MD04G1061900.v1.1

DWNN domain, A CCHC-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0001377
Physical Location & Seq
Forward (+)
8167975 .. 8175412
7438 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1061900.v1.1.491

Sequence Viewer

Length: 2793 bp
ATGGCGGTGTATTATAAATTTAAGAGTGCAAAAGACTATGATTCTATTCCTATGGACGGCCCGTTCATCGCAGTTGGTATTTTGAAAGAAAAAATATATGAATCCAAGCACTTAGGGCGGGGTACCGATTACGACCTCGTCGTCACCAATGCCCAGACCAATGAAGAGTATCTTGATGAAGGGATGTTGATTCCAAAAAATACGTCAGTTTTGATACGCCGCGTACCTGGAAGGCCTCCGATGCCCATTGTTACTGATTCAGAGCGAAAGGTGGAAGATGAGGTGGAGGACACTGAACCAGAAAGGACTAGCTTTCTGGCAGCTGAATCATCTGCCACGAAATATCCTGGTGATCCAGATTGGGATGATTATGGGGATGATTTGTATGAAATTCCTGAAGTGCTGGCTGTGCAGACAAGCTATCAGGCTCCGGATGCGCAGCCAACTGATAAAGCTGATGAAGATAGCAAGATTAAGGCTTTGATCGACACTTCAGCCTTGGAATGGCAACACCAAGGTCCTGACAGCTTTGGTCCTGGTAGAGGTTTTGGCAGGGGTGGAAGAATGATGAATGGACGTGGTATTGGTCGCGGAGGAGGGGGTTTTGAGAGGAAAACACCTCCACAGGGATATATTTGTCATAGGTGTAAGGTGCCTGGGCATTATATTCAGCACTGCCCTACGAATGGTGATCCAAATTTTGACATTAAAAGAGTTAAGCCACCCACTGGAATTCCTAAGTCCATGCTGATGGCAAACCCAGATGGCTCATATAAATTGCCAAGTGGTGATAAAGCTGTATTGAGGCCGAATGAGGCTGCTTTTGAGAAAGAGATTGAAGGTTTACCATCTACACGTTCGGTTGGTGATCTACCGCCTGAGCTACACTGCCCATTGTGCAAAGAAGTGATGAAAGATGCTGTGCTAACGAGCAAGTGTTGCTTTAAAAGCTTTTGTGATAAGTGTATCCGGAACTACATTATGTCCAGGTCAGTGTGTATCTGTGGGGCTACAAATACACTGGCAGACGATCTACTGCCAAATAAGACGCTCAGAGATACAATCAATCGCATCTTGGAATCTGGTGGTAACAGTAGTGCTGATAATGCTGGGAGTACATTCCATGTTCAAGATATGGAGTCTGCTCGCTGTCCACAACCCAAGATTCCTTCCCCCACTGTATCTGCTGCATCAAAAGGAGAAGAAAAACAGTTACCTTTGAATGAAGAACCTCCAAAGATCCAGGAAACTGAAGATGAGGTAAAGCCTGTTCTTCCCCAGCAGCAGATTTTAGACAGAGTGAGAACTACAAAAGTAGTTGATGCATCTGAAGCCACACATGAGTCAATGAGTGTGAAGGAACCGGCATCACAAGGGAGTGCTCCACTGGTTGAGGAAGAAGTGCAGCAAAGGATGGCTTCTGGGGAGGCAGGAAAGAAAAGGAAAAAGAAGAAAATTCGAGTGCCTGCGACTGACATGCAATGGAGAAACCCTCAAGATCTTGCAGCTGAAAACTATATGATGCCTATGGGCCCTGCTGCTTATAATCCATACTGGAATGGCATGCAACCTAGCATGGGCATGGAAGGATACATGACACCATATGGTGGTCCGATGCCGTATATGGGTTATGGTCCGATGGACATGCCATTTGGGGGTCTTGGTCCACAGGACCCATTTGGTTCTCAAGGCTATATGATGCCCATGGTTCCGCCTCAGAGGGATCTTGCGGACTTTGGTATGGGTATGAATGGCATGAATGGCATGAATGGCATGAATGGAATGAATGGGATGAATGGGATGAATGGCATGAATGGGATGAATGGCATGAATGGCATGCATGGGATGAATGGCATGCATGGACCCCCCATCATGAGCAGAGAAGAATTTGAGGCTCGGAAAGCTGATTTGAGAAGGAAGCGTGAAAATGAAAGACGGGGTCAAGGCAGGGAGTTGTCCAAAGATGGGGAGTACGGAAGGGAAGTGAGCGGCGGCGATGTTCCTCCAATGAAACCAAAATCTAAGTCAATGGCCCGATCACCAAGCCCAGATTATGGTAATCATCACCGCAGTCACAGACGCGAGAGGCCGTCTCCAGAACGAAGACCCTCACGTGACCCACGTGACCTGGAGCCACAGCCGCCTCCGCCTCCGCCTCCGCGTCCTCCAAAGAGAAACTCCGACCACCACCACGACAGAGAACGCGAGCGCGATCGAGATCGAGAACGCGAGAGGGACCACGACCACGACCACGAGGATGGTCATCCCCGCCATAAACGCCACCGTTCTGAGTCGTCGTTGGGAAAGCCTTCCGGTCTAACGACAACATCGGCGAAATCTGCCTCCTCTATAGCATCAGCTGCGGCAGAAGCGGCGGCGGATCGGAAGCACAAGGCAAGCGTGTTCTCTCGCATAAGCTTTCCTGAGGGAGAAGTGAGCAAGAAGCGGAAGGCCTCTTCTTCCTCCACTGCTTCTGCCGTCGCTCCTTCTCCGGCGGAGGAGGATAACAGGTCGGCGCATCACCATCACAAGGAGTTGTCGTCCTCCTTGGCGAATGGGTTCTACGAGGAGTACAAGTCGTCGTCTACGGCGGCCAAGGCTGCGAGCAGCGGAACTGGAAGCAGAAAGACTATGGTCAGAGCTGCTTCCATGGAGTATGAGTCGAGCGACGACGATCGACACTTCAAGAGGAAGCCGTCGAGGTACGAGGAGTCGCCGCCGCAGGCAGCGGAGCAGGAAGAGCCCTACAGGCACTCGAGAGGCGGCAAGGATCGGGAACGCAGGCAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

931

Amino Acids

103.05

Weight (kDa)

7.01

Isoelectric Point (pI)

54.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DWNN PF08783 3 - 76 1.1e-29 DWNN domain
zf-CCHC_2 PF13696 208 - 228 5.3e-09 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 15, 1545
AasI GACNNNNNNGTC 1 cut(s) 140
Acc16I TGCGCA 1 cut(s) 438
Acc65I GGTACC 1 cut(s) 122
AccB1I GGYRCC 2 cut(s) 122, 652
AccB7I CCANNNNNTGG 3 cut(s) 728, 1607, 2054
AccBSI CCGCTC 1 cut(s) 1989
AccI GTMKAC 1 cut(s) 2585
AccII CGCG 7 cut(s) 222, 591, 2082, 2161, 2205, 2211, 2229
AccIII TCCGGA 2 cut(s) 430, 969
AclWI GGATC 6 cut(s) 347, 686, 1234, 1731, 2388, 2778
AcoI YGGCCR 1 cut(s) 2592
AcsI RAATTY 6 cut(s) 17, 390, 697, 732, 1455, 1886
AcuI CTGAAG 4 cut(s) 417, 477, 1272, 1350
AcvI CACGTG 2 cut(s) 2114, 2123
AfaI GTAC 6 cut(s) 124, 225, 1117, 1973, 2573, 2705
AflIII ACRYGT 1 cut(s) 854
AgsI TTSAA 5 cut(s) 85, 839, 1130, 1222, 2686
AjiI CACGTC 1 cut(s) 578
AjnI CCWGG 7 cut(s) 226, 346, 535, 655, 986, 1242, 2127
AloI GAACNNNNNNTCC 2 cut(s) 47, 79
Alw21I GWGCWC 1 cut(s) 1384
Alw26I GTCTC 1 cut(s) 2097
AlwI GGATC 6 cut(s) 347, 686, 1234, 1731, 2388, 2778
Ama87I CYCGRG 1 cut(s) 2755
Aor13HI TCCGGA 2 cut(s) 430, 969
AoxI GGCC 8 cut(s) 58, 233, 806, 1531, 2031, 2087, 2451, 2592
ApaI GGGCCC 1 cut(s) 1535
ApoI RAATTY 6 cut(s) 17, 390, 697, 732, 1455, 1886
ArsI GACNNNNNNTTYG 6 cut(s) 188, 220, 1634, 1666, 2009, 2041
Asp700I GAANNNNTTC 2 cut(s) 2308, 2558
Asp718I GGTACC 1 cut(s) 122
AspLEI GCGC 3 cut(s) 439, 2211, 2518
