Rw7G018190

DWNN domain, A CCHC-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001377
Physical Location & Seq
Reverse (-)
19448204 .. 19455012
6809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G018190.1

Sequence Viewer

Length: 2673 bp
ATGGCGGTGTACTATAAATTTAAGAGTGCAAGAGATTATGATTCTATTGCTATGGACGGTCCTTTCATCTCAGTTGGTATACTCAAAGAAAAAATATTTGAATCCAAGCATTTAGGGAGGGGTACTGATTTCGACCTTGTGGTCACCAATGCCCAGACCAATGAAGAGTATCTTGATGAAGCAACGTTGATTCCAAAAAATACCTCAGTTTTAATTCGCCGTGTACCTGGACGCCCTCGCATGCCCATTGTTACTGATTCAGAGCATAAAGTAGAAGATATGGTGGAGAACATTGAACCCGAAAGGACTAGCTTTCTGGGAGCTGGTTCCTCTGTGAATCCTGAGCCAGACTGGGATGATCTTGGGGGTGATTTGTACGAAATTCCTGAAGTTTTGCCAGTGCCGCCTAGTTATGCGGTTCCGGATATTCCACCATCAAATAAAGCTGATGAAGATAGCAAGCTTAAGGCTTTAATCGACACTCCAGTATTAGACTGGCAACATCAAGGCGCTGACGGCTATGGTCCTGGTAGAGGTTTTGGCCGTGGTATGAATGGAAGAATGGGTGGACGTGGTTTTGGTCGAACAGGAGTGTTTGAGAAAAAAACACCTCCACAGGGCTATATATGTCACAGGTGTAAGGTTCCTGGTCATTATATTCAGCACTGCCCTACAAATGGTGATCCAAACTATGACATCAAAAGAGTGAAGCCACCCACTGGCATTCCCAAGTCCATGTTGATAGCAACCCCAGATGGCTCATATGCACTGCCGAGTGGTGCAGTAGCTGTATTGAGGCCGAATGAGGCTGCTTTTGAGAAAGAGATCGAAGGTTTACCATCTACACGTTCTGTTGGTGATTTACCACCTGAGCTACACTGCCCCTTGTGCAAGGAAGTGATGAAAGATGCTGTTTTAACGAGCAAGTGTTGCTTTAAGAGCTTTTGTGATAAGTGTATCAGGAATTACATTACCTCAAAGTCGGTGTGTGTCTGTGGGGCTACAAATACACTTGCAGATGATCTACTGCCAAATAAGACTCTCAGGGATACCATCAATCGAATCTTGGAGTCTGGTAACAGTAGTACTGATAACGCTGGGAGTGCTTTCCAAGTTCAAGATATGGAGTCTGCACGCTGCCCACAACCCAAGATTCCTTCCCCTACTTTATCTGCTGCATCAAAGGGAGAAAATAAGCCTTTACCTTTGCATGAAGAAGCTCTGAAGACACAGGAGACCGTAGATGAGGTAAGACCTGTTCCTGCCCCACAGCAGATGTTAGAGAATGTGAGGAATACAAAAGTAGCCGATGCATCTGAAGCTACCCATGAGTCAATGAGTGTAAAGGAACCTGCATCCCAAGGGAGTGCTCCCCTGGTTGATGAAGAAGTGCAGCAGAGGCTGGCCTCTGTGGAGGCAGGAAAGAAAAGGAAAAAGAAGAAAGTTCGCATGCCTGCAAATGAAATGCAATGGAAGACACCTCAAGACCTTGCAGCTGAAAACTACATGATGCATATGGGGCCTTCTGCTGCTTATAATCCATACTGGAATGGCATGCAACCTGGCATGGGCATGGATGGATATATGCCACCATATGGTGCTCCTATGCCATATATGGGGTATGGTCTAGGTCCTATGGACATGCCATTTGGGGGTCCTTTCCCACCGGACTCATTTGGTGGTCAAGGTTATATGATGCCTATGGTTCCACCTCAGAGGGATCTTGCGGACTTTGGTATGGGTATGGGAATGAATGGAATGAATGTCGGACCTCCTCCTATCATGAGCAGAGAGGAATTTGAGGCTCGGAAAGCTGATTTGAGGAGGAAGCGTGAAAATGAGAGACGGGGCCAAAGGGAGTTCTCCAAAGATCGGGAATATGGAAGGGATGTGAGTGGTGATGGCAATGTGCCTCCAATGAAGTCCAAATCAAAGTCGTCTCTAGCCCGATCTCCAAGCCCAGACTACAGGGATCGCGATCACCATCGCCAGCACCGATACGAGAGGTCCTCTCCAGAACCCAGAGACCGAGACCGAAGACCCTCACGTGACCTCGTCGAGCCTCTCCCGCCACCGCGCCCTCCTAAGAGAAAATCCGAGCACCACCACGACCGCGACCGCGACCGAGAGCCCCAGCGCGAAAGCGCCAAGGACTACGACTACTACGACGACGAGAAGCCCCGCCAGAAACGTCACCGTTCCGAGTCTTCCTCTTCGAAACCTGCCGCGACCGAAACTGCACCACCCTCCAAGCCCAGCTCTGCAAAGCTCGCTGCTGAAACTGCGTCAGCCAAGAGCAAGGCCAGCGTGTTCTCGAGGATTAGCTTCCCTGAAGGGGAAGCGAACAAGAAGAGGAAGAGCTCTCCTGCCGCGAAGGAGGTGGCGGGTGGTTCGAAAGAGCTGGCGAATGGCTTCCACGACCATGAGTATAGCAAGTCCACTAAGGTTGCTACTGCTGCTGCGGCTGTGAGTAGCAGCAGGAAGACTACTAGTGCTGTGAGTTCTCCTGCTGTGGACTATGAGTCAAGCGACGACGACAGGCACTTCAAGAGGAAGAAGAAGTCATCAAGGTACGCAGAGGCTTCGCCACCGGCGGTGCAGCAAGAGGAGGAGCCTTCGAGGCACTCTAGAGGTTCCAGGGATCGAGAGCGGGAGCATAGGCGGCAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

890

Amino Acids

98.68

Weight (kDa)

8.6

Isoelectric Point (pI)

56.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DWNN PF08783 3 - 76 3.4e-31 DWNN domain
zf-CCHC_2 PF13696 205 - 225 5e-09 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1536
AasI GACNNNNNNGTC 1 cut(s) 140
Acc36I ACCTGC 2 cut(s) 1360, 2230
AccB7I CCANNNNNTGG 2 cut(s) 719, 1595
AccBSI CCGCTC 1 cut(s) 2650
AccI GTMKAC 1 cut(s) 79
AccII CGCG 7 cut(s) 1977, 2077, 2115, 2121, 2139, 2228, 2372
AccIII TCCGGA 1 cut(s) 421
AclI AACGTT 1 cut(s) 185
AclWI GGATC 4 cut(s) 677, 1728, 1980, 2649
AcoI YGGCCR 1 cut(s) 541
AcsI RAATTY 3 cut(s) 17, 381, 1796
AcuI CTGAAG 4 cut(s) 408, 1244, 1338, 2352
AcvI CACGTG 1 cut(s) 2048
AcyI GRCGYC 1 cut(s) 232
AfaI GTAC 6 cut(s) 11, 124, 225, 377, 1087, 2573
AflII CTTAAG 1 cut(s) 464
AflIII ACRYGT 1 cut(s) 845
AgsI TTSAA 4 cut(s) 101, 296, 1118, 2548
AhdI GACNNNNNGTC 1 cut(s) 2521
AhlI ACTAGT 1 cut(s) 2489
AjiI CACGTC 1 cut(s) 572
AjnI CCWGG 6 cut(s) 226, 526, 646, 1374, 1561, 2636
Alw21I GWGCWC 4 cut(s) 1372, 1603, 2103, 2363
Alw26I GTCTC 5 cut(s) 1229, 1837, 1944, 2019, 2025
AlwI GGATC 4 cut(s) 677, 1728, 1980, 2649
AlwNI CAGNNNCTG 2 cut(s) 788, 1402
Ama87I CYCGRG 1 cut(s) 2314
Aor13HI TCCGGA 1 cut(s) 421
AoxI GGCC 6 cut(s) 541, 797, 1404, 1520, 1849, 2301
ApoI RAATTY 3 cut(s) 17, 381, 1796
ArsI GACNNNNNNTTYG 2 cut(s) 1631, 1663
