Rroxscaffold_3G00253510

DWNN domain, A CCHC-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0001377
Physical Location & Seq
Forward (+)
47546459 .. 47553249
6791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00253510.1

Sequence Viewer

Length: 1509 bp
ATGGCGGTGTACTATAAATTTAAGAGTGCAAGAGATTATGATTCTATTGCTATGGACGGTCCTTTCATCTCAGTTGGTATACTCAAAGAAAAAATATTTGAATCCAAGCATTTAGGGAGGGGTACTGATTTCGACCTTGTGGTCACCAATGCCCAGACCAATGAAGAGTATCTTGATGAAGCAACGTTGATTCCAAAAAATACCTCAGTTTTAATTCGCCGTGTACCTGGACGCCCTCGCATGCCCATTGTTACTGATTCAGAGCATAAAGTAGAAGATATGGTGGAGAACATTGAACCAGAAAGGACTAGCTTTCTGGGAGCTGGTTCCTCTGTGAATCCTGAGCCAGACTGGGATGATCTTGGGGGTGATTTGTACGAAATACCTGAAGTTTTGCCAGTGCAGCCAAGTTATGCGGTTCCGGATATTCCACCATCAAATAAAGCTGATGAAGATAGCAAGCTTAAGGCTTTAATCGACACTCCAGTATTAGACTGGCAACATCAAGGCGCTGACGGCTATGGTCCTGGTAGAGGTTTTGGCCGTGGTATGAATGGGAGAATGGGTGGACGTGGTTTTGGTCGAACAGGAGTGTTTGAGAAAAAAACACCTCCACAGGGCTATATATGTCACAGGTGTAAGGTTCCTGGTCATTATATTCAGCACTGCCCTACAAATGGTGATCCAAACTATGACATCAAAAGAGTGAAGCCACCCACTGGCATTCCCAAGTCCATGTTGATAGCAACCCCAGATGGCTCATATGCACTGCCGAGTGGTGCAGTAGCTGTATTGAGGCCGAATGAGGCTGCTTTTGAGAAAGAGATCGAAGGTTTACCGTCTACGCGTTCTGTTGGTGATTTACCACCTGAGCTACACTGCCCCTTGTGCAAGGAAGTGATGAAAGATGCTGTTTTAACGAGCAAGTGTTGCTTTAAGAGCTTTTGTGATAAGTGTATCAGGAATTACATTACCTCAAAGTCAGTGTGTGTCTGTGGGGCTACAAATACACTTGCAGATGATCTACTGCCAAATAAGACTCTCAGGGATACCATCAATCGAATCTTGGAGTCTGGTAACAGTAGTACTGATAACGCTGGGAGTGCTTTCCAAGTTCAAGATATGGAGTCTGCACGCTGCCCACAACCCAAGATTCCTTCCCCTACTTTATCTGCTGCATCAAAGGGAGAAAATAAGCCTTTACCTTTGCATGAAGAAGCTCTGAAGACACAAGAGACCGTAGATGAGGTAAAACCTGTTCTTGCCCCACAGCAGATGTTAGAGAATGTGAGGAATACAAAAATAGCTGATGCATCTGAAGCTACCCATGAGTCAATGAGTGTAAAGGAACCTGCATCCCAAGGGAGTGCTCCCCTGGTTGATGAAGAAGTGCAGCAGAGGCTGGCCTCTGTGGAGGCAGGAAAGAAAAGGAAAAGAAGAAAGTTCGCATGCCTGCAAACGAAATGCAATGGAAGACACCTCAAGACCTTGCAGCTGAAAACTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

502

Amino Acids

54.96

Weight (kDa)