AsuHPI GGTGA 8 cut(s) 136, 362, 701, 800, 878, 2031, 2057, 2513
AvaI CYCGRG 1 cut(s) 2755
AvaII GGWCC 8 cut(s) 518, 533, 1610, 1634, 1664, 1672, 1862, 2236
AxyI CCTNAGG 1 cut(s) 2424
BaeGI GKGCMC 1 cut(s) 1535
BanI GGYRCC 2 cut(s) 122, 652
BanII GRGCYC 2 cut(s) 1535, 2745
BauI CACGAG 1 cut(s) 2252
BbrPI CACGTG 2 cut(s) 2114, 2123
BbsI GAAGAC 1 cut(s) 2110
Bbv12I GWGCWC 1 cut(s) 1384
BccI CCATC 9 cut(s) 745, 758, 856, 1408, 1633, 1877, 1958, 2252, 2532
BceAI ACGGC 6 cut(s) 73, 1603, 2074, 2462, 2604, 2680
BcgI CGANNNNNNTGC 4 cut(s) 1459, 1493, 1627, 1661
BciT130I CCWGG 7 cut(s) 228, 348, 537, 657, 988, 1244, 2129
BciVI GTATCC 2 cut(s) 977, 1583
BcoDI GTCTC 1 cut(s) 2097
BfaI CTAG 2 cut(s) 309, 1572
BfmI CTRYAG 2 cut(s) 2349, 2746
BfuI GTATCC 2 cut(s) 977, 1583
BglI GCCNNNNNGGC 1 cut(s) 2749
BglII AGATCT 1 cut(s) 1498
Bme1390I CCNGG 7 cut(s) 228, 348, 537, 657, 988, 1244, 2129
Bme18I GGWCC 8 cut(s) 518, 533, 1610, 1634, 1664, 1672, 1862, 2236
BmeT110I CYCGRG 1 cut(s) 2755
BmgBI CACGTC 1 cut(s) 578
BmrFI CCNGG 7 cut(s) 228, 348, 537, 657, 988, 1244, 2129
BoxI GACNNNNGTC 1 cut(s) 2633
BpiI GAAGAC 1 cut(s) 2110
BplI GAGNNNNNCTC 4 cut(s) 1477, 1509, 2077, 2109
BpmI CTGGAG 2 cut(s) 2079, 2150
Bpu10I CCTNAGC 1 cut(s) 879
BpuEI CTTGAG 2 cut(s) 1479, 1671
BsaAI YACGTR 2 cut(s) 2114, 2123
BsaBI GATNNNNATC 2 cut(s) 2217, 2262
BsaJI CCNNGG 7 cut(s) 498, 514, 656, 1704, 2547, 2595, 2649
BsaWI WCCGGW 3 cut(s) 430, 969, 2312
BsaXI ACNNNNNCTCC 6 cut(s) 2525, 2555, 2561, 2591, 2645, 2675
Bse118I RCCGGY 1 cut(s) 1363
Bse1I ACTGG 5 cut(s) 733, 1026, 1392, 1559, 2620
Bse21I CCTNAGG 1 cut(s) 2424
Bse3DI GCAATG 1 cut(s) 1487
Bse8I GATNNNNATC 2 cut(s) 2217, 2262
BseAI TCCGGA 2 cut(s) 430, 969
BseBI CCWGG 7 cut(s) 228, 348, 537, 657, 988, 1244, 2129
BseDI CCNNGG 7 cut(s) 498, 514, 656, 1704, 2547, 2595, 2649
BseJI GATNNNNATC 2 cut(s) 2217, 2262
BseMI GCAATG 1 cut(s) 1487
BseMII CTCAG 5 cut(s) 870, 1066, 1730, 2280, 2415
BseNI ACTGG 5 cut(s) 733, 1026, 1392, 1559, 2620
BseRI GAGGAG 5 cut(s) 609, 2335, 2513, 2582, 2723
BseSI GKGCMC 1 cut(s) 1535
BseYI CCCAGC 2 cut(s) 1109, 1278
BsgI GTGCAG 2 cut(s) 431, 1424
Bsh1236I CGCG 7 cut(s) 222, 591, 2082, 2161, 2205, 2211, 2229
Bsh1285I CGRYCG 2 cut(s) 2215, 2677
BshFI GGCC 8 cut(s) 60, 235, 808, 1533, 2033, 2089, 2453, 2594
BshNI GGYRCC 2 cut(s) 122, 652