Asp700I GAANNNNTTC 1 cut(s) 2411
AspLEI GCGC 4 cut(s) 512, 2079, 2139, 2147
AspS9I GGNCC 8 cut(s) 59, 524, 1520, 1631, 1655, 1769, 1849, 2007
AsuHPI GGTGA 7 cut(s) 136, 380, 692, 869, 1910, 1973, 2186
AsuII TTCGAA 2 cut(s) 2216, 2393
AvaI CYCGRG 1 cut(s) 2314
AvaII GGWCC 6 cut(s) 59, 524, 1631, 1655, 1769, 2007
BanII GRGCYC 2 cut(s) 2133, 2363
BbrPI CACGTG 1 cut(s) 2048
BbsI GAAGAC 5 cut(s) 1232, 1481, 2044, 2199, 2489
Bbv12I GWGCWC 4 cut(s) 1372, 1603, 2103, 2363
BccI CCATC 7 cut(s) 442, 749, 847, 1061, 1571, 1895, 1992
BceAI ACGGC 3 cut(s) 204, 528, 532
BcgI CGANNNNNNTGC 2 cut(s) 2565, 2599
BciT130I CCWGG 6 cut(s) 228, 528, 648, 1376, 1563, 2638
BciVI GTATCC 1 cut(s) 1042
BcoDI GTCTC 5 cut(s) 1229, 1837, 1944, 2019, 2025
BcuI ACTAGT 1 cut(s) 2489
BfaI CTAG 6 cut(s) 309, 408, 1628, 1943, 2490, 2628
BfmI CTRYAG 1 cut(s) 1966
BfoI RGCGCY 2 cut(s) 513, 2148
BfrI CTTAAG 1 cut(s) 464
BfuAI ACCTGC 2 cut(s) 1360, 2230
BfuI GTATCC 1 cut(s) 1042
BglI GCCNNNNNGGC 1 cut(s) 2620
BmcAI AGTACT 1 cut(s) 1087
Bme1390I CCNGG 6 cut(s) 228, 528, 648, 1376, 1563, 2638
Bme18I GGWCC 6 cut(s) 59, 524, 1631, 1655, 1769, 2007
BmeRI GACNNNNNGTC 1 cut(s) 2521
BmeT110I CYCGRG 1 cut(s) 2314
BmgBI CACGTC 1 cut(s) 572
BmgT120I GGNCC 8 cut(s) 59, 524, 1520, 1631, 1655, 1769, 1849, 2007
BmrFI CCNGG 6 cut(s) 228, 528, 648, 1376, 1563, 2638
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 7 cut(s) 898, 1187, 1300, 1322, 1364, 1500, 1686
BmuI ACTGGG 1 cut(s) 361
BpiI GAAGAC 5 cut(s) 1232, 1481, 2044, 2199, 2489
BplI GAGNNNNNCTC 6 cut(s) 1994, 2026, 1996, 2028, 2195, 2227
BpmI CTGGAG 2 cut(s) 468, 1998
Bpu10I CCTNAGC 2 cut(s) 342, 870
Bpu14I TTCGAA 2 cut(s) 2216, 2393
BpuEI CTTGAG 1 cut(s) 1467
BsaAI YACGTR 1 cut(s) 2048
BsaBI GATNNNNATC 2 cut(s) 1977, 1983
BsaHI GRCGYC 1 cut(s) 232
BsaI GGTCTC 3 cut(s) 1229, 2019, 2025
BsaJI CCNNGG 5 cut(s) 544, 1360, 1374, 2148, 2637
BsaWI WCCGGW 2 cut(s) 421, 1666
BsaXI ACNNNNNCTCC 2 cut(s) 1816, 1846
Bse118I RCCGGY 1 cut(s) 2590
Bse1I ACTGG 6 cut(s) 356, 398, 485, 500, 724, 1550
Bse3DI GCAATG 2 cut(s) 1475, 1912
Bse8I GATNNNNATC 2 cut(s) 1977, 1983
BseAI TCCGGA 1 cut(s) 421
BseBI CCWGG 6 cut(s) 228, 528, 648, 1376, 1563, 2638
