Rmu_co8437399.1_g000001

DWNN domain, A CCHC-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8437399.1
OG0001377
Physical Location & Seq
Reverse (-)
2 .. 1554
1553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8437399.1_g000001.1.cds

Sequence Viewer

Length: 830 bp
ccaaataagactctcagggataccatcaatcgaatcttggagtctggtaacagtagtactgataacgctgggagtgctttccaagttcaagatatggagtctgcacgctgcccacaacccaagattccttcccctactttatctgctgcatcaaagggagaaaataagcctttacctttgcatgaagaagctctgaagacacaggagaccgtagatgaggtaagacctgttcctgccccacagcagatgttagagaatgtgaggaatacaaaagtagccgatgcatctgaagctacccatgagtcaatgagtgtaaaggaacctgcatcccaagggagtgctcccctggttgatgaagaagtgcagcagaggctggcctctgtggaggcaggaaagaaaaggaaaaagaagaaagttcgcatgcctgcaaatgaaatgcaatggaagacacctcaagaccttgcagctgaaaactacatgatgcatatggggccttctgctgcttataatccatactggaatggcatgcaacctggcatgggcatggatggatatatgccaccatatggtgctcctatgccatatatggggtatggtctaggtcctatggacatgccatttgggggtcctttcccaccggactcatttggtggtcaaggttatatgatgcctatggttccacctcagagggatcttgcggactttggtatgggtatgggaatgaatggaatgaatgtcggacctcctcctatcatgagcagagaggaatttgaggctcggaaagctgatttgaggaggaagcgtgaaaatgagagacggggccaaaggta
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

276

Amino Acids

30.45

Weight (kDa)

6.45

Isoelectric Point (pI)