BsiEI CGRYCG 2 cut(s) 2215, 2677
BsiHKAI GWGCWC 1 cut(s) 1384
BsiHKCI CYCGRG 1 cut(s) 2755
BsiSI CCGG 5 cut(s) 431, 970, 1364, 2313, 2492
BslFI GGGAC 1 cut(s) 2249
BsmAI GTCTC 1 cut(s) 2097
BsmBI CGTCTC 1 cut(s) 2097
BsmFI GGGAC 1 cut(s) 2249
BsnI GGCC 8 cut(s) 60, 235, 808, 1533, 2033, 2089, 2453, 2594
BsoBI CYCGRG 1 cut(s) 2755
Bsp120I GGGCCC 1 cut(s) 1531
Bsp1286I GDGCHC 3 cut(s) 1384, 1535, 2745
Bsp13I TCCGGA 2 cut(s) 430, 969
Bsp19I CCATGG 2 cut(s) 1704, 2649
BspANI GGCC 8 cut(s) 60, 235, 808, 1533, 2033, 2089, 2453, 2594
BspCNI CTCAG 5 cut(s) 871, 1065, 1729, 2281, 2416
BspEI TCCGGA 2 cut(s) 430, 969
BspFNI CGCG 7 cut(s) 222, 591, 2082, 2161, 2205, 2211, 2229
BspHI TCATGA 1 cut(s) 1872
BspPI GGATC 6 cut(s) 347, 686, 1234, 1731, 2388, 2778
BspQI GCTCTTC 1 cut(s) 2733
BspT107I GGYRCC 2 cut(s) 122, 652
BsrBI CCGCTC 1 cut(s) 1989
BsrDI GCAATG 1 cut(s) 1487
BsrFI RCCGGY 1 cut(s) 1363
BsrI ACTGG 5 cut(s) 733, 1026, 1392, 1559, 2620
BssAI RCCGGY 1 cut(s) 1363
BssECI CCNNGG 7 cut(s) 498, 514, 656, 1704, 2547, 2595, 2649
BssSI CACGAG 1 cut(s) 2252
BssT1I CCWWGG 6 cut(s) 498, 514, 1704, 2547, 2595, 2649
Bst2BI CACGAG 1 cut(s) 2252
Bst2UI CCWGG 7 cut(s) 228, 348, 537, 657, 988, 1244, 2129
Bst4CI ACNGT 4 cut(s) 1094, 1180, 1212, 2285
Bst6I CTCTTC 3 cut(s) 159, 2461, 2733
BstAPI GCANNNNNTGC 2 cut(s) 939, 2360
BstBAI YACGTR 2 cut(s) 2114, 2123
BstDEI CTNAG 8 cut(s) 112, 738, 879, 1052, 1716, 2022, 2289, 2424
BstDSI CCRYGG 2 cut(s) 1704, 2649
BstENI CCTNNNNNAGG 1 cut(s) 540
BstFNI CGCG 7 cut(s) 222, 591, 2082, 2161, 2205, 2211, 2229
BstHHI GCGC 3 cut(s) 439, 2211, 2518
BstMAI GTCTC 1 cut(s) 2097
BstMCI CGRYCG 2 cut(s) 2215, 2677
BstNI CCWGG 7 cut(s) 228, 348, 537, 657, 988, 1244, 2129
BstNSI RCATGY 5 cut(s) 1480, 1567, 1648, 1840, 1858
BstPAI GACNNNNGTC 1 cut(s) 2633
BstSCI CCNGG 7 cut(s) 226, 346, 535, 655, 986, 1242, 2127
BstSFI CTRYAG 2 cut(s) 2349, 2746
BstSLI GKGCMC 1 cut(s) 1535
BstUI CGCG 7 cut(s) 222, 591, 2082, 2161, 2205, 2211, 2229
BstV2I GAAGAC 1 cut(s) 2110
BstX2I RGATCY 3 cut(s) 1239, 1498, 1723
BstXI CCANNNNNNTGG 2 cut(s) 751, 2258
BstYI RGATCY 3 cut(s) 1239, 1498, 1723
Bsu36I CCTNAGG 1 cut(s) 2424
BsuI GTATCC 2 cut(s) 977, 1583
BsuRI GGCC 8 cut(s) 60, 235, 808, 1533, 2033, 2089, 2453, 2594
BtgI CCRYGG 2 cut(s) 1704, 2649
BtgZI GCGATG 2 cut(s) 52, 2010
