGT 1 cut(s) 845
AgsI TTSAA 4 cut(s) 101, 296, 1118, 2565
AhdI GACNNNNNGTC 1 cut(s) 2518
AhlI ACTAGT 1 cut(s) 2486
AjiI CACGTC 1 cut(s) 572
AjnI CCWGG 5 cut(s) 226, 526, 646, 1558, 2633
Alw21I GWGCWC 4 cut(s) 1372, 1600, 2100, 2360
Alw26I GTCTC 5 cut(s) 1229, 1834, 1941, 2016, 2022
AlwI GGATC 4 cut(s) 677, 1725, 1977, 2646
AlwNI CAGNNNCTG 2 cut(s) 788, 1402
Ama87I CYCGRG 1 cut(s) 2311
Aor13HI TCCGGA 1 cut(s) 421
AoxI GGCC 6 cut(s) 541, 797, 1404, 1846, 2075, 2298
ApeKI GCWGC 9 cut(s) 809, 1137, 1175, 1393, 1493, 2270, 2453, 2456, 2596
ApoI RAATTY 3 cut(s) 17, 381, 1793
ArsI GACNNNNNNTTYG 2 cut(s) 1628, 1660
Asp700I GAANNNNTTC 1 cut(s) 2408
Asp718I GGTACC 1 cut(s) 643
AspLEI GCGC 3 cut(s) 512, 2136, 2144
AspS9I GGNCC 9 cut(s) 59, 524, 1520, 1628, 1652, 1766, 1846, 2004, 2076
AsuHPI GGTGA 7 cut(s) 136, 380, 692, 869, 1907, 1970, 2183
AsuII TTCGAA 2 cut(s) 2213, 2390
AvaI CYCGRG 1 cut(s) 2311
AvaII GGWCC 7 cut(s) 59, 524, 1520, 1628, 1652, 1766, 2004
BanI GGYRCC 1 cut(s) 643
BanII GRGCYC 2 cut(s) 2130, 2360
BbrPI CACGTG 1 cut(s) 2045
BbsI GAAGAC 5 cut(s) 1232, 1481, 2041, 2196, 2553
Bbv12I GWGCWC 4 cut(s) 1372, 1600, 2100, 2360
BbvI GCAGC 9 cut(s) 796, 1124, 1162, 1405, 1505, 2257, 2440, 2443, 2608
BccI CCATC 7 cut(s) 442, 749, 1061, 1568, 1880, 1892, 1989
BceAI ACGGC 5 cut(s) 204, 528, 532, 1591, 2596
BcgI CGANNNNNNTGC 2 cut(s) 2562, 2596
BciT130I CCWGG 5 cut(s) 228, 528, 648, 1560, 2635
BciVI GTATCC 1 cut(s) 1042
BcoDI GTCTC 5 cut(s) 1229, 1834, 1941, 2016, 2022
BcuI ACTAGT 1 cut(s) 2486
BfaI CTAG 5 cut(s) 309, 1625, 1940, 2487, 2625
BfmI CTRYAG 1 cut(s) 1963
BfoI RGCGCY 2 cut(s) 513, 2145
BfrI CTTAAG 1 cut(s) 464
BfuAI ACCTGC 2 cut(s) 1360, 2227
BfuI GTATCC 1 cut(s) 1042
BglI GCCNNNNNGGC 2 cut(s) 2074, 2617
BmcAI AGTACT 1 cut(s) 1087
Bme1390I CCNGG 5 cut(s) 228, 528, 648, 1560, 2635
Bme18I GGWCC 7 cut(s) 59, 524, 1520, 1628, 1652, 1766, 2004
BmeRI GACNNNNNGTC 1 cut(s) 2518
BmeT110I CYCGRG 1 cut(s) 2311
BmgBI CACGTC 1 cut(s) 572
BmgT120I GGNCC 9 cut(s) 59, 524, 1520, 1628, 1652, 1766, 1846, 2004, 2076