BseDI CCNNGG 5 cut(s) 544, 1360, 1374, 2148, 2637
BseGI GGATG 4 cut(s) 361, 1355, 1582, 1894
BseJI GATNNNNATC 2 cut(s) 1977, 1983
BseMI GCAATG 2 cut(s) 1475, 1912
BseMII CTCAG 6 cut(s) 84, 219, 333, 861, 1057, 1727
BseNI ACTGG 6 cut(s) 356, 398, 485, 500, 724, 1550
BseRI GAGGAG 4 cut(s) 1764, 1837, 2621, 2624
BseYI CCCAGC 3 cut(s) 1097, 2133, 2255
BsgI GTGCAG 5 cut(s) 801, 1116, 1412, 2223, 2618
Bsh1236I CGCG 7 cut(s) 1977, 2077, 2115, 2121, 2139, 2228, 2372
Bsh1285I CGRYCG 4 cut(s) 2113, 2119, 2125, 2232
BshFI GGCC 6 cut(s) 543, 799, 1406, 1522, 1851, 2303
BsiEI CGRYCG 4 cut(s) 2113, 2119, 2125, 2232
BsiHKAI GWGCWC 4 cut(s) 1372, 1603, 2103, 2363
BsiHKCI CYCGRG 1 cut(s) 2314
BsiSI CCGG 3 cut(s) 422, 1667, 2591
BsmAI GTCTC 5 cut(s) 1229, 1837, 1944, 2019, 2025
BsmBI CGTCTC 2 cut(s) 1837, 1944
BsmI GAATGC 1 cut(s) 723
BsnI GGCC 6 cut(s) 543, 799, 1406, 1522, 1851, 2303
Bso31I GGTCTC 3 cut(s) 1229, 2019, 2025
BsoBI CYCGRG 1 cut(s) 2314
Bsp119I TTCGAA 2 cut(s) 2216, 2393
Bsp1286I GDGCHC 5 cut(s) 1372, 1603, 2103, 2133, 2363
Bsp13I TCCGGA 1 cut(s) 421
Bsp68I TCGCGA 1 cut(s) 1977
BspANI GGCC 6 cut(s) 543, 799, 1406, 1522, 1851, 2303
BspCNI CTCAG 6 cut(s) 83, 218, 334, 862, 1056, 1726
BspEI TCCGGA 1 cut(s) 421
BspFNI CGCG 7 cut(s) 1977, 2077, 2115, 2121, 2139, 2228, 2372
BspHI TCATGA 1 cut(s) 1782
BspMI ACCTGC 2 cut(s) 1360, 2230
BspPI GGATC 4 cut(s) 677, 1728, 1980, 2649
BspQI GCTCTTC 1 cut(s) 2351
BspT104I TTCGAA 2 cut(s) 2216, 2393
BspTI CTTAAG 1 cut(s) 464
BspTNI GGTCTC 3 cut(s) 1229, 2019, 2025
BsrBI CCGCTC 1 cut(s) 2650
BsrDI GCAATG 2 cut(s) 1475, 1912
BsrFI RCCGGY 1 cut(s) 2590
BsrI ACTGG 6 cut(s) 356, 398, 485, 500, 724, 1550
BssAI RCCGGY 1 cut(s) 2590
BssECI CCNNGG 5 cut(s) 544, 1360, 1374, 2148, 2637
BssNAI GTATAC 1 cut(s) 80
BssNI GRCGYC 1 cut(s) 232
BssT1I CCWWGG 2 cut(s) 1360, 2148
Bst1107I GTATAC 1 cut(s) 80
Bst2UI CCWGG 6 cut(s) 228, 528, 648, 1376, 1563, 2638
Bst4CI ACNGT 4 cut(s) 59, 1082, 1240, 2198
Bst6I CTCTTC 4 cut(s) 159, 2218, 2345, 2351
BstACI GRCGYC 1 cut(s) 232
BstAFI CTTAAG 1 cut(s) 464
BstAPI GCANNNNNTGC 1 cut(s) 930
BstBAI YACGTR 1 cut(s) 2048
BstBI TTCGAA 2 cut(s) 2216, 2393
BstDEI CTNAG 8 cut(s) 70, 205, 342, 870, 1043, 1713, 2085, 2442
