Rh6BG242200

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001377
Physical Location & Seq
Reverse (-)
45032384 .. 45071462
39079 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG242200.1

Sequence Viewer

Length: 672 bp
ATGGGAAACCTCATAGTTCGAATACATCTTACCAACTCACACTGCCCTACAAATGGTGATCCAAACTATGACATCAAAAGAGTGAAACCATCCACTGGCATTCCCAAGTCCATGGTGATAGCAACCCTAGATGGCTCATATGCACTGCCGAGTGGTGCAGTAGCTGTATTGAGGCCGAATGAGGCTTCTTTTGAGAAAGAGATCGAAGGTTTACCGTCTACGCGTTCTGTTGGTGATTTACCACCTGAGCTACACTGCCCCTTGTGCAAGGAAGTGATGAAAGATGCTGTTTTAACGAGCAAGTGTTGCTTTAAGAGCTTTTGTGATAAGTGTATCAGGAATTACATTAGCTCAAAGTCAGTGTGTGTCTGTGGGGCTACAAATACACTTGCAGATGATCTACTACCAAATAAGACTCTCAGGGATACCATTAATCGAATCGTGGAGTCTGGTAACAGTAGCATTGATAACGCTGGGAGTGCTTTCCAAGTTCAAGGAAAGAAAAGGAAAAAGAAGAAAGTTCGCATGCCTTCAAACGTATCAGCAGCTGCAGAAGCTAATCAGCGGCGCCTCACCACCCTATCCTTATCCGACGAAGATCATGATGGATGCAAAGGGCAGGGCATTGTTGAGATGGATAAGATGCATGGTTTTAGCATCACCACGTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

223

Amino Acids

24.19

Weight (kDa)