BmrFI CCNGG 5 cut(s) 228, 528, 648, 1560, 2635
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 6 cut(s) 898, 1187, 1300, 1364, 1500, 1683
BmuI ACTGGG 1 cut(s) 361
BpiI GAAGAC 5 cut(s) 1232, 1481, 2041, 2196, 2553
BplI GAGNNNNNCTC 6 cut(s) 1991, 2023, 1993, 2025, 2192, 2224
BpmI CTGGAG 2 cut(s) 468, 1995
Bpu10I CCTNAGC 2 cut(s) 342, 870
Bpu14I TTCGAA 2 cut(s) 2213, 2390
BpuEI CTTGAG 1 cut(s) 1467
BsaAI YACGTR 1 cut(s) 2045
BsaBI GATNNNNATC 2 cut(s) 1974, 1980
BsaHI GRCGYC 1 cut(s) 232
BsaI GGTCTC 3 cut(s) 1229, 2016, 2022
BsaJI CCNNGG 5 cut(s) 544, 1360, 2072, 2145, 2634
BsaWI WCCGGW 1 cut(s) 421
BsaXI ACNNNNNCTCC 4 cut(s) 1813, 1843, 2597, 2627
Bse118I RCCGGY 1 cut(s) 2587
Bse1I ACTGG 6 cut(s) 356, 398, 485, 500, 724, 1547
Bse3DI GCAATG 1 cut(s) 1475
Bse8I GATNNNNATC 2 cut(s) 1974, 1980
BseAI TCCGGA 1 cut(s) 421
BseBI CCWGG 5 cut(s) 228, 528, 648, 1560, 2635
BseDI CCNNGG 5 cut(s) 544, 1360, 2072, 2145, 2634
BseGI GGATG 4 cut(s) 361, 1355, 1579, 1891
BseJI GATNNNNATC 2 cut(s) 1974, 1980
BseMI GCAATG 1 cut(s) 1475
BseMII CTCAG 6 cut(s) 84, 219, 333, 861, 1057, 1724
BseNI ACTGG 6 cut(s) 356, 398, 485, 500, 724, 1547
BseRI GAGGAG 4 cut(s) 1761, 1834, 2618, 2621
BseXI GCAGC 9 cut(s) 796, 1124, 1162, 1405, 1505, 2257, 2440, 2443, 2608
BseYI CCCAGC 3 cut(s) 1097, 2130, 2252
BsgI GTGCAG 5 cut(s) 801, 1116, 1412, 2220, 2615
Bsh1236I CGCG 7 cut(s) 847, 1974, 2074, 2112, 2118, 2136, 2369
Bsh1285I CGRYCG 3 cut(s) 2110, 2116, 2122
BshFI GGCC 6 cut(s) 543, 799, 1406, 1848, 2077, 2300
BshNI GGYRCC 1 cut(s) 643
BsiEI CGRYCG 3 cut(s) 2110, 2116, 2122
BsiHKAI GWGCWC 4 cut(s) 1372, 1600, 2100, 2360
BsiHKCI CYCGRG 1 cut(s) 2311
BsiSI CCGG 2 cut(s) 422, 2588
BslFI GGGAC 2 cut(s) 45, 1533
BsmAI GTCTC 5 cut(s) 1229, 1834, 1941, 2016, 2022
BsmBI CGTCTC 2 cut(s) 1834, 1941
BsmFI GGGAC 2 cut(s) 45, 1533
BsmI GAATGC 1 cut(s) 723
BsnI GGCC 6 cut(s) 543, 799, 1406, 1848, 2077, 2300
Bso31I GGTCTC 3 cut(s) 1229, 2016, 2022
BsoBI CYCGRG 1 cut(s) 2311
Bsp119I TTCGAA 2 cut(s) 2213, 2390
Bsp1286I GDGCHC 5 cut(s) 1372, 1600, 2100, 2130, 2360
Bsp13I TCCGGA 1 cut(s) 421