BstDSI CCRYGG 1 cut(s) 544
BstEII GGTNACC 1 cut(s) 142
BstENI CCTNNNNNAGG 1 cut(s) 531
BstF5I GGATG 4 cut(s) 361, 1355, 1582, 1894
BstFNI CGCG 7 cut(s) 1977, 2077, 2115, 2121, 2139, 2228, 2372
BstH2I RGCGCY 2 cut(s) 513, 2148
BstHHI GCGC 4 cut(s) 512, 2079, 2139, 2147
BstMAI GTCTC 5 cut(s) 1229, 1837, 1944, 2019, 2025
BstMCI CGRYCG 4 cut(s) 2113, 2119, 2125, 2232
BstNI CCWGG 6 cut(s) 228, 528, 648, 1376, 1563, 2638
BstNSI RCATGY 4 cut(s) 244, 1453, 1558, 1645
BstPI GGTNACC 1 cut(s) 142
BstSCI CCNGG 6 cut(s) 226, 526, 646, 1374, 1561, 2636
BstSFI CTRYAG 1 cut(s) 1966
BstUI CGCG 7 cut(s) 1977, 2077, 2115, 2121, 2139, 2228, 2372
BstV2I GAAGAC 5 cut(s) 1232, 1481, 2044, 2199, 2489
BstX2I RGATCY 1 cut(s) 1720
BstYI RGATCY 1 cut(s) 1720
BstZ17I GTATAC 1 cut(s) 80
BsuI GTATCC 1 cut(s) 1042
BsuRI GGCC 6 cut(s) 543, 799, 1406, 1522, 1851, 2303
BtgI CCRYGG 1 cut(s) 544
BtgZI GCGATG 1 cut(s) 1970
BtrI CACGTC 1 cut(s) 572
BtsCI GGATG 4 cut(s) 361, 1355, 1582, 1894
BtsI GCAGTG 3 cut(s) 664, 767, 877
BtsIMutI CAGTG 5 cut(s) 405, 664, 717, 767, 877
BtuMI TCGCGA 1 cut(s) 1977
BveI ACCTGC 2 cut(s) 1360, 2230
CaiI CAGNNNCTG 2 cut(s) 788, 1402
CciI TCATGA 1 cut(s) 1782
CfoI GCGC 4 cut(s) 512, 2079, 2139, 2147
Cfr10I RCCGGY 1 cut(s) 2590
Cfr13I GGNCC 8 cut(s) 59, 524, 1520, 1631, 1655, 1769, 1849, 2007
CseI GACGC 2 cut(s) 240, 2274
Csp6I GTAC 6 cut(s) 10, 123, 224, 376, 1086, 2572
CspCI CAANNNNNGTGG 2 cut(s) 2428, 2463
CviQI GTAC 6 cut(s) 10, 123, 224, 376, 1086, 2572
DdeI CTNAG 8 cut(s) 70, 205, 342, 870, 1043, 1713, 2085, 2442
DrdI GACNNNNNNGTC 1 cut(s) 140
DriI GACNNNNNGTC 1 cut(s) 2521
DseDI GACNNNNNNGTC 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 541
Eam1104I CTCTTC 4 cut(s) 159, 2218, 2345, 2351
Eam1105I GACNNNNNGTC 1 cut(s) 2521
EarI CTCTTC 4 cut(s) 159, 2218, 2345, 2351
Ecl136II GAGCTC 1 cut(s) 2361
Eco130I CCWWGG 2 cut(s) 1360, 2148
Eco24I GRGCYC 2 cut(s) 2133, 2363
Eco31I GGTCTC 3 cut(s) 1229, 2019, 2025
Eco47I GGWCC 6 cut(s) 59, 524, 1631, 1655, 1769, 2007
Eco53kI GAGCTC 1 cut(s) 2361
Eco57I CTGAAG 4 cut(s) 408, 1244, 1338, 2352
Eco72I CACGTG 1 cut(s) 2048
Eco88I CYCGRG 1 cut(s) 2314
Eco91I GGTNACC 1 cut(s) 142