6.41

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DWNN PF08783 3 - 76 1.5e-31 DWNN domain
zf-CCHC_2 PF13696 205 - 225 2.6e-09 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 140
Acc36I ACCTGC 1 cut(s) 1360
AccB7I CCANNNNNTGG 1 cut(s) 719
AccI GTMKAC 2 cut(s) 79, 842
AccII CGCG 1 cut(s) 847
AccIII TCCGGA 1 cut(s) 421
AciI CCGC 2 cut(s) 5, 416
AclI AACGTT 1 cut(s) 185
AclWI GGATC 1 cut(s) 677
AcoI YGGCCR 1 cut(s) 541
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 3 cut(s) 408, 1244, 1338
AcyI GRCGYC 1 cut(s) 232
AfaI GTAC 5 cut(s) 11, 124, 225, 377, 1087
AfiI CCNNNNNNNGG 4 cut(s) 533, 617, 677, 719
AflII CTTAAG 1 cut(s) 464
AflIII ACRYGT 1 cut(s) 845
AgsI TTSAA 3 cut(s) 101, 296, 1118
AjiI CACGTC 1 cut(s) 572
AjnI CCWGG 4 cut(s) 226, 526, 646, 1374
Alw21I GWGCWC 1 cut(s) 1372
Alw26I GTCTC 1 cut(s) 1229
AlwI GGATC 1 cut(s) 677
AlwNI CAGNNNCTG 2 cut(s) 788, 1402
Aor13HI TCCGGA 1 cut(s) 421
AoxI GGCC 3 cut(s) 541, 797, 1404
ApeKI GCWGC 6 cut(s) 403, 809, 1137, 1175, 1393, 1492
ApoI RAATTY 1 cut(s) 17
AspLEI GCGC 1 cut(s) 512
AspS9I GGNCC 2 cut(s) 59, 524
AsuHPI GGTGA 4 cut(s) 136, 380, 692, 869
AvaII GGWCC 2 cut(s) 59, 524
BbsI GAAGAC 2 cut(s) 1232, 1480
Bbv12I GWGCWC 1 cut(s) 1372
BbvI GCAGC 6 cut(s) 415, 796, 1124, 1162, 1405, 1504
BccI CCATC 3 cut(s) 442, 749, 1061
BceAI ACGGC 3 cut(s) 204, 528, 532
BciT130I CCWGG 4 cut(s) 228, 528, 648, 1376
BciVI GTATCC 1 cut(s) 1042
BcoDI GTCTC 1 cut(s) 1229
BfaI CTAG 1 cut(s) 309
BfoI RGCGCY 1 cut(s) 513
BfrI CTTAAG 1 cut(s) 464
BfuAI ACCTGC 1 cut(s) 1360
BfuI GTATCC 1 cut(s) 1042
BisI GCNGC 6 cut(s) 404, 810, 1138, 1176, 1394, 1493
BlsI GCNGC 6 cut(s) 405, 811, 1139, 1177, 1395, 1494
BmcAI AGTACT 1 cut(s) 1087
Bme1390I CCNGG 4 cut(s) 228, 528, 648, 1376
Bme18I GGWCC 2 cut(s) 59, 524
BmgBI CACGTC 1 cut(s) 572
BmgT120I GGNCC 2 cut(s) 59, 524
BmiI GGNNCC 4 cut(s) 328, 420, 645, 1350
BmrFI CCNGG 4 cut(s) 228, 528, 648, 1376
BmrI ACTGGG 1 cut(s) 361
BmsI GCATC 5 cut(s) 898, 1187, 1300, 1322, 1364
BmuI ACTGGG 1 cut(s) 361
BpiI GAAGAC 2 cut(s) 1232, 1480
BpmI CTGGAG 1 cut(s) 468
Bpu10I CCTNAGC 2 cut(s) 342, 870
BpuEI CTTGAG 1 cut(s) 1466
BsaHI GRCGYC 1 cut(s) 232
BsaI GGTCTC 1 cut(s) 1229
BsaJI CCNNGG 3 cut(s) 544, 1360, 1374
BsaWI WCCGGW 1 cut(s) 421
BsaXI ACNNNNNCTCC 2 cut(s) 550, 580
Bsc4I CCNNNNNNNGG 4 cut(s) 533, 617, 677, 719
Bse1I ACTGG 5 cut(s) 356, 398, 485, 500, 724
Bse3DI GCAATG 1 cut(s) 1474
BseAI TCCGGA 1 cut(s) 421
BseBI CCWGG 4 cut(s) 228, 528, 648, 1376
BseDI CCNNGG 3 cut(s) 544, 1360, 1374
BseGI GGATG 2 cut(s) 361, 1355
BseLI CCNNNNNNNGG 4 cut(s) 533, 617, 677, 719
BseMI GCAATG 1 cut(s) 1474