Bsp68I TCGCGA 1 cut(s) 1974
BspANI GGCC 6 cut(s) 543, 799, 1406, 1848, 2077, 2300
BspCNI CTCAG 6 cut(s) 83, 218, 334, 862, 1056, 1723
BspEI TCCGGA 1 cut(s) 421
BspFNI CGCG 7 cut(s) 847, 1974, 2074, 2112, 2118, 2136, 2369
BspHI TCATGA 1 cut(s) 1779
BspMI ACCTGC 2 cut(s) 1360, 2227
BspPI GGATC 4 cut(s) 677, 1725, 1977, 2646
BspQI GCTCTTC 1 cut(s) 2348
BspT104I TTCGAA 2 cut(s) 2213, 2390
BspT107I GGYRCC 1 cut(s) 643
BspTI CTTAAG 1 cut(s) 464
BspTNI GGTCTC 3 cut(s) 1229, 2016, 2022
BsrBI CCGCTC 1 cut(s) 2647
BsrDI GCAATG 1 cut(s) 1475
BsrFI RCCGGY 1 cut(s) 2587
BsrI ACTGG 6 cut(s) 356, 398, 485, 500, 724, 1547
BssAI RCCGGY 1 cut(s) 2587
BssECI CCNNGG 5 cut(s) 544, 1360, 2072, 2145, 2634
BssNAI GTATAC 1 cut(s) 80
BssNI GRCGYC 1 cut(s) 232
BssT1I CCWWGG 2 cut(s) 1360, 2145
Bst1107I GTATAC 1 cut(s) 80
Bst2UI CCWGG 5 cut(s) 228, 528, 648, 1560, 2635
Bst4CI ACNGT 5 cut(s) 59, 840, 1082, 1240, 2195
Bst6I CTCTTC 4 cut(s) 159, 2215, 2342, 2348
BstACI GRCGYC 1 cut(s) 232
BstAFI CTTAAG 1 cut(s) 464
BstAPI GCANNNNNTGC 1 cut(s) 930
BstBAI YACGTR 1 cut(s) 2045
BstBI TTCGAA 2 cut(s) 2213, 2390
BstDEI CTNAG 8 cut(s) 70, 205, 342, 870, 1043, 1710, 2082, 2439
BstDSI CCRYGG 2 cut(s) 544, 2072
BstEII GGTNACC 1 cut(s) 142
BstENI CCTNNNNNAGG 1 cut(s) 531
BstF5I GGATG 4 cut(s) 361, 1355, 1579, 1891
BstFNI CGCG 7 cut(s) 847, 1974, 2074, 2112, 2118, 2136, 2369
BstH2I RGCGCY 2 cut(s) 513, 2145
BstHHI GCGC 3 cut(s) 512, 2136, 2144
BstMAI GTCTC 5 cut(s) 1229, 1834, 1941, 2016, 2022
BstMCI CGRYCG 3 cut(s) 2110, 2116, 2122
BstNI CCWGG 5 cut(s) 228, 528, 648, 1560, 2635
BstNSI RCATGY 4 cut(s) 244, 1453, 1555, 1642
BstPI GGTNACC 1 cut(s) 142
BstSCI CCNGG 5 cut(s) 226, 526, 646, 1558, 2633
BstSFI CTRYAG 1 cut(s) 1963
BstUI CGCG 7 cut(s) 847, 1974, 2074, 2112, 2118, 2136, 2369
BstV1I GCAGC 9 cut(s) 796, 1124, 1162, 1405, 1505, 2257, 2440, 2443, 2608
BstV2I GAAGAC 5 cut(s) 1232, 1481, 2041, 2196, 2553
BstX2I RGATCY 1 cut(s) 1717
BstYI RGATCY 1 cut(s) 1717
BstZ17I GTATAC 1 cut(s) 80
BsuI GTATCC 1 cut(s) 1042
BsuRI GGCC 6 cut(s) 543, 799, 1406, 1848, 2077, 2300