EcoICRI GAGCTC 1 cut(s) 2361
EcoNI CCTNNNNNAGG 1 cut(s) 531
EcoO109I RGGNCCY 4 cut(s) 1520, 1631, 1655, 2007
EcoO65I GGTNACC 1 cut(s) 142
EcoRII CCWGG 6 cut(s) 226, 526, 646, 1374, 1561, 2636
EcoT14I CCWWGG 2 cut(s) 1360, 2148
EcoT22I ATGCAT 2 cut(s) 1315, 1515
EcoT38I GRGCYC 2 cut(s) 2133, 2363
ErhI CCWWGG 2 cut(s) 1360, 2148
Esp3I CGTCTC 2 cut(s) 1837, 1944
FalI AAGNNNNNCTT 4 cut(s) 156, 188, 917, 949
FauI CCCGC 4 cut(s) 2076, 2189, 2377, 2643
FauNDI CATATG 3 cut(s) 763, 1515, 1594
FblI GTMKAC 1 cut(s) 79
FokI GGATG 4 cut(s) 368, 1342, 1589, 1901
FriOI GRGCYC 2 cut(s) 2133, 2363
FspBI CTAG 6 cut(s) 309, 408, 1628, 1943, 2490, 2628
GlaI GCGC 4 cut(s) 511, 2078, 2138, 2146
GsaI CCCAGC 3 cut(s) 1101, 2137, 2259
GsuI CTGGAG 2 cut(s) 468, 1998
HaeII RGCGCY 2 cut(s) 513, 2148
HaeIII GGCC 6 cut(s) 543, 799, 1406, 1522, 1851, 2303
HapII CCGG 3 cut(s) 422, 1667, 2591
HgaI GACGC 2 cut(s) 240, 2274
HhaI GCGC 4 cut(s) 512, 2079, 2139, 2147
Hin1I GRCGYC 1 cut(s) 232
Hin6I GCGC 4 cut(s) 510, 2077, 2137, 2145
HinP1I GCGC 4 cut(s) 510, 2077, 2137, 2145
HindIII AAGCTT 1 cut(s) 461
HpaII CCGG 3 cut(s) 422, 1667, 2591
HphI GGTGA 7 cut(s) 136, 380, 692, 869, 1910, 1973, 2186
Hpy166II GTNNAC 7 cut(s) 10, 80, 224, 569, 836, 2439, 2515
Hpy188I TCNGA 8 cut(s) 262, 1224, 1318, 1716, 1769, 1809, 2098, 2203
Hpy8I GTNNAC 7 cut(s) 10, 80, 224, 569, 836, 2439, 2515
Hpy99I CGWCG 5 cut(s) 2060, 2171, 2174, 2534, 2537
HpyAV CCTTC 7 cut(s) 824, 1167, 1533, 1878, 2327, 2368, 2625
HpyCH4III ACNGT 4 cut(s) 59, 1082, 1240, 2198
HpyCH4IV ACGT 5 cut(s) 185, 571, 847, 2047, 2191
HpyF3I CTNAG 8 cut(s) 70, 205, 342, 870, 1043, 1713, 2085, 2442
HpySE526I ACGT 5 cut(s) 185, 571, 847, 2047, 2191
Hsp92I GRCGYC 1 cut(s) 232
HspAI GCGC 4 cut(s) 510, 2077, 2137, 2145
Kpn2I TCCGGA 1 cut(s) 421
LguI GCTCTTC 1 cut(s) 2351
LmnI GCTCC 5 cut(s) 320, 1375, 1606, 2611, 2653
LweI GCATC 7 cut(s) 898, 1187, 1300, 1322, 1364, 1500, 1686
MaeI CTAG 6 cut(s) 309, 408, 1628, 1943, 2490, 2628
MaeII ACGT 5 cut(s) 185, 571, 847, 2047, 2191
MaeIII GTNAC 6 cut(s) 142, 250, 629, 1076, 2048, 2192
MbiI CCGCTC 1 cut(s) 2650
MflI RGATCY 1 cut(s) 1720
MhlI GDGCHC 5 cut(s) 1372, 1603, 2103, 2133, 2363