BseMII CTCAG 5 cut(s) 84, 219, 333, 861, 1057
BseNI ACTGG 5 cut(s) 356, 398, 485, 500, 724
BseXI GCAGC 6 cut(s) 415, 796, 1124, 1162, 1405, 1504
BseYI CCCAGC 1 cut(s) 1097
BsgI GTGCAG 4 cut(s) 422, 801, 1116, 1412
Bsh1236I CGCG 1 cut(s) 847
BshFI GGCC 3 cut(s) 543, 799, 1406
BsiHKAI GWGCWC 1 cut(s) 1372
BsiSI CCGG 1 cut(s) 422
BslI CCNNNNNNNGG 4 cut(s) 533, 617, 677, 719
BsmAI GTCTC 1 cut(s) 1229
BsmI GAATGC 1 cut(s) 723
BsnI GGCC 3 cut(s) 543, 799, 1406
Bso31I GGTCTC 1 cut(s) 1229
Bsp1286I GDGCHC 1 cut(s) 1372
Bsp13I TCCGGA 1 cut(s) 421
Bsp143I GATC 4 cut(s) 358, 682, 825, 1021
BspACI CCGC 2 cut(s) 5, 416
BspANI GGCC 3 cut(s) 543, 799, 1406
BspCNI CTCAG 5 cut(s) 83, 218, 334, 862, 1056
BspEI TCCGGA 1 cut(s) 421
BspFNI CGCG 1 cut(s) 847
BspHI TCATGA 1 cut(s) 1505
BspLI GGNNCC 4 cut(s) 328, 420, 645, 1350
BspMI ACCTGC 1 cut(s) 1360
BspPI GGATC 1 cut(s) 677
BspTI CTTAAG 1 cut(s) 464
BspTNI GGTCTC 1 cut(s) 1229
BsrDI GCAATG 1 cut(s) 1474
BsrI ACTGG 5 cut(s) 356, 398, 485, 500, 724
BssECI CCNNGG 3 cut(s) 544, 1360, 1374
BssMI GATC 4 cut(s) 358, 682, 825, 1021
BssNAI GTATAC 1 cut(s) 80
BssNI GRCGYC 1 cut(s) 232
BssT1I CCWWGG 1 cut(s) 1360
Bst1107I GTATAC 1 cut(s) 80
Bst2UI CCWGG 4 cut(s) 228, 528, 648, 1376
Bst4CI ACNGT 4 cut(s) 59, 840, 1082, 1240
Bst6I CTCTTC 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 232
BstAFI CTTAAG 1 cut(s) 464
BstAPI GCANNNNNTGC 1 cut(s) 930
BstC8I GCNNGC 6 cut(s) 242, 461, 1135, 1404, 1450, 1454
BstDEI CTNAG 5 cut(s) 70, 205, 342, 870, 1043
BstDSI CCRYGG 1 cut(s) 544
BstEII GGTNACC 1 cut(s) 142
BstENI CCTNNNNNAGG 1 cut(s) 531
BstF5I GGATG 2 cut(s) 361, 1355
BstFNI CGCG 1 cut(s) 847
BstH2I RGCGCY 1 cut(s) 513
BstHHI GCGC 1 cut(s) 512
BstKTI GATC 4 cut(s) 361, 685, 828, 1024
BstMAI GTCTC 1 cut(s) 1229
BstMBI GATC 4 cut(s) 358, 682, 825, 1021
BstMWI GCNNNNNNNGC 8 cut(s) 403, 516, 888, 930, 939, 1103, 1319, 1399
BstNI CCWGG 4 cut(s) 228, 528, 648, 1376
BstNSI RCATGY 2 cut(s) 244, 1452
BstPI GGTNACC 1 cut(s) 142
BstSCI CCNGG 4 cut(s) 226, 526, 646, 1374
BstUI CGCG 1 cut(s) 847
BstV1I GCAGC 6 cut(s) 415, 796, 1124, 1162, 1405, 1504
BstV2I GAAGAC 2 cut(s) 1232, 1480
BstZ17I GTATAC 1 cut(s) 80
BsuI GTATCC 1 cut(s) 1042
BsuRI GGCC 3 cut(s) 543, 799, 1406
BtgI CCRYGG 1 cut(s) 544
BtrI CACGTC 1 cut(s) 572
BtsCI GGATG 2 cut(s) 361, 1355
BtsI GCAGTG 3 cut(s) 664, 767, 877
BtsIMutI CAGTG 6 cut(s) 405, 664, 717, 767, 877, 990
BveI ACCTGC 1 cut(s) 1360
Cac8I GCNNGC 6 cut(s) 242, 461, 1135, 1404, 1450, 1454
CaiI CAGNNNCTG 2 cut(s) 788, 1402
CciI TCATGA 1 cut(s) 1505
CfoI GCGC 1 cut(s) 512
Cfr13I GGNCC 2 cut(s) 59, 524
CseI GACGC 1 cut(s) 240