BtgI CCRYGG 2 cut(s) 544, 2072
BtgZI GCGATG 2 cut(s) 1917, 1967
BtrI CACGTC 1 cut(s) 572
BtsCI GGATG 4 cut(s) 361, 1355, 1579, 1891
BtsI GCAGTG 4 cut(s) 664, 767, 877, 2448
BtsIMutI CAGTG 6 cut(s) 664, 717, 767, 877, 990, 2448
BtuMI TCGCGA 1 cut(s) 1974
BveI ACCTGC 2 cut(s) 1360, 2227
CaiI CAGNNNCTG 2 cut(s) 788, 1402
CciI TCATGA 1 cut(s) 1779
CfoI GCGC 3 cut(s) 512, 2136, 2144
Cfr10I RCCGGY 1 cut(s) 2587
Cfr13I GGNCC 9 cut(s) 59, 524, 1520, 1628, 1652, 1766, 1846, 2004, 2076
Cfr42I CCGCGG 1 cut(s) 2075
CseI GACGC 3 cut(s) 240, 1302, 2271
CsiI ACCWGGT 1 cut(s) 646
Csp6I GTAC 6 cut(s) 10, 123, 224, 644, 1086, 2569
CspCI CAANNNNNGTGG 2 cut(s) 2425, 2460
CviQI GTAC 6 cut(s) 10, 123, 224, 644, 1086, 2569
DdeI CTNAG 8 cut(s) 70, 205, 342, 870, 1043, 1710, 2082, 2439
DrdI GACNNNNNNGTC 1 cut(s) 140
DriI GACNNNNNGTC 1 cut(s) 2518
DseDI GACNNNNNNGTC 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 541
Eam1104I CTCTTC 4 cut(s) 159, 2215, 2342, 2348
Eam1105I GACNNNNNGTC 1 cut(s) 2518
EarI CTCTTC 4 cut(s) 159, 2215, 2342, 2348
Ecl136II GAGCTC 1 cut(s) 2358
Eco130I CCWWGG 2 cut(s) 1360, 2145
Eco24I GRGCYC 2 cut(s) 2130, 2360
Eco31I GGTCTC 3 cut(s) 1229, 2016, 2022
Eco47I GGWCC 7 cut(s) 59, 524, 1520, 1628, 1652, 1766, 2004
Eco53kI GAGCTC 1 cut(s) 2358
Eco57I CTGAAG 4 cut(s) 408, 1244, 1338, 2349
Eco72I CACGTG 1 cut(s) 2045
Eco88I CYCGRG 1 cut(s) 2311
Eco91I GGTNACC 1 cut(s) 142
EcoICRI GAGCTC 1 cut(s) 2358
EcoNI CCTNNNNNAGG 1 cut(s) 531
EcoO109I RGGNCCY 4 cut(s) 1520, 1628, 1652, 2004
EcoO65I GGTNACC 1 cut(s) 142
EcoRII CCWGG 5 cut(s) 226, 526, 646, 1558, 2633
EcoT14I CCWWGG 2 cut(s) 1360, 2145
EcoT22I ATGCAT 1 cut(s) 1515
EcoT38I GRGCYC 2 cut(s) 2130, 2360
ErhI CCWWGG 2 cut(s) 1360, 2145
Esp3I CGTCTC 2 cut(s) 1834, 1941
FalI AAGNNNNNCTT 4 cut(s) 156, 188, 917, 949
FaqI GGGAC 2 cut(s) 45, 1533
FauI CCCGC 4 cut(s) 2073, 2186, 2374, 2640
FauNDI CATATG 3 cut(s) 763, 1515, 1591
FblI GTMKAC 2 cut(s) 79, 842
FokI GGATG 4 cut(s) 368, 1342, 1586, 1898
FriOI GRGCYC 2 cut(s) 2130, 2360
FspBI CTAG 5 cut(s) 309, 1625, 1940, 2487, 2625