8.77

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 567
AccB7I CCANNNNNTGG 1 cut(s) 95
AccI GTMKAC 1 cut(s) 218
AccII CGCG 1 cut(s) 223
AciI CCGC 1 cut(s) 565
AclWI GGATC 1 cut(s) 53
AcyI GRCGYC 1 cut(s) 568
AfiI CCNNNNNNNGG 2 cut(s) 53, 95
AflIII ACRYGT 1 cut(s) 221
AgsI TTSAA 2 cut(s) 494, 534
AluBI AGCT 6 cut(s) 164, 250, 318, 351, 548, 557
AluI AGCT 6 cut(s) 164, 250, 318, 351, 548, 557
AlwI GGATC 1 cut(s) 53
AlwNI CAGNNNCTG 2 cut(s) 164, 548
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 2 cut(s) 545, 548
AseI ATTAAT 1 cut(s) 432
AspLEI GCGC 1 cut(s) 570
AsuHPI GGTGA 5 cut(s) 68, 127, 245, 565, 652
AsuII TTCGAA 1 cut(s) 19
BanI GGYRCC 1 cut(s) 567
BbvI GCAGC 2 cut(s) 535, 557
BccI CCATC 4 cut(s) 97, 125, 599, 628
BciVI GTATCC 1 cut(s) 418
BfaI CTAG 1 cut(s) 128
BfmI CTRYAG 1 cut(s) 549
BfoI RGCGCY 1 cut(s) 571
BfuI GTATCC 1 cut(s) 418
BisI GCNGC 3 cut(s) 546, 549, 566
BlsI GCNGC 3 cut(s) 547, 550, 567
BmiI GGNNCC 1 cut(s) 569
BmsI GCATC 4 cut(s) 274, 599, 633, 666
Bpu10I CCTNAGC 1 cut(s) 246
Bpu14I TTCGAA 1 cut(s) 19
BsaAI YACGTR 1 cut(s) 666
BsaHI GRCGYC 1 cut(s) 568
BsaJI CCNNGG 1 cut(s) 111
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 95
Bse1I ACTGG 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 2 cut(s) 89, 614
BseLI CCNNNNNNNGG 2 cut(s) 53, 95
BseMII CTCAG 2 cut(s) 237, 433
BseNI ACTGG 1 cut(s) 100
BseXI GCAGC 2 cut(s) 535, 557
BseYI CCCAGC 1 cut(s) 473
BsgI GTGCAG 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 223
BshFI GGCC 1 cut(s) 175
BshNI GGYRCC 1 cut(s) 567
BslI CCNNNNNNNGG 2 cut(s) 53, 95
BsmI GAATGC 1 cut(s) 99
BsnI GGCC 1 cut(s) 175
Bsp119I TTCGAA 1 cut(s) 19
Bsp143I GATC 4 cut(s) 58, 201, 397, 598
Bsp19I CCATGG 1 cut(s) 111
BspACI CCGC 1 cut(s) 565
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 2 cut(s) 238, 432
BspFNI CGCG 1 cut(s) 223
BspHI TCATGA 1 cut(s) 601
BspLI GGNNCC 1 cut(s) 569
BspMAI CTGCAG 1 cut(s) 553
BspPI GGATC 1 cut(s) 53
BspT104I TTCGAA 1 cut(s) 19
BspT107I GGYRCC 1 cut(s) 567
BsrI ACTGG 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 4 cut(s) 58, 201, 397, 598
BssNI GRCGYC 1 cut(s) 568
BssT1I CCWWGG 1 cut(s) 111
Bst4CI ACNGT 2 cut(s) 216, 458
BstACI GRCGYC 1 cut(s) 568
BstAPI GCANNNNNTGC 1 cut(s) 306
BstBAI YACGTR 1 cut(s) 666
BstBI TTCGAA 1 cut(s) 19
BstC8I GCNNGC 1 cut(s) 527
BstDEI CTNAG 2 cut(s) 246, 419
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 2 cut(s) 89, 614
BstFNI CGCG 1 cut(s) 223
BstH2I RGCGCY 1 cut(s) 571
BstHHI GCGC 1 cut(s) 570
BstKTI GATC 4 cut(s) 61, 204, 400, 601
BstMBI GATC 4 cut(s) 58, 201, 397, 598
BstMWI GCNNNNNNNGC 5 cut(s) 264, 306, 315, 479, 554
BstNSI RCATGY 1 cut(s) 529
BstSFI CTRYAG 1 cut(s) 549
BstUI CGCG 1 cut(s) 223
BstV1I GCAGC 2 cut(s) 535, 557
BstXI CCANNNNNNTGG 1 cut(s) 112
BsuI GTATCC 1 cut(s) 418
BsuRI GGCC 1 cut(s) 175
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 2 cut(s) 89, 614
BtsI GCAGTG 3 cut(s) 40, 143, 253
BtsIMutI CAGTG 5 cut(s) 40, 93, 143, 253, 366
Cac8I GCNNGC 1 cut(s) 527
CaiI CAGNNNCTG 2 cut(s) 164, 548
CciI TCATGA 1 cut(s) 601
CfoI GCGC 1 cut(s) 570
CviAII CATG 4 cut(s) 112, 526, 602, 647
DdeI CTNAG 2 cut(s) 246, 419
DinI GGCGCC 1 cut(s) 569
DpnI GATC 4 cut(s) 60, 203, 399, 600
DpnII GATC 4 cut(s) 58, 201, 397, 598
Eco130I CCWWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 111
EcoT22I ATGCAT 1 cut(s) 648
EgeI GGCGCC 1 cut(s) 569
EheI GGCGCC 1 cut(s) 569
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 4 cut(s) 115, 529, 605, 650
FaiI YATR 8 cut(s) 14, 69, 113, 139, 141, 527, 603, 648