MluCI AATT 5 cut(s) 17, 213, 381, 964, 1796
MlyI GAGTC 7 cut(s) 1033, 1079, 1136, 1340, 1664, 2213, 2531
MmeI TCCRAC 1 cut(s) 1747
Mph1103I ATGCAT 2 cut(s) 1315, 1515
MroI TCCGGA 1 cut(s) 421
MroXI GAANNNNTTC 1 cut(s) 2411
MseI TTAA 6 cut(s) 21, 212, 465, 473, 917, 936
MslI CAYNNNNRTG 2 cut(s) 1571, 2421
MspA1I CMGCKG 1 cut(s) 1496
MspCI CTTAAG 1 cut(s) 464
MspI CCGG 3 cut(s) 422, 1667, 2591
MspR9I CCNGG 6 cut(s) 228, 528, 648, 1376, 1563, 2638
Mva1269I GAATGC 1 cut(s) 723
MvaI CCWGG 6 cut(s) 228, 528, 648, 1376, 1563, 2638
MvnI CGCG 7 cut(s) 1977, 2077, 2115, 2121, 2139, 2228, 2372
NdeI CATATG 3 cut(s) 763, 1515, 1594
NmeAIII GCCGAG 1 cut(s) 798
NmuCI GTSAC 4 cut(s) 142, 629, 2048, 2192
NruI TCGCGA 1 cut(s) 1977
NsiI ATGCAT 2 cut(s) 1315, 1515
NspI RCATGY 4 cut(s) 244, 1453, 1558, 1645
NspV TTCGAA 2 cut(s) 2216, 2393
PaeI GCATGC 3 cut(s) 244, 1453, 1558
PaeR7I CTCGAG 1 cut(s) 2314
PagI TCATGA 1 cut(s) 1782
PciSI GCTCTTC 1 cut(s) 2351
PcsI WCGNNNNNNNCGW 2 cut(s) 1993, 2163
PctI GAATGC 1 cut(s) 723
PdmI GAANNNNTTC 1 cut(s) 2411
PfeI GAWTC 7 cut(s) 41, 101, 190, 257, 337, 1062, 1153
PflFI GACNNNGTC 1 cut(s) 2054
PflMI CCANNNNNTGG 2 cut(s) 719, 1595
PleI GAGTC 7 cut(s) 1033, 1078, 1135, 1339, 1664, 2212, 2530
PmaCI CACGTG 1 cut(s) 2048
PmlI CACGTG 1 cut(s) 2048
PpsI GAGTC 7 cut(s) 1033, 1078, 1135, 1339, 1664, 2212, 2530
Ppu21I YACGTR 1 cut(s) 2048
PpuMI RGGWCCY 3 cut(s) 1631, 1655, 2007
PsiI TTATAA 1 cut(s) 1536
Psp124BI GAGCTC 1 cut(s) 2363
Psp1406I AACGTT 1 cut(s) 185
Psp5II RGGWCCY 3 cut(s) 1631, 1655, 2007
Psp6I CCWGG 6 cut(s) 226, 526, 646, 1374, 1561, 2636
PspCI CACGTG 1 cut(s) 2048
PspEI GGTNACC 1 cut(s) 142
PspFI CCCAGC 3 cut(s) 1097, 2133, 2255
PspGI CCWGG 6 cut(s) 226, 526, 646, 1374, 1561, 2636
PspPI GGNCC 8 cut(s) 59, 524, 1520, 1631, 1655, 1769, 1849, 2007
PspPPI RGGWCCY 3 cut(s) 1631, 1655, 2007
PsrI GAACNNNNNNTAC 2 cut(s) 1242, 1274
PstNI CAGNNNCTG 2 cut(s) 788, 1402
PsuI RGATCY 1 cut(s) 1720
PsyI GACNNNGTC 1 cut(s) 2054
PvuII CAGCTG 1 cut(s) 1496
RruI TCGCGA 1 cut(s) 1977
RsaI GTAC 6 cut(s) 11, 124, 225, 377, 1087, 2573
RsaNI GTAC 6 cut(s) 10, 123, 224, 376, 1086, 2572
RseI CAYNNNNRTG 2 cut(s) 1571, 2421