BtrI CACGTC 1 cut(s) 578
BtsI GCAGTG 3 cut(s) 673, 886, 2466
BtsIMutI CAGTG 9 cut(s) 291, 673, 726, 886, 999, 1019, 1176, 1385, 2466
CciI TCATGA 1 cut(s) 1872
CfoI GCGC 3 cut(s) 439, 2211, 2518
Cfr10I RCCGGY 1 cut(s) 1363
CseI GACGC 3 cut(s) 1057, 2088, 2150
Csp6I GTAC 6 cut(s) 123, 224, 1116, 1972, 2572, 2704
CviQI GTAC 6 cut(s) 123, 224, 1116, 1972, 2572, 2704
DdeI CTNAG 8 cut(s) 112, 738, 879, 1052, 1716, 2022, 2289, 2424
DraI TTTAAA 1 cut(s) 946
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 2592
Eam1104I CTCTTC 3 cut(s) 159, 2461, 2733
EarI CTCTTC 3 cut(s) 159, 2461, 2733
EciI GGCGGA 5 cut(s) 1701, 2136, 2142, 2393, 2510
Eco130I CCWWGG 6 cut(s) 498, 514, 1704, 2547, 2595, 2649
Eco147I AGGCCT 2 cut(s) 235, 2453
Eco24I GRGCYC 2 cut(s) 1535, 2745
Eco47I GGWCC 8 cut(s) 518, 533, 1610, 1634, 1664, 1672, 1862, 2236
Eco57I CTGAAG 4 cut(s) 417, 477, 1272, 1350
Eco72I CACGTG 2 cut(s) 2114, 2123
Eco81I CCTNAGG 1 cut(s) 2424
Eco88I CYCGRG 1 cut(s) 2755
EcoNI CCTNNNNNAGG 1 cut(s) 540
EcoO109I RGGNCCY 3 cut(s) 518, 1532, 1672
EcoRI GAATTC 1 cut(s) 732
EcoRII CCWGG 7 cut(s) 226, 346, 535, 655, 986, 1242, 2127
EcoT14I CCWWGG 6 cut(s) 498, 514, 1704, 2547, 2595, 2649
EcoT22I ATGCAT 3 cut(s) 1327, 1842, 1860
EcoT38I GRGCYC 2 cut(s) 1535, 2745
ErhI CCWWGG 6 cut(s) 498, 514, 1704, 2547, 2595, 2649
Esp3I CGTCTC 1 cut(s) 2097
FalI AAGNNNNNCTT 6 cut(s) 156, 188, 926, 958, 1402, 1434
FaqI GGGAC 1 cut(s) 2249
FauI CCCGC 2 cut(s) 111, 2276
FauNDI CATATG 1 cut(s) 1603
FblI GTMKAC 1 cut(s) 2585
FriOI GRGCYC 2 cut(s) 1535, 2745
FspBI CTAG 2 cut(s) 309, 1572
FspI TGCGCA 1 cut(s) 438
GlaI GCGC 3 cut(s) 438, 2210, 2517
GsaI CCCAGC 2 cut(s) 1113, 1282
GsuI CTGGAG 2 cut(s) 2079, 2150
HaeIII GGCC 8 cut(s) 60, 235, 808, 1533, 2033, 2089, 2453, 2594
HapII CCGG 5 cut(s) 431, 970, 1364, 2313, 2492
HgaI GACGC 3 cut(s) 1057, 2088, 2150
HhaI GCGC 3 cut(s) 439, 2211, 2518
Hin6I GCGC 3 cut(s) 437, 2209, 2516
HinP1I GCGC 3 cut(s) 437, 2209, 2516
HindIII AAGCTT 2 cut(s) 949, 2416
HpaII CCGG 5 cut(s) 431, 970, 1364, 2313, 2492
HphI GGTGA 8 cut(s) 136, 362, 701, 800, 878, 2031, 2057, 2513
Hpy166II GTNNAC 4 cut(s) 845, 1154, 1667, 2586
Hpy8I GTNNAC 4 cut(s) 845, 1154, 1667, 2586
Hpy99I CGWCG 7 cut(s) 143, 2299, 2483, 2584, 2672, 2675, 2701
HpyCH4III ACNGT 4 cut(s) 1094, 1180, 1212, 2285