FalI AAGNNNNNCTT 2 cut(s) 293, 325
FatI CATG 4 cut(s) 111, 525, 601, 646
FauNDI CATATG 1 cut(s) 139
FblI GTMKAC 1 cut(s) 218
Fnu4HI GCNGC 3 cut(s) 546, 549, 566
FokI GGATG 2 cut(s) 76, 621
Fsp4HI GCNGC 3 cut(s) 546, 549, 566
FspBI CTAG 1 cut(s) 128
GlaI GCGC 1 cut(s) 569
GluI GCNGC 3 cut(s) 546, 549, 566
GsaI CCCAGC 1 cut(s) 477
HaeII RGCGCY 1 cut(s) 571
HaeIII GGCC 1 cut(s) 175
HhaI GCGC 1 cut(s) 570
Hin1I GRCGYC 1 cut(s) 568
Hin1II CATG 4 cut(s) 115, 529, 605, 650
Hin6I GCGC 1 cut(s) 568
HinP1I GCGC 1 cut(s) 568
HinfI GANTC 3 cut(s) 415, 438, 446
HphI GGTGA 5 cut(s) 68, 127, 245, 565, 652
Hpy166II GTNNAC 2 cut(s) 212, 219
Hpy188I TCNGA 1 cut(s) 592
Hpy188III TCNNGA 2 cut(s) 337, 602
Hpy8I GTNNAC 2 cut(s) 212, 219
Hpy99I CGWCG 1 cut(s) 596
HpyAV CCTTC 2 cut(s) 200, 540
HpyCH4III ACNGT 2 cut(s) 216, 458
HpyCH4IV ACGT 2 cut(s) 537, 665
HpyCH4V TGCA 7 cut(s) 143, 158, 267, 392, 551, 612, 646
HpyF10VI GCNNNNNNNGC 5 cut(s) 264, 306, 315, 479, 554
HpyF3I CTNAG 2 cut(s) 246, 419
HpySE526I ACGT 2 cut(s) 537, 665
Hsp92I GRCGYC 1 cut(s) 568
Hsp92II CATG 4 cut(s) 115, 529, 605, 650
HspAI GCGC 1 cut(s) 568
KasI GGCGCC 1 cut(s) 567
Kzo9I GATC 4 cut(s) 58, 201, 397, 598
LpnPI CCDG 7 cut(s) 81, 258, 322, 406, 435, 459, 605
Lsp1109I GCAGC 2 cut(s) 535, 557
LweI GCATC 4 cut(s) 274, 599, 633, 666
MaeI CTAG 1 cut(s) 128
MaeII ACGT 2 cut(s) 537, 665
MaeIII GTNAC 1 cut(s) 452
MalI GATC 4 cut(s) 60, 203, 399, 600
MboI GATC 4 cut(s) 58, 201, 397, 598
MboII GAAGA 2 cut(s) 526, 608
MluCI AATT 1 cut(s) 340
MluI ACGCGT 1 cut(s) 221
Mly113I GGCGCC 1 cut(s) 568
MlyI GAGTC 2 cut(s) 409, 455
MmeI TCCRAC 1 cut(s) 615
MnlI CCTC 4 cut(s) 20, 165, 175, 581
Mph1103I ATGCAT 1 cut(s) 648
MseI TTAA 3 cut(s) 293, 312, 432
MspA1I CMGCKG 2 cut(s) 548, 565
Mva1269I GAATGC 1 cut(s) 99
MvnI CGCG 1 cut(s) 223
MwoI GCNNNNNNNGC 5 cut(s) 264, 306, 315, 479, 554
NarI GGCGCC 1 cut(s) 568
NcoI CCATGG 1 cut(s) 111
NdeI CATATG 1 cut(s) 139
NdeII GATC 4 cut(s) 58, 201, 397, 598
NlaIII CATG 4 cut(s) 115, 529, 605, 650
NlaIV GGNNCC 1 cut(s) 569
NmeAIII GCCGAG 1 cut(s) 174
NsiI ATGCAT 1 cut(s) 648
NspI RCATGY 1 cut(s) 529
NspV TTCGAA 1 cut(s) 19
PaeI GCATGC 1 cut(s) 529
PagI TCATGA 1 cut(s) 601
PctI GAATGC 1 cut(s) 99
PfeI GAWTC 1 cut(s) 438
PflMI CCANNNNNTGG 1 cut(s) 95
PkrI GCNGC 3 cut(s) 547, 550, 567
PleI GAGTC 2 cut(s) 409, 454
PluTI GGCGCC 1 cut(s) 571
PpsI GAGTC 2 cut(s) 409, 454
Ppu21I YACGTR 1 cut(s) 666
PshBI ATTAAT 1 cut(s) 432
PspFI CCCAGC 1 cut(s) 473
PspN4I GGNNCC 1 cut(s) 569
PstI CTGCAG 1 cut(s) 553
PstNI CAGNNNCTG 2 cut(s) 164, 548
PvuII CAGCTG 1 cut(s) 548
SaqAI TTAA 3 cut(s) 293, 312, 432
SatI GCNGC 3 cut(s) 546, 549, 566
Sau3AI GATC 4 cut(s) 58, 201, 397, 598
SchI GAGTC 2 cut(s) 409, 455
SfaNI GCATC 4 cut(s) 274, 599, 633, 666
SfcI CTRYAG 1 cut(s) 549
SfoI GGCGCC 1 cut(s) 569
SfuI TTCGAA 1 cut(s) 19
SphI GCATGC 1 cut(s) 529
Sse9I AATT 1 cut(s) 340
SsiI CCGC 1 cut(s) 565
SspDI GGCGCC 1 cut(s) 567
SspMI CTAG 1 cut(s) 128
StyI CCWWGG 1 cut(s) 111
TaaI ACNGT 2 cut(s) 216, 458
TaiI ACGT 2 cut(s) 540, 668
TaqI TCGA 3 cut(s) 19, 204, 436
TasI AATT 1 cut(s) 340
TauI GCSGC 1 cut(s) 568
TfiI GAWTC 1 cut(s) 438
Tru1I TTAA 3 cut(s) 293, 312, 432
Tru9I TTAA 3 cut(s) 293, 312, 432
TscAI CASTG 5 cut(s) 47, 100, 150, 260, 366
TseI GCWGC 2 cut(s) 545, 548
TspDTI ATGAA 1 cut(s) 293
TspRI CASTG 5 cut(s) 47, 100, 150, 260, 366
Van91I CCANNNNNTGG 1 cut(s) 95
VspI ATTAAT 1 cut(s) 432
XceI RCATGY 1 cut(s) 529
XmiI GTMKAC 1 cut(s) 218
XspI CTAG 1 cut(s) 128
Zsp2I ATGCAT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.