GlaI GCGC 3 cut(s) 511, 2135, 2143
GsaI CCCAGC 3 cut(s) 1101, 2134, 2256
GsuI CTGGAG 2 cut(s) 468, 1995
HaeII RGCGCY 2 cut(s) 513, 2145
HaeIII GGCC 6 cut(s) 543, 799, 1406, 1848, 2077, 2300
HapII CCGG 2 cut(s) 422, 2588
HgaI GACGC 3 cut(s) 240, 1302, 2271
HhaI GCGC 3 cut(s) 512, 2136, 2144
Hin1I GRCGYC 1 cut(s) 232
Hin6I GCGC 3 cut(s) 510, 2134, 2142
HinP1I GCGC 3 cut(s) 510, 2134, 2142
HindIII AAGCTT 1 cut(s) 461
HpaII CCGG 2 cut(s) 422, 2588
HphI GGTGA 7 cut(s) 136, 380, 692, 869, 1907, 1970, 2183
Hpy166II GTNNAC 8 cut(s) 10, 80, 224, 569, 836, 843, 2436, 2512
Hpy188I TCNGA 7 cut(s) 262, 1224, 1318, 1713, 1806, 2095, 2200
Hpy8I GTNNAC 8 cut(s) 10, 80, 224, 569, 836, 843, 2436, 2512
Hpy99I CGWCG 5 cut(s) 2168, 2171, 2531, 2534, 2617
HpyAV CCTTC 7 cut(s) 73, 824, 1167, 1875, 2324, 2365, 2473
HpyCH4III ACNGT 5 cut(s) 59, 840, 1082, 1240, 2195
HpyCH4IV ACGT 4 cut(s) 185, 571, 2044, 2188
HpyF3I CTNAG 8 cut(s) 70, 205, 342, 870, 1043, 1710, 2082, 2439
HpySE526I ACGT 4 cut(s) 185, 571, 2044, 2188
Hsp92I GRCGYC 1 cut(s) 232
HspAI GCGC 3 cut(s) 510, 2134, 2142
KflI GGGWCCC 1 cut(s) 1520
Kpn2I TCCGGA 1 cut(s) 421
KpnI GGTACC 1 cut(s) 647
KspI CCGCGG 1 cut(s) 2075
LguI GCTCTTC 1 cut(s) 2348
LmnI GCTCC 5 cut(s) 320, 1375, 1603, 2608, 2650
Lsp1109I GCAGC 9 cut(s) 796, 1124, 1162, 1405, 1505, 2257, 2440, 2443, 2608
LweI GCATC 6 cut(s) 898, 1187, 1300, 1364, 1500, 1683
MabI ACCWGGT 1 cut(s) 646
MaeI CTAG 5 cut(s) 309, 1625, 1940, 2487, 2625
MaeII ACGT 4 cut(s) 185, 571, 2044, 2188
MaeIII GTNAC 6 cut(s) 142, 250, 629, 1076, 2045, 2189
MbiI CCGCTC 1 cut(s) 2647
MflI RGATCY 1 cut(s) 1717
MhlI GDGCHC 5 cut(s) 1372, 1600, 2100, 2130, 2360
MluCI AATT 5 cut(s) 17, 213, 381, 964, 1793
MluI ACGCGT 1 cut(s) 845
MlyI GAGTC 7 cut(s) 1033, 1079, 1136, 1340, 1661, 2210, 2528
MmeI TCCRAC 1 cut(s) 1744
Mph1103I ATGCAT 1 cut(s) 1515
MroI TCCGGA 1 cut(s) 421
MroXI GAANNNNTTC 1 cut(s) 2408
MseI TTAA 7 cut(s) 21, 212, 465, 473, 917, 936, 2544
MslI CAYNNNNRTG 2 cut(s) 1568, 2418
MspA1I CMGCKG 2 cut(s) 1496, 2074
MspCI CTTAAG 1 cut(s) 464
MspI CCGG 2 cut(s) 422, 2588