HpyCH4IV ACGT 5 cut(s) 203, 577, 856, 2113, 2122
HpyF3I CTNAG 8 cut(s) 112, 738, 879, 1052, 1716, 2022, 2289, 2424
HpySE526I ACGT 5 cut(s) 203, 577, 856, 2113, 2122
HspAI GCGC 3 cut(s) 437, 2209, 2516
Kpn2I TCCGGA 2 cut(s) 430, 969
KpnI GGTACC 1 cut(s) 126
LguI GCTCTTC 1 cut(s) 2733
LmnI GCTCC 5 cut(s) 433, 1387, 2131, 2488, 2731
MaeI CTAG 2 cut(s) 309, 1572
MaeII ACGT 5 cut(s) 203, 577, 856, 2113, 2122
MaeIII GTNAC 7 cut(s) 142, 250, 1088, 1212, 2072, 2114, 2123
MbiI CCGCTC 1 cut(s) 1989
MflI RGATCY 3 cut(s) 1239, 1498, 1723
MhlI GDGCHC 3 cut(s) 1384, 1535, 2745
MluCI AATT 7 cut(s) 17, 390, 697, 732, 776, 1455, 1886
MlyI GAGTC 5 cut(s) 1148, 1352, 2300, 2669, 2720
MmeI TCCRAC 1 cut(s) 2205
Mph1103I ATGCAT 3 cut(s) 1327, 1842, 1860
MroI TCCGGA 2 cut(s) 430, 969
MroXI GAANNNNTTC 2 cut(s) 2308, 2558
MseI TTAA 5 cut(s) 21, 474, 708, 717, 945
MslI CAYNNNNRTG 3 cut(s) 749, 1580, 2256
MspA1I CMGCKG 5 cut(s) 323, 1508, 2360, 2610, 2729
MspI CCGG 5 cut(s) 431, 970, 1364, 2313, 2492
MspR9I CCNGG 7 cut(s) 228, 348, 537, 657, 988, 1244, 2129
MvaI CCWGG 7 cut(s) 228, 348, 537, 657, 988, 1244, 2129
MvnI CGCG 7 cut(s) 222, 591, 2082, 2161, 2205, 2211, 2229
NcoI CCATGG 2 cut(s) 1704, 2649
NdeI CATATG 1 cut(s) 1603
NmuCI GTSAC 4 cut(s) 142, 2072, 2114, 2123
NsbI TGCGCA 1 cut(s) 438
NsiI ATGCAT 3 cut(s) 1327, 1842, 1860
NspI RCATGY 5 cut(s) 1480, 1567, 1648, 1840, 1858
PaeI GCATGC 3 cut(s) 1567, 1840, 1858
PaeR7I CTCGAG 1 cut(s) 2755
PagI TCATGA 1 cut(s) 1872
PceI AGGCCT 2 cut(s) 235, 2453
PciSI GCTCTTC 1 cut(s) 2733
PcsI WCGNNNNNNNCGW 2 cut(s) 138, 2119
PdmI GAANNNNTTC 2 cut(s) 2308, 2558
PfeI GAWTC 7 cut(s) 41, 101, 190, 257, 326, 1079, 1165
PflFI GACNNNGTC 2 cut(s) 137, 1938
PflMI CCANNNNNTGG 3 cut(s) 728, 1607, 2054
PfoI TCCNGGA 1 cut(s) 1242
Ple19I CGATCG 2 cut(s) 2215, 2677
PleI GAGTC 5 cut(s) 1147, 1351, 2299, 2668, 2719
PmaCI CACGTG 2 cut(s) 2114, 2123
PmlI CACGTG 2 cut(s) 2114, 2123
PpsI GAGTC 5 cut(s) 1147, 1351, 2299, 2668, 2719
Ppu21I YACGTR 2 cut(s) 2114, 2123
PpuMI RGGWCCY 2 cut(s) 518, 1672
PshAI GACNNNNGTC 1 cut(s) 2633
PsiI TTATAA 2 cut(s) 15, 1545
Psp5II RGGWCCY 2 cut(s) 518, 1672
Psp6I CCWGG 7 cut(s) 226, 346, 535, 655, 986, 1242, 2127
PspCI CACGTG 2 cut(s) 2114, 2123
PspFI CCCAGC 2 cut(s) 1109, 1278
PspGI CCWGG 7 cut(s) 226, 346, 535, 655, 986, 1242, 2127
