RLG00000002918

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001377
Physical Location & Seq
Forward (+)
41758757 .. 41760965
2209 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002918

Sequence Viewer

Length: 597 bp
ATGGCAGACGACGATGTCAACGACATTGATATGGGGTTGTCTCTGAGTCATTATATTCAGCACTGCCCTACAAATGGTGATCCAAACTATGACATCAAAAGAGTGAAACCACCCACTGGCATTCCCAAGTCCATGGTGATAGCAACCCCAGATGGCTCATATGCACTGCCGAGTGGTGCAGTAGCTGTATTGAGGCCGAATGAGGCTGCTTTTGAGAAAGAGATCGAAGGTTTACTGTCTACGCGTTCTGTTGGTGATTTACCACCTGAGCTACACTGCCCCTTGTGCAAGGAAGTGATGAAAGATGCTGTTTTAACGAGCAAGTGTTGCTTTAAGAGCTTTTGTGATAAGTATGATCTACTGCCAAATAAGACTCTCAGGGATACCATCAATCGAATCTTGGAGTCTGGTAACAGTAGCACTGATAACGCTGGGAGTGCTTTCCAAGTTCAAGGAAAGAAAAGGAAAAAGAAGAAAGTTCGCATGCCTTCAAACGGTGGTCACTCATTGCAGGGAGACTTCCAGGGAACTGAAATCGAGAATCACTTGGACCTATGTGCTATTTATCTTGATTTTGTTAATCTTGTTATAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

199

Amino Acids

21.7

Weight (kDa)