MspR9I CCNGG 5 cut(s) 228, 528, 648, 1560, 2635
Mva1269I GAATGC 1 cut(s) 723
MvaI CCWGG 5 cut(s) 228, 528, 648, 1560, 2635
MvnI CGCG 7 cut(s) 847, 1974, 2074, 2112, 2118, 2136, 2369
NdeI CATATG 3 cut(s) 763, 1515, 1591
NmeAIII GCCGAG 2 cut(s) 432, 798
NmuCI GTSAC 4 cut(s) 142, 629, 2045, 2189
NruI TCGCGA 1 cut(s) 1974
NsiI ATGCAT 1 cut(s) 1515
NspI RCATGY 4 cut(s) 244, 1453, 1555, 1642
NspV TTCGAA 2 cut(s) 2213, 2390
PaeI GCATGC 3 cut(s) 244, 1453, 1555
PaeR7I CTCGAG 1 cut(s) 2311
PagI TCATGA 1 cut(s) 1779
PciSI GCTCTTC 1 cut(s) 2348
PcsI WCGNNNNNNNCGW 2 cut(s) 1990, 2160
PctI GAATGC 1 cut(s) 723
PdmI GAANNNNTTC 1 cut(s) 2408
PfeI GAWTC 7 cut(s) 41, 101, 190, 257, 337, 1062, 1153
PflFI GACNNNGTC 1 cut(s) 1626
PflMI CCANNNNNTGG 2 cut(s) 719, 1592
PleI GAGTC 7 cut(s) 1033, 1078, 1135, 1339, 1661, 2209, 2527
PmaCI CACGTG 1 cut(s) 2045
PmlI CACGTG 1 cut(s) 2045
PpsI GAGTC 7 cut(s) 1033, 1078, 1135, 1339, 1661, 2209, 2527
Ppu21I YACGTR 1 cut(s) 2045
PpuMI RGGWCCY 4 cut(s) 1520, 1628, 1652, 2004
PsiI TTATAA 1 cut(s) 1533
Psp124BI GAGCTC 1 cut(s) 2360
Psp1406I AACGTT 1 cut(s) 185
Psp5II RGGWCCY 4 cut(s) 1520, 1628, 1652, 2004
Psp6I CCWGG 5 cut(s) 226, 526, 646, 1558, 2633
PspCI CACGTG 1 cut(s) 2045
PspEI GGTNACC 1 cut(s) 142
PspFI CCCAGC 3 cut(s) 1097, 2130, 2252
PspGI CCWGG 5 cut(s) 226, 526, 646, 1558, 2633
PspPI GGNCC 9 cut(s) 59, 524, 1520, 1628, 1652, 1766, 1846, 2004, 2076
PspPPI RGGWCCY 4 cut(s) 1520, 1628, 1652, 2004
PsrI GAACNNNNNNTAC 2 cut(s) 1242, 1274
PstNI CAGNNNCTG 2 cut(s) 788, 1402
PsuI RGATCY 1 cut(s) 1717
PsyI GACNNNGTC 1 cut(s) 1626
PvuII CAGCTG 1 cut(s) 1496
RruI TCGCGA 1 cut(s) 1974
RsaI GTAC 6 cut(s) 11, 124, 225, 645, 1087, 2570
RsaNI GTAC 6 cut(s) 10, 123, 224, 644, 1086, 2569
RseI CAYNNNNRTG 2 cut(s) 1568, 2418
SacI GAGCTC 1 cut(s) 2360
SacII CCGCGG 1 cut(s) 2075
SapI GCTCTTC 1 cut(s) 2348
SaqAI TTAA 7 cut(s) 21, 212, 465, 473, 917, 936, 2544
Sau96I GGNCC 9 cut(s) 59, 524, 1520, 1628, 1652, 1766, 1846, 2004, 2076
ScaI AGTACT 1 cut(s) 1087
SchI GAGTC 7 cut(s) 1033, 1079, 1136, 1340, 1661, 2210, 2528