Csp6I GTAC 5 cut(s) 10, 123, 224, 376, 1086
CviAII CATG 6 cut(s) 241, 736, 1211, 1328, 1449, 1506
CviQI GTAC 5 cut(s) 10, 123, 224, 376, 1086
DdeI CTNAG 5 cut(s) 70, 205, 342, 870, 1043
DpnI GATC 4 cut(s) 360, 684, 827, 1023
DpnII GATC 4 cut(s) 358, 682, 825, 1021
DrdI GACNNNNNNGTC 1 cut(s) 140
DseDI GACNNNNNNGTC 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 541
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 1360
Eco31I GGTCTC 1 cut(s) 1229
Eco47I GGWCC 2 cut(s) 59, 524
Eco57I CTGAAG 3 cut(s) 408, 1244, 1338
Eco91I GGTNACC 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 531
EcoO65I GGTNACC 1 cut(s) 142
EcoRII CCWGG 4 cut(s) 226, 526, 646, 1374
EcoT14I CCWWGG 1 cut(s) 1360
EcoT22I ATGCAT 1 cut(s) 1315
ErhI CCWWGG 1 cut(s) 1360
FaeI CATG 6 cut(s) 244, 739, 1214, 1331, 1452, 1509
FalI AAGNNNNNCTT 4 cut(s) 156, 188, 917, 949
FatI CATG 6 cut(s) 240, 735, 1210, 1327, 1448, 1505
FauNDI CATATG 1 cut(s) 763
FblI GTMKAC 2 cut(s) 79, 842
Fnu4HI GCNGC 6 cut(s) 404, 810, 1138, 1176, 1394, 1493
FokI GGATG 2 cut(s) 368, 1342
Fsp4HI GCNGC 6 cut(s) 404, 810, 1138, 1176, 1394, 1493
FspBI CTAG 1 cut(s) 309
GlaI GCGC 1 cut(s) 511
GluI GCNGC 6 cut(s) 404, 810, 1138, 1176, 1394, 1493
GsaI CCCAGC 1 cut(s) 1101
GsuI CTGGAG 1 cut(s) 468
HaeII RGCGCY 1 cut(s) 513
HaeIII GGCC 3 cut(s) 543, 799, 1406
HapII CCGG 1 cut(s) 422
HgaI GACGC 1 cut(s) 240
HhaI GCGC 1 cut(s) 512
Hin1I GRCGYC 1 cut(s) 232
Hin1II CATG 6 cut(s) 244, 739, 1214, 1331, 1452, 1509
Hin6I GCGC 1 cut(s) 510
HinP1I GCGC 1 cut(s) 510
HindIII AAGCTT 1 cut(s) 461
HpaII CCGG 1 cut(s) 422
HphI GGTGA 4 cut(s) 136, 380, 692, 869
Hpy166II GTNNAC 6 cut(s) 10, 80, 224, 569, 836, 843
Hpy188I TCNGA 3 cut(s) 262, 1224, 1318
Hpy188III TCNNGA 7 cut(s) 173, 341, 422, 961, 1118, 1483, 1506
Hpy8I GTNNAC 6 cut(s) 10, 80, 224, 569, 836, 843
HpyAV CCTTC 2 cut(s) 824, 1167
HpyCH4III ACNGT 4 cut(s) 59, 840, 1082, 1240
HpyCH4IV ACGT 2 cut(s) 185, 571
HpyF10VI GCNNNNNNNGC 8 cut(s) 403, 516, 888, 930, 939, 1103, 1319, 1399
HpyF3I CTNAG 5 cut(s) 70, 205, 342, 870, 1043
HpySE526I ACGT 2 cut(s) 185, 571
Hsp92I GRCGYC 1 cut(s) 232
Hsp92II CATG 6 cut(s) 244, 739, 1214, 1331, 1452, 1509
HspAI GCGC 1 cut(s) 510
Kpn2I TCCGGA 1 cut(s) 421
Kzo9I GATC 4 cut(s) 358, 682, 825, 1021
LmnI GCTCC 2 cut(s) 320, 1375
Lsp1109I GCAGC 6 cut(s) 415, 796, 1124, 1162, 1405, 1504
LweI GCATC 5 cut(s) 898, 1187, 1300, 1322, 1364
MaeI CTAG 1 cut(s) 309
MaeII ACGT 2 cut(s) 185, 571
MaeIII GTNAC 4 cut(s) 142, 250, 629, 1076
MalI GATC 4 cut(s) 360, 684, 827, 1023
MboI GATC 4 cut(s) 358, 682, 825, 1021
MboII GAAGA 8 cut(s) 176, 287, 464, 1226, 1237, 1397, 1449, 1485
MhlI GDGCