Rmu_sc0000545.1_g000019

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000545.1
OG0001377
Physical Location & Seq
Forward (+)
72496 .. 75186
2691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000545.1_g000019.1.cds

Sequence Viewer

Length: 591 bp
atgatcctaacactcctccaaactcttttcccctgtgaccatcattgtcgtcttcacgttctcctctccagtcaacaatggcagacgatgatgtcaacgacattgatatggggtcattatatacagcactgccctacaaatggtgatccaaactatgacatcaaaagagtgaaaccacccactggcattcccaagtccatggtgatagcaaccccagatggctcttatgcactgtcgagtggtgcagtagctgtattgaggtcgaatgaggctgcttttgagaaagagatcgaaggtttactgtctatgcgttctgttggtgatttacctcctgagctacactgccccttgtgcaaggaagtgatgaaagatgctattttaatgagcaagtgttgctttaagagcttttgtgataagtatgatctactgccaaataagactctcagggataccatcaatcgaatcttggagtctggtaacaggagcactgataacgctgggagtgctttccaagttcaaggaaagaaaaggaaaaagaagacagttcgcatgccttcaaacggtggtcactcattgcagggagacttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

196

Amino Acids

21.84

Weight (kDa)

8.91

Isoelectric Point (pI)

50.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 91
AccB7I CCANNNNNTGG 1 cut(s) 182
AclWI GGATC 1 cut(s) 140
AfiI CCNNNNNNNGG 3 cut(s) 140, 182, 560
AgsI TTSAA 2 cut(s) 518, 558
AluBI AGCT 3 cut(s) 251, 337, 405
AluI AGCT 3 cut(s) 251, 337, 405
Alw21I GWGCWC 1 cut(s) 488
Alw26I GTCTC 1 cut(s) 576
AlwI GGATC 1 cut(s) 140
AlwNI CAGNNNCTG 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 272
AsuHPI GGTGA 3 cut(s) 155, 214, 332
BbsI GAAGAC 2 cut(s) 44, 545
Bbv12I GWGCWC 1 cut(s) 488
BbvI GCAGC 1 cut(s) 259
BccI CCATC 3 cut(s) 48, 212, 461
BciVI GTATCC 1 cut(s) 442
BcoDI GTCTC 1 cut(s) 576
BfaI CTAG 1 cut(s) 589
BfuI GTATCC 1 cut(s) 442
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
BmsI GCATC 1 cut(s) 361
BpiI GAAGAC 2 cut(s) 44, 545
BpmI CTGGAG 1 cut(s) 52
Bpu10I CCTNAGC 1 cut(s) 333
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 182, 560
Bse1I ACTGG 2 cut(s) 69, 187
Bse3DI GCAATG 1 cut(s) 572
BseDI CCNNGG 1 cut(s) 198
BseLI CCNNNNNNNGG 3 cut(s) 140, 182, 560
BseMI GCAATG 1 cut(s) 572
BseMII CTCAG 2 cut(s) 324, 457
BseNI ACTGG 2 cut(s) 69, 187
BseRI GAGGAG 2 cut(s) 5, 53
BseXI GCAGC 1 cut(s) 259
BseYI CCCAGC 1 cut(s) 497
BsgI GTGCAG 1 cut(s) 264
BsiHKAI GWGCWC 1 cut(s) 488
BslI CCNNNNNNNGG 3 cut(s) 140, 182, 560
BsmAI GTCTC 1 cut(s) 576
BsmI GAATGC 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 488
Bsp143I GATC 4 cut(s) 3, 145, 288, 421
Bsp19I CCATGG 1 cut(s) 198
BspCNI CTCAG 2 cut(s) 325, 456
BspPI GGATC 1 cut(s) 140
BsrDI GCAATG 1 cut(s) 572
BsrI ACTGG 2 cut(s) 69, 187
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 4 cut(s) 3, 145, 288, 421
BssT1I CCWWGG 1 cut(s) 198
Bst4CI ACNGT 4 cut(s) 234, 303, 544, 563
BstAPI GCANNNNNTGC 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 551
BstDEI CTNAG 2 cut(s) 333, 443
BstDSI CCRYGG 1 cut(s) 198
BstKTI GATC 4 cut(s) 6, 148, 291, 424
BstMAI GTCTC 1 cut(s) 576
BstMBI GATC 4 cut(s) 3, 145, 288, 421
BstMWI GCNNNNNNNGC 4 cut(s) 351, 393, 402, 503
BstNSI RCATGY 1 cut(s) 553
BstV1I GCAGC 1 cut(s) 259
BstV2I GAAGAC 2 cut(s) 44, 545
BstXI CCANNNNNNTGG 1 cut(s) 199
BsuI GTATCC 1 cut(s) 442
BtgI CCRYGG 1 cut(s) 198
BtsI GCAGTG 2 cut(s) 127, 340
BtsIMutI CAGTG 5 cut(s) 127, 180, 230, 340, 486