63.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 507
Acc36I ACCTGC 1 cut(s) 331
AccB7I CCANNNNNTGG 1 cut(s) 566
AciI CCGC 1 cut(s) 698
AclWI GGATC 1 cut(s) 699
AcsI RAATTY 1 cut(s) 767
AcuI CTGAAG 2 cut(s) 215, 309
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 4 cut(s) 539, 566, 587, 623
AgsI TTSAA 1 cut(s) 89
AjnI CCWGG 2 cut(s) 345, 532
AluBI AGCT 4 cut(s) 191, 293, 467, 785
AluI AGCT 4 cut(s) 191, 293, 467, 785
Alw21I GWGCWC 2 cut(s) 343, 574
Alw26I GTCTC 2 cut(s) 200, 808
AlwI GGATC 1 cut(s) 699
AlwNI CAGNNNCTG 1 cut(s) 373
AoxI GGCC 3 cut(s) 375, 491, 820
ApeKI GCWGC 5 cut(s) 108, 146, 364, 464, 500
ApoI RAATTY 1 cut(s) 767
ArsI GACNNNNNNTTYG 2 cut(s) 602, 634
AspS9I GGNCC 5 cut(s) 491, 602, 626, 740, 820
AvaII GGWCC 3 cut(s) 602, 626, 740
BbsI GAAGAC 2 cut(s) 203, 452
Bbv12I GWGCWC 2 cut(s) 343, 574
BbvI GCAGC 5 cut(s) 95, 133, 376, 476, 487
BccI CCATC 2 cut(s) 32, 542
BciT130I CCWGG 2 cut(s) 347, 534
BciVI GTATCC 1 cut(s) 13
BcoDI GTCTC 2 cut(s) 200, 808
BfaI CTAG 1 cut(s) 599
BfuAI ACCTGC 1 cut(s) 331
BfuI GTATCC 1 cut(s) 13
BisI GCNGC 5 cut(s) 109, 147, 365, 465, 501
BlsI GCNGC 5 cut(s) 110, 148, 366, 466, 502
BmcAI AGTACT 1 cut(s) 58
Bme1390I CCNGG 2 cut(s) 347, 534
Bme18I GGWCC 3 cut(s) 602, 626, 740
BmgT120I GGNCC 5 cut(s) 491, 602, 626, 740, 820
BmiI GGNNCC 5 cut(s) 321, 492, 627, 678, 821
BmrFI CCNGG 2 cut(s) 347, 534
BmsI GCATC 6 cut(s) 158, 271, 293, 335, 471, 657
BpiI GAAGAC 2 cut(s) 203, 452
BpuEI CTTGAG 1 cut(s) 438
BsaI GGTCTC 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 331, 345
BsaWI WCCGGW 1 cut(s) 637
BsaXI ACNNNNNCTCC 2 cut(s) 787, 817
Bsc4I CCNNNNNNNGG 4 cut(s) 539, 566, 587, 623
Bse1I ACTGG 1 cut(s) 521
Bse3DI GCAATG 1 cut(s) 446
BseBI CCWGG 2 cut(s) 347, 534
BseDI CCNNGG 2 cut(s) 331, 345
BseGI GGATG 2 cut(s) 326, 553
BseLI CCNNNNNNNGG 4 cut(s) 539, 566, 587, 623
BseMI GCAATG 1 cut(s) 446
BseMII CTCAG 2 cut(s) 28, 698
BseNI ACTGG 1 cut(s) 521
BseRI GAGGAG 2 cut(s) 735, 808
BseXI GCAGC 5 cut(s) 95, 133, 376, 476, 487
BseYI CCCAGC 1 cut(s) 68
BsgI GTGCAG 2 cut(s) 87, 383
BshFI GGCC 3 cut(s) 377, 493, 822
BsiHKAI GWGCWC 2 cut(s) 343, 574
BsiSI CCGG 1 cut(s) 638
BslI CCNNNNNNNGG 4 cut(s) 539, 566, 587, 623
BsmAI GTCTC 2 cut(s) 200, 808
BsmBI CGTCTC 1 cut(s) 808
BsnI GGCC 3 cut(s) 377, 493, 822
Bso31I GGTCTC 1 cut(s) 200
Bsp1286I GDGCHC 2 cut(s) 343, 574
Bsp143I GATC 1 cut(s) 691
BspACI CCGC 1 cut(s) 698
BspANI GGCC 3 cut(s) 377, 493, 822
BspCNI CTCAG 2 cut(s) 27, 697
BspHI TCATGA 1 cut(s) 753
BspLI GGNNCC 5 cut(s) 321, 492, 627, 678, 821
BspMI ACCTGC 1 cut(s) 331
BspPI GGATC 1 cut(s) 699
BspTNI GGTCTC 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 446
BsrI ACTGG 1 cut(s) 521
BssECI CCNNGG 2 cut(s) 331, 345
BssMI GATC 1 cut(s) 691
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 2 cut(s) 347, 534
Bst4CI ACNGT 2 cut(s) 53, 211
BstC8I GCNNGC 5 cut(s) 106, 375, 422, 426, 527
BstDEI CTNAG 2 cut(s) 14, 684
BstF5I GGATG 2 cut(s) 326, 553
BstKTI GATC 1 cut(s) 694
BstMAI GTCTC 2 cut(s) 200, 808
BstMBI GATC 1 cut(s) 691
BstMWI GCNNNNNNNGC 5 cut(s) 74, 290, 370, 490, 782
BstNI CCWGG 2 cut(s) 347, 534
BstNSI RCATGY 3 cut(s) 424, 529, 616
BstSCI CCNGG 2 cut(s) 345, 532
BstV1I GCAGC 5 cut(s) 95, 133, 376, 476, 487
BstV2I GAAGAC 2 cut(s) 203, 452
BstX2I RGATCY 1 cut(s) 691
BstYI RGATCY 1 cut(s) 691
BsuI GTATCC 1 cut(s) 13
BsuRI GGCC 3 cut(s) 377, 493, 822
BtsCI GGATG 2 cut(s) 326, 553
BveI ACCTGC 1 cut(s) 331
Cac8I GCNNGC 5 cut(s) 106, 375, 422, 426, 527
CaiI CAGNNNCTG 1 cut(s) 373
CciI TCATGA 1 cut(s) 753
Cfr13I GGNCC 5 cut(s) 491, 602, 626, 740, 820
Csp6I GTAC 1 cut(s) 57
CviAII CATG 9 cut(s) 182, 299, 421, 478, 526, 538, 544, 613, 754
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 2 cut(s) 14, 684
DpnI GATC 1 cut(s) 693
DpnII GATC 1 cut(s) 691
Eco130I CCWWGG 1 cut(s) 331
Eco31I GGTCTC 1 cut(s) 200