PspOMI GGGCCC 1 cut(s) 1531
PspPPI RGGWCCY 2 cut(s) 518, 1672
PsrI GAACNNNNNNTAC 2 cut(s) 1254, 1286
PsuI RGATCY 3 cut(s) 1239, 1498, 1723
PsyI GACNNNGTC 2 cut(s) 137, 1938
PvuI CGATCG 2 cut(s) 2215, 2677
PvuII CAGCTG 3 cut(s) 323, 1508, 2360
RsaI GTAC 6 cut(s) 124, 225, 1117, 1973, 2573, 2705
RsaNI GTAC 6 cut(s) 123, 224, 1116, 1972, 2572, 2704
RseI CAYNNNNRTG 3 cut(s) 749, 1580, 2256
SapI GCTCTTC 1 cut(s) 2733
SaqAI TTAA 5 cut(s) 21, 474, 708, 717, 945
SchI GAGTC 5 cut(s) 1148, 1352, 2300, 2669, 2720
ScrFI CCNGG 7 cut(s) 228, 348, 537, 657, 988, 1244, 2129
SduI GDGCHC 3 cut(s) 1384, 1535, 2745
SfcI CTRYAG 2 cut(s) 2349, 2746
Sfr274I CTCGAG 1 cut(s) 2755
SinI GGWCC 8 cut(s) 518, 533, 1610, 1634, 1664, 1672, 1862, 2236
SlaI CTCGAG 1 cut(s) 2755
SmiMI CAYNNNNRTG 3 cut(s) 749, 1580, 2256
SmlI CTYRAG 3 cut(s) 1494, 1686, 2755
SmoI CTYRAG 3 cut(s) 1494, 1686, 2755
SphI GCATGC 3 cut(s) 1567, 1840, 1858
Sse9I AATT 7 cut(s) 17, 390, 697, 732, 776, 1455, 1886
SseBI AGGCCT 2 cut(s) 235, 2453
SspMI CTAG 2 cut(s) 309, 1572
StuI AGGCCT 2 cut(s) 235, 2453
StyD4I CCNGG 7 cut(s) 226, 346, 535, 655, 986, 1242, 2127
StyI CCWWGG 6 cut(s) 498, 514, 1704, 2547, 2595, 2649
TaaI ACNGT 4 cut(s) 1094, 1180, 1212, 2285
TaiI ACGT 5 cut(s) 206, 580, 859, 2116, 2125
TaqI TCGA 8 cut(s) 486, 1459, 2215, 2221, 2663, 2677, 2699, 2756
TasI AATT 7 cut(s) 17, 390, 697, 732, 776, 1455, 1886
TatI WGTACW 2 cut(s) 1115, 2571
TfiI GAWTC 7 cut(s) 41, 101, 190, 257, 326, 1079, 1165
Tru1I TTAA 5 cut(s) 21, 474, 708, 717, 945
Tru9I TTAA 5 cut(s) 21, 474, 708, 717, 945
TscAI CASTG 9 cut(s) 298, 680, 733, 893, 999, 1026, 1183, 1392, 2473
TseFI GTSAC 4 cut(s) 142, 2072, 2114, 2123
Tsp45I GTSAC 4 cut(s) 142, 2072, 2114, 2123
TspGWI ACGGA 1 cut(s) 1989
TspRI CASTG 9 cut(s) 298, 680, 733, 893, 999, 1026, 1183, 1392, 2473
Tth111I GACNNNGTC 2 cut(s) 137, 1938
Van91I CCANNNNNTGG 3 cut(s) 728, 1607, 2054
VpaK11BI GGWCC 8 cut(s) 518, 533, 1610, 1634, 1664, 1672, 1862, 2236
XagI CCTNNNNNAGG 1 cut(s) 540
XapI RAATTY 6 cut(s) 17, 390, 697, 732, 1455, 1886
XceI RCATGY 5 cut(s) 1480, 1567, 1648, 1840, 1858
XhoI CTCGAG 1 cut(s) 2755
XmiI GTMKAC 1 cut(s) 2585
XmnI GAANNNNTTC 2 cut(s) 2308, 2558
XspI CTAG 2 cut(s) 309, 1572
Zsp2I ATGCAT 3 cut(s) 1327, 1842, 1860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.