5.74

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 14
AccB7I CCANNNNNTGG 1 cut(s) 116
AccI GTMKAC 1 cut(s) 239
AccII CGCG 1 cut(s) 244
AclWI GGATC 1 cut(s) 74
AfiI CCNNNNNNNGG 3 cut(s) 74, 116, 494
AflIII ACRYGT 1 cut(s) 242
AgsI TTSAA 2 cut(s) 452, 492
AjnI CCWGG 1 cut(s) 522
AluBI AGCT 3 cut(s) 185, 271, 339
AluI AGCT 3 cut(s) 185, 271, 339
Alw26I GTCTC 2 cut(s) 45, 510
AlwI GGATC 1 cut(s) 74
AlwNI CAGNNNCTG 1 cut(s) 185
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 550
AsuHPI GGTGA 3 cut(s) 89, 148, 266
AvaII GGWCC 1 cut(s) 550
BbvI GCAGC 1 cut(s) 193
BccI CCATC 2 cut(s) 146, 395
BciT130I CCWGG 1 cut(s) 524
BciVI GTATCC 1 cut(s) 376
BcoDI GTCTC 2 cut(s) 45, 510
BfuI GTATCC 1 cut(s) 376
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 524
Bme18I GGWCC 1 cut(s) 550
BmgT120I GGNCC 1 cut(s) 550
BmrFI CCNGG 1 cut(s) 524
BmsI GCATC 1 cut(s) 295
Bpu10I CCTNAGC 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 132, 523
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 116, 494
Bse1I ACTGG 1 cut(s) 121
Bse3DI GCAATG 1 cut(s) 506
BseBI CCWGG 1 cut(s) 524
BseDI CCNNGG 2 cut(s) 132, 523
BseLI CCNNNNNNNGG 3 cut(s) 74, 116, 494
BseMI GCAATG 1 cut(s) 506
BseMII CTCAG 3 cut(s) 35, 258, 391
BseNI ACTGG 1 cut(s) 121
BseXI GCAGC 1 cut(s) 193
BseYI CCCAGC 1 cut(s) 431
BsgI GTGCAG 1 cut(s) 198
Bsh1236I CGCG 1 cut(s) 244
BshFI GGCC 1 cut(s) 196
BslI CCNNNNNNNGG 3 cut(s) 74, 116, 494
BsmAI GTCTC 2 cut(s) 45, 510
BsmI GAATGC 1 cut(s) 120
BsnI GGCC 1 cut(s) 196
Bsp143I GATC 3 cut(s) 79, 222, 355
Bsp19I CCATGG 1 cut(s) 132
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 3 cut(s) 36, 259, 390
BspFNI CGCG 1 cut(s) 244
BspPI GGATC 1 cut(s) 74
BsrDI GCAATG 1 cut(s) 506
BsrI ACTGG 1 cut(s) 121
BssECI CCNNGG 2 cut(s) 132, 523
BssMI GATC 3 cut(s) 79, 222, 355
BssT1I CCWWGG 1 cut(s) 132
Bst2UI CCWGG 1 cut(s) 524
Bst4CI ACNGT 3 cut(s) 237, 416, 497
BstAPI GCANNNNNTGC 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 485
BstDEI CTNAG 3 cut(s) 44, 267, 377
BstDSI CCRYGG 1 cut(s) 132
BstFNI CGCG 1 cut(s) 244
BstKTI GATC 3 cut(s) 82, 225, 358
BstMAI GTCTC 2 cut(s) 45, 510
BstMBI GATC 3 cut(s) 79, 222, 355
BstMWI GCNNNNNNNGC 4 cut(s) 285, 327, 336, 437
BstNI CCWGG 1 cut(s) 524
BstNSI RCATGY 1 cut(s) 487
BstSCI CCNGG 1 cut(s) 522
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 193
BstXI CCANNNNNNTGG 1 cut(s) 133
BsuI GTATCC 1 cut(s) 376
BsuRI GGCC 1 cut(s) 196
BtgI CCRYGG 1 cut(s) 132
BtsI GCAGTG 3 cut(s) 61, 164, 274
BtsIMutI CAGTG 5 cut(s) 61, 114, 164, 274, 420
Cac8I GCNNGC 1 cut(s) 485
CaiI CAGNNNCTG 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 550
CviAII CATG 2 cut(s) 133, 484
CviJI RGCY 6 cut(s) 156, 185, 196, 206, 271, 339
CviKI_1 RGCY 6 cut(s) 156, 185, 196, 206, 271, 339
DdeI CTNAG 3 cut(s) 44, 267, 377
DpnI GATC 3 cut(s) 81, 224, 357
DpnII GATC 3 cut(s) 79, 222, 355
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
Eco130I CCWWGG 1 cut(s) 132
Eco47I GGWCC 1 cut(s) 550
EcoRII CCWGG 1 cut(s) 522
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 2 cut(s) 136, 487
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FatI CATG 2 cut(s) 132, 483
FauNDI CATATG 1 cut(s) 160
FblI GTMKAC 1 cut(s) 239
Fnu4HI GCNGC 1 cut(s) 207
Fsp4HI GCNGC 1 cut(s) 207
GluI GCNGC 1 cut(s) 207
GsaI CCCAGC 1 cut(s) 435
HaeIII GGCC 1 cut(s) 196
Hin1II CATG 2 cut(s) 136, 487
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 5 cut(s) 46, 373, 396, 404, 541
HphI GGTGA 3 cut(s) 89, 148, 266
Hpy166II GTNNAC 3 cut(s) 19, 233, 240
Hpy188I TCNGA 1 cut(s) 45
Hpy188III TCNNGA 2 cut(s) 538, 569
Hpy8I GTNNAC 3 cut(s) 19, 233, 240
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 221, 498
HpyCH4III ACNGT 3 cut(s) 237, 416, 497
HpyCH4V TGCA 4 cut(s) 164, 179, 288, 511
HpyF10VI GCNNNNNNNGC 4 cut(s) 285, 327, 336, 437
HpyF3I CTNAG 3 cut(s) 44, 267, 377
Hsp92II CATG 2 cut(s) 136, 487
Kzo9I GATC 3 cut(s) 79, 222, 355
LpnPI CCDG 9 cut(s) 102, 162, 279, 364, 393, 417, 497, 509, 536
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 1 cut(s) 295
MaeIII GTNAC 2 cut(s) 410, 500
MalI GATC 3 cut(s) 81, 224, 357
MboI GATC 3 cut(s) 79, 222, 355
MboII GAAGA 1 cut(s) 484
MluI ACGCGT 1 cut(s) 242
MlyI GAGTC 3 cut(s) 55, 367, 413
MnlI CCTC 2 cut(s) 186, 196
MseI TTAA 3 cut(s) 314, 333, 579
MslI CAYNNNNRTG 1 cut(s) 29
MspR9I CCNGG 1 cut(s) 524
Mva1269I GAATGC 1 cut(s) 120
MvaI CCWGG 1 cut(s) 524
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 4 cut(s) 285, 327, 336, 437
NcoI CCATGG 1 cut(s) 132
NdeI CATATG 1 cut(s) 160
NdeII GATC 3 cut(s) 79, 222, 355
NlaIII CATG 2 cut(s) 136, 487
NmeAIII GCCGAG 1 cut(s) 195
NmuCI GTSAC 1 cut(s) 500
NspI RCATGY 1 cut(s) 487
PaeI GCATGC 1 cut(s) 487
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PctI GAATGC 1 cut(s) 120
PfeI GAWTC 2 cut(s) 396, 541
PflFI GACNNNGTC 1 cut(s) 14
PflMI CCANNNNNTGG 1 cut(s) 116
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 3 cut(s) 54, 367, 412
PpsI GAGTC 3 cut(s) 54, 367, 412
Psp6I CCWGG 1 cut(s) 522
PspFI CCCAGC 1 cut(s) 431
PspGI CCWGG 1 cut(s) 522
PspPI GGNCC 1 cut(s) 550
PstNI CAGNNNCTG 1 cut(s) 185
PsyI GACNNNGTC 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 29
SaqAI TTAA 3 cut(s) 314, 333, 579
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 3 cut(s) 79, 222, 355
Sau96I GGNCC 1 cut(s) 550
SchI GAGTC 3 cut(s) 55, 367, 413
ScrFI CCNGG 1 cut(s) 524
SetI ASST 6 cut(s) 187, 232, 268, 273, 341, 555
SfaNI GCATC 1 cut(s) 295
SinI GGWCC 1 cut(s) 550
SmiMI CAYNNNNRTG 1 cut(s) 29
SphI GCATGC 1 cut(s) 487
StyD4I CCNGG 1 cut(s) 522
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 3 cut(s) 237, 416, 497
TaqI TCGA 3 cut(s) 225, 394, 537
TfiI GAWTC 2 cut(s) 396, 541
Tru1I TTAA 3 cut(s) 314, 333, 579
Tru9I TTAA 3 cut(s) 314, 333, 579
TscAI CASTG 5 cut(s) 68, 121, 171, 281, 427
TseFI GTSAC 1 cut(s) 500
TseI GCWGC 1 cut(s) 206
Tsp45I GTSAC 1 cut(s) 500
TspDTI ATGAA 1 cut(s) 314
TspRI CASTG 5 cut(s) 68, 121, 171, 281, 427
Tth111I GACNNNGTC 1 cut(s) 14
Van91I CCANNNNNTGG 1 cut(s) 116
VpaK11BI GGWCC 1 cut(s) 550
XceI RCATGY 1 cut(s) 487
XmiI GTMKAC 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.