Cac8I GCNNGC 1 cut(s) 551
CaiI CAGNNNCTG 1 cut(s) 251
CviAII CATG 2 cut(s) 199, 550
CviJI RGCY 5 cut(s) 222, 251, 272, 337, 405
CviKI_1 RGCY 5 cut(s) 222, 251, 272, 337, 405
DdeI CTNAG 2 cut(s) 333, 443
DpnI GATC 4 cut(s) 5, 147, 290, 423
DpnII GATC 4 cut(s) 3, 145, 288, 421
DrdI GACNNNNNNGTC 1 cut(s) 91
DseDI GACNNNNNNGTC 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FaeI CATG 2 cut(s) 202, 553
FaiI YATR 9 cut(s) 109, 120, 122, 156, 200, 228, 308, 420, 551
FalI AAGNNNNNCTT 2 cut(s) 380, 412
FatI CATG 2 cut(s) 198, 549
Fnu4HI GCNGC 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 273
FspBI CTAG 1 cut(s) 589
GluI GCNGC 1 cut(s) 273
GsaI CCCAGC 1 cut(s) 501
GsuI CTGGAG 1 cut(s) 52
Hin1II CATG 2 cut(s) 202, 553
HincII GTYRAC 2 cut(s) 74, 96
HindII GTYRAC 2 cut(s) 74, 96
HinfI GANTC 3 cut(s) 439, 462, 470
HphI GGTGA 3 cut(s) 155, 214, 332
Hpy166II GTNNAC 3 cut(s) 74, 96, 299
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 3 cut(s) 74, 96, 299
HpyAV CCTTC 2 cut(s) 287, 564
HpyCH4III ACNGT 4 cut(s) 234, 303, 544, 563
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 4 cut(s) 230, 245, 354, 577
HpyF10VI GCNNNNNNNGC 4 cut(s) 351, 393, 402, 503
HpyF3I CTNAG 2 cut(s) 333, 443
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 2 cut(s) 202, 553
Kzo9I GATC 4 cut(s) 3, 145, 288, 421
LmnI GCTCC 1 cut(s) 483
Lsp1109I GCAGC 1 cut(s) 259
LweI GCATC 1 cut(s) 361
MaeI CTAG 1 cut(s) 589
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 3 cut(s) 35, 476, 566
MalI GATC 4 cut(s) 5, 147, 290, 423
MboI GATC 4 cut(s) 3, 145, 288, 421
MboII GAAGA 2 cut(s) 44, 550
MhlI GDGCHC 1 cut(s) 488
MlyI GAGTC 2 cut(s) 433, 479
MnlI CCTC 5 cut(s) 26, 74, 252, 262, 339
MseI TTAA 2 cut(s) 380, 399
MslI CAYNNNNRTG 1 cut(s) 106
Mva1269I GAATGC 1 cut(s) 186
MwoI GCNNNNNNNGC 4 cut(s) 351, 393, 402, 503
NcoI CCATGG 1 cut(s) 198
NdeII GATC 4 cut(s) 3, 145, 288, 421
NlaIII CATG 2 cut(s) 202, 553
NmuCI GTSAC 2 cut(s) 35, 566
NspI RCATGY 1 cut(s) 553
PaeI GCATGC 1 cut(s) 553
PctI GAATGC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 462
PflMI CCANNNNNTGG 1 cut(s) 182
PkrI GCNGC 1 cut(s) 274
PleI GAGTC 2 cut(s) 433, 478
PpsI GAGTC 2 cut(s) 433, 478
PspFI CCCAGC 1 cut(s) 497
PstNI CAGNNNCTG 1 cut(s) 251
RseI CAYNNNNRTG 1 cut(s) 106
SaqAI TTAA 2 cut(s) 380, 399
SatI GCNGC 1 cut(s) 273
Sau3AI GATC 4 cut(s) 3, 145, 288, 421
SchI GAGTC 2 cut(s) 433, 479
SduI GDGCHC 1 cut(s) 488
SetI ASST 7 cut(s) 60, 253, 263, 298, 331, 339, 407
SfaNI GCATC 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 106
SphI GCATGC 1 cut(s) 553
SspMI CTAG 1 cut(s) 589
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 4 cut(s) 234, 303, 544, 563
TaiI ACGT 1 cut(s) 60
TaqI TCGA 4 cut(s) 236, 263, 291, 460
TfiI GAWTC 1 cut(s) 462
Tru1I TTAA 2 cut(s) 380, 399
Tru9I TTAA 2 cut(s) 380, 399
TscAI CASTG 5 cut(s) 134, 187, 237, 347, 493
TseFI GTSAC 2 cut(s) 35, 566
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 2 cut(s) 35, 566
TspDTI ATGAA 1 cut(s) 380
TspRI CASTG 5 cut(s) 134, 187, 237, 347, 493
Van91I CCANNNNNTGG 1 cut(s) 182
XceI RCATGY 1 cut(s) 553
XspI CTAG 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.