SacI GAGCTC 1 cut(s) 2363
SapI GCTCTTC 1 cut(s) 2351
SaqAI TTAA 6 cut(s) 21, 212, 465, 473, 917, 936
Sau96I GGNCC 8 cut(s) 59, 524, 1520, 1631, 1655, 1769, 1849, 2007
ScaI AGTACT 1 cut(s) 1087
SchI GAGTC 7 cut(s) 1033, 1079, 1136, 1340, 1664, 2213, 2531
ScrFI CCNGG 6 cut(s) 228, 528, 648, 1376, 1563, 2638
SduI GDGCHC 5 cut(s) 1372, 1603, 2103, 2133, 2363
SfaNI GCATC 7 cut(s) 898, 1187, 1300, 1322, 1364, 1500, 1686
SfcI CTRYAG 1 cut(s) 1966
Sfr274I CTCGAG 1 cut(s) 2314
SfuI TTCGAA 2 cut(s) 2216, 2393
SgrAI CRCCGGYG 1 cut(s) 2590
SinI GGWCC 6 cut(s) 59, 524, 1631, 1655, 1769, 2007
SlaI CTCGAG 1 cut(s) 2314
SmiMI CAYNNNNRTG 2 cut(s) 1571, 2421
SmlI CTYRAG 3 cut(s) 464, 1482, 2314
SmoI CTYRAG 3 cut(s) 464, 1482, 2314
SpeI ACTAGT 1 cut(s) 2489
SphI GCATGC 3 cut(s) 244, 1453, 1558
Sse9I AATT 5 cut(s) 17, 213, 381, 964, 1796
SspI AATATT 1 cut(s) 96
SspMI CTAG 6 cut(s) 309, 408, 1628, 1943, 2490, 2628
SstI GAGCTC 1 cut(s) 2363
StyD4I CCNGG 6 cut(s) 226, 526, 646, 1374, 1561, 2636
StyI CCWWGG 2 cut(s) 1360, 2148
TaaI ACNGT 4 cut(s) 59, 1082, 1240, 2198
TaiI ACGT 5 cut(s) 188, 574, 850, 2050, 2194
TaqII GACCGA 4 cut(s) 2043, 2049, 2139, 2246
TasI AATT 5 cut(s) 17, 213, 381, 964, 1796
TatI WGTACW 2 cut(s) 9, 1085
TauI GCSGC 5 cut(s) 406, 2228, 2372, 2465, 2665
TfiI GAWTC 7 cut(s) 41, 101, 190, 257, 337, 1062, 1153
Tru1I TTAA 6 cut(s) 21, 212, 465, 473, 917, 936
Tru9I TTAA 6 cut(s) 21, 212, 465, 473, 917, 936
TscAI CASTG 5 cut(s) 405, 671, 724, 774, 884
TseFI GTSAC 4 cut(s) 142, 629, 2048, 2192
Tsp45I GTSAC 4 cut(s) 142, 629, 2048, 2192
TspRI CASTG 5 cut(s) 405, 671, 724, 774, 884
Tth111I GACNNNGTC 1 cut(s) 2054
Van91I CCANNNNNTGG 2 cut(s) 719, 1595
Vha464I CTTAAG 1 cut(s) 464
VpaK11BI GGWCC 6 cut(s) 59, 524, 1631, 1655, 1769, 2007
XagI CCTNNNNNAGG 1 cut(s) 531
XapI RAATTY 3 cut(s) 17, 381, 1796
XbaI TCTAGA 1 cut(s) 2627
XceI RCATGY 4 cut(s) 244, 1453, 1558, 1645
XcmI CCANNNNNNNNNTGG 1 cut(s) 492
XhoI CTCGAG 1 cut(s) 2314
XmiI GTMKAC 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 2411
XspI CTAG 6 cut(s) 309, 408, 1628, 1943, 2490, 2628
ZrmI AGTACT 1 cut(s) 1087
Zsp2I ATGCAT 2 cut(s) 1315, 1515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.