Eco47I GGWCC 3 cut(s) 602, 626, 740
Eco57I CTGAAG 2 cut(s) 215, 309
EcoO109I RGGNCCY 3 cut(s) 491, 602, 626
EcoRII CCWGG 2 cut(s) 345, 532
EcoT14I CCWWGG 1 cut(s) 331
EcoT22I ATGCAT 2 cut(s) 286, 486
ErhI CCWWGG 1 cut(s) 331
Esp3I CGTCTC 1 cut(s) 808
FaeI CATG 9 cut(s) 185, 302, 424, 481, 529, 541, 547, 616, 757
FatI CATG 9 cut(s) 181, 298, 420, 477, 525, 537, 543, 612, 753
FauNDI CATATG 2 cut(s) 486, 565
Fnu4HI GCNGC 5 cut(s) 109, 147, 365, 465, 501
FokI GGATG 2 cut(s) 313, 560
Fsp4HI GCNGC 5 cut(s) 109, 147, 365, 465, 501
FspBI CTAG 1 cut(s) 599
GluI GCNGC 5 cut(s) 109, 147, 365, 465, 501
GsaI CCCAGC 1 cut(s) 72
HaeIII GGCC 3 cut(s) 377, 493, 822
HapII CCGG 1 cut(s) 638
Hin1II CATG 9 cut(s) 185, 302, 424, 481, 529, 541, 547, 616, 757
HinfI GANTC 7 cut(s) 10, 33, 41, 98, 124, 302, 641
HpaII CCGG 1 cut(s) 638
Hpy188I TCNGA 5 cut(s) 195, 289, 687, 740, 780
Hpy188III TCNNGA 3 cut(s) 89, 455, 754
HpyAV CCTTC 2 cut(s) 138, 504
HpyCH4III ACNGT 2 cut(s) 53, 211
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 290, 370, 490, 782
HpyF3I CTNAG 2 cut(s) 14, 684
Hsp92II CATG 9 cut(s) 185, 302, 424, 481, 529, 541, 547, 616, 757
Kzo9I GATC 1 cut(s) 691
LmnI GCTCC 2 cut(s) 346, 577
Lsp1109I GCAGC 5 cut(s) 95, 133, 376, 476, 487
LweI GCATC 6 cut(s) 158, 271, 293, 335, 471, 657
MaeI CTAG 1 cut(s) 599
MaeIII GTNAC 1 cut(s) 47
MalI GATC 1 cut(s) 693
MboI GATC 1 cut(s) 691
MboII GAAGA 5 cut(s) 197, 208, 368, 421, 457
MflI RGATCY 1 cut(s) 691
MhlI GDGCHC 2 cut(s) 343, 574
MluCI AATT 1 cut(s) 767
MlyI GAGTC 5 cut(s) 4, 50, 107, 311, 635
MmeI TCCRAC 1 cut(s) 718
Mph1103I ATGCAT 2 cut(s) 286, 486
MslI CAYNNNNRTG 1 cut(s) 542
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 1 cut(s) 638
MspR9I CCNGG 2 cut(s) 347, 534
MvaI CCWGG 2 cut(s) 347, 534
MwoI GCNNNNNNNGC 5 cut(s) 74, 290, 370, 490, 782
NdeI CATATG 2 cut(s) 486, 565
NdeII GATC 1 cut(s) 691
NlaIII CATG 9 cut(s) 185, 302, 424, 481, 529, 541, 547, 616, 757
NlaIV GGNNCC 5 cut(s) 321, 492, 627, 678, 821
NsiI ATGCAT 2 cut(s) 286, 486
NspI RCATGY 3 cut(s) 424, 529, 616
PaeI GCATGC 2 cut(s) 424, 529
PagI TCATGA 1 cut(s) 753
PfeI GAWTC 2 cut(s) 33, 124
PflMI CCANNNNNTGG 1 cut(s) 566
PkrI GCNGC 5 cut(s) 110, 148, 366, 466, 502
PleI GAGTC 5 cut(s) 4, 49, 106, 310, 635
PpsI GAGTC 5 cut(s) 4, 49, 106, 310, 635
PpuMI RGGWCCY 2 cut(s) 602, 626
PsiI TTATAA 1 cut(s) 507
Psp5II RGGWCCY 2 cut(s) 602, 626
Psp6I CCWGG 2 cut(s) 345, 532
PspFI CCCAGC 1 cut(s) 68
PspGI CCWGG 2 cut(s) 345, 532
PspN4I GGNNCC 5 cut(s) 321, 492, 627, 678, 821
PspPI GGNCC 5 cut(s) 491, 602, 626, 740, 820
PspPPI RGGWCCY 2 cut(s) 602, 626
PsrI GAACNNNNNNTAC 2 cut(s) 213, 245
PstNI CAGNNNCTG 1 cut(s) 373
PsuI RGATCY 1 cut(s) 691
PvuII CAGCTG 1 cut(s) 467
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
RseI CAYNNNNRTG 1 cut(s) 542
SatI GCNGC 5 cut(s) 109, 147, 365, 465, 501
Sau3AI GATC 1 cut(s) 691
Sau96I GGNCC 5 cut(s) 491, 602, 626, 740, 820
ScaI AGTACT 1 cut(s) 58
SchI GAGTC 5 cut(s) 4, 50, 107, 311, 635
ScrFI CCNGG 2 cut(s) 347, 534
SduI GDGCHC 2 cut(s) 343, 574
SfaNI GCATC 6 cut(s) 158, 271, 293, 335, 471, 657
SinI GGWCC 3 cut(s) 602, 626, 740
SmiMI CAYNNNNRTG 1 cut(s) 542
SmlI CTYRAG 1 cut(s) 453
SmoI CTYRAG 1 cut(s) 453
SphI GCATGC 2 cut(s) 424, 529
Sse9I AATT 1 cut(s) 767
SsiI CCGC 1 cut(s) 698
SspMI CTAG 1 cut(s) 599
StyD4I CCNGG 2 cut(s) 345, 532
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 2 cut(s) 53, 211
TaqI TCGA 1 cut(s) 31
TasI AATT 1 cut(s) 767
TatI WGTACW 1 cut(s) 56
TfiI GAWTC 2 cut(s) 33, 124
TseI GCWGC 5 cut(s) 108, 146, 364, 464, 500
TspDTI ATGAA 5 cut(s) 198, 369, 447, 737, 746
Van91I CCANNNNNTGG 1 cut(s) 566
VpaK11BI GGWCC 3 cut(s) 602, 626, 740
XapI RAATTY 1 cut(s) 767
XceI RCATGY 3 cut(s) 424, 529, 616
XspI CTAG 1 cut(s) 599
ZrmI AGTACT 1 cut(s) 58
Zsp2I ATGCAT 2 cut(s) 286, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.