Rroxscaffold_7G00188010

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001377
Physical Location & Seq
Reverse (-)
27453317 .. 27453774
458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00188010.1

Sequence Viewer

Length: 210 bp
ATGGCGACGACGATGTCAACGACATTGATATGTGGTTGTCTCCGAGTGCCTCATAGTCATTATATTCAACAACGCCCTACAAATGGTGATCCAAACTATGACATCAAAAGAGTGAAGCCACCCACCGGCATTCCCAAGTCCATGTTGATAGCAACCCCGGATGGCTCATATGCACCGCCGAGTGGTAGTAGCCGTATTGAGGCCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

69

Amino Acids

7.46

Weight (kDa)

8.74

Isoelectric Point (pI)

61.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
AciI CCGC 1 cut(s) 176
AclWI GGATC 1 cut(s) 83
AfiI CCNNNNNNNGG 4 cut(s) 83, 125, 182, 199
AgsI TTSAA 1 cut(s) 68
Alw26I GTCTC 1 cut(s) 44
AlwI GGATC 1 cut(s) 83
AoxI GGCC 1 cut(s) 201
AsuC2I CCSGG 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 98
BccI CCATC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 177
BcnI CCSGG 1 cut(s) 158
BcoDI GTCTC 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 158
BpuMI CCSGG 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 4 cut(s) 83, 125, 182, 199
Bse118I RCCGGY 1 cut(s) 125
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 166
BseLI CCNNNNNNNGG 4 cut(s) 83, 125, 182, 199
BshFI GGCC 1 cut(s) 203
BsiSI CCGG 2 cut(s) 126, 158
BslI CCNNNNNNNGG 4 cut(s) 83, 125, 182, 199
BsmAI GTCTC 1 cut(s) 44
BsmI GAATGC 1 cut(s) 129
BsnI GGCC 1 cut(s) 203
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 1 cut(s) 176
BspANI GGCC 1 cut(s) 203
BspPI GGATC 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 125
BssAI RCCGGY 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 1 cut(s) 88
BstF5I GGATG 1 cut(s) 166
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 44
BstMBI GATC 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 156
BsuRI GGCC 1 cut(s) 203
BtsCI GGATG 1 cut(s) 166
Cfr10I RCCGGY 1 cut(s) 125
CviAII CATG 1 cut(s) 142
CviJI RGCY 4 cut(s) 118, 165, 192, 203
CviKI_1 RGCY 4 cut(s) 118, 165, 192, 203
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
FaeI CATG 1 cut(s) 145
FaiI YATR 7 cut(s) 31, 54, 63, 99, 143, 169, 171
FatI CATG 1 cut(s) 141
FauNDI CATATG 1 cut(s) 169
FokI GGATG 1 cut(s) 173
HaeIII GGCC 1 cut(s) 203
HapII CCGG 2 cut(s) 126, 158
Hin1II CATG 1 cut(s) 145
HincII GTYRAC 1 cut(s) 18
HindII GTYRAC 1 cut(s) 18
HpaII CCGG 2 cut(s) 126, 158
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 18
Hpy99I CGWCG 2 cut(s) 10, 13
HpyCH4V TGCA 1 cut(s) 173
Hsp92II CATG 1 cut(s) 145
Kzo9I GATC 1 cut(s) 88
LpnPI CCDG 2 cut(s) 139, 171
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MnlI CCTC 2 cut(s) 60, 193
MslI CAYNNNNRTG 1 cut(s) 28
MspI CCGG 2 cut(s) 126, 158
MspR9I CCNGG 1 cut(s) 158
Mva1269I GAATGC 1 cut(s) 129
NciI CCSGG 1 cut(s) 158
NdeI CATATG 1 cut(s) 169
NdeII GATC 1 cut(s) 88
NlaIII CATG 1 cut(s) 145
NmeAIII GCCGAG 1 cut(s) 204
PcsI WCGNNNNNNNCGW 1 cut(s) 17
PctI GAATGC 1 cut(s) 129
PflFI GACNNNGTC 1 cut(s) 13
PsyI GACNNNGTC 1 cut(s) 13
RseI CAYNNNNRTG 1 cut(s) 28
Sau3AI GATC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 158
SgeI CNNG 7 cut(s) 56, 138, 148, 154, 169, 170, 192
SmiMI CAYNNNNRTG 1 cut(s) 28
SsiI CCGC 1 cut(s) 176
StyD4I CCNGG 1 cut(s) 156
Tth111I GACNNNGTC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.