ScrFI CCNGG 5 cut(s) 228, 528, 648, 1560, 2635
SduI GDGCHC 5 cut(s) 1372, 1600, 2100, 2130, 2360
SexAI ACCWGGT 1 cut(s) 646
SfaNI GCATC 6 cut(s) 898, 1187, 1300, 1364, 1500, 1683
SfcI CTRYAG 1 cut(s) 1963
Sfr274I CTCGAG 1 cut(s) 2311
Sfr303I CCGCGG 1 cut(s) 2075
SfuI TTCGAA 2 cut(s) 2213, 2390
SgrAI CRCCGGYG 1 cut(s) 2587
SgrBI CCGCGG 1 cut(s) 2075
SinI GGWCC 7 cut(s) 59, 524, 1520, 1628, 1652, 1766, 2004
SlaI CTCGAG 1 cut(s) 2311
SmiMI CAYNNNNRTG 2 cut(s) 1568, 2418
SmlI CTYRAG 3 cut(s) 464, 1482, 2311
SmoI CTYRAG 3 cut(s) 464, 1482, 2311
SpeI ACTAGT 1 cut(s) 2486
SphI GCATGC 3 cut(s) 244, 1453, 1555
Sse9I AATT 5 cut(s) 17, 213, 381, 964, 1793
SspI AATATT 1 cut(s) 96
SspMI CTAG 5 cut(s) 309, 1625, 1940, 2487, 2625
SstI GAGCTC 1 cut(s) 2360
StyD4I CCNGG 5 cut(s) 226, 526, 646, 1558, 2633
StyI CCWWGG 2 cut(s) 1360, 2145
TaaI ACNGT 5 cut(s) 59, 840, 1082, 1240, 2195
TaiI ACGT 4 cut(s) 188, 574, 2047, 2191
TaqII GACCGA 3 cut(s) 2040, 2046, 2136
TasI AATT 5 cut(s) 17, 213, 381, 964, 1793
TatI WGTACW 2 cut(s) 9, 1085
TauI GCSGC 4 cut(s) 2077, 2225, 2462, 2662
TfiI GAWTC 7 cut(s) 41, 101, 190, 257, 337, 1062, 1153
Tru1I TTAA 7 cut(s) 21, 212, 465, 473, 917, 936, 2544
Tru9I TTAA 7 cut(s) 21, 212, 465, 473, 917, 936, 2544
TscAI CASTG 6 cut(s) 671, 724, 774, 884, 990, 2455
TseFI GTSAC 4 cut(s) 142, 629, 2045, 2189
TseI GCWGC 9 cut(s) 809, 1137, 1175, 1393, 1493, 2270, 2453, 2456, 2596
Tsp45I GTSAC 4 cut(s) 142, 629, 2045, 2189
TspRI CASTG 6 cut(s) 671, 724, 774, 884, 990, 2455
Tth111I GACNNNGTC 1 cut(s) 1626
Van91I CCANNNNNTGG 2 cut(s) 719, 1592
Vha464I CTTAAG 1 cut(s) 464
VpaK11BI GGWCC 7 cut(s) 59, 524, 1520, 1628, 1652, 1766, 2004
XagI CCTNNNNNAGG 1 cut(s) 531
XapI RAATTY 3 cut(s) 17, 381, 1793
XbaI TCTAGA 1 cut(s) 2624
XceI RCATGY 4 cut(s) 244, 1453, 1555, 1642
XcmI CCANNNNNNNNNTGG 1 cut(s) 492
XhoI CTCGAG 1 cut(s) 2311
XmiI GTMKAC 2 cut(s) 79, 842
XmnI GAANNNNTTC 1 cut(s) 2408
XspI CTAG 5 cut(s) 309, 1625, 1940, 2487, 2625
ZrmI AGTACT 1 cut(s) 1087
Zsp2I ATGCAT 1 cut(s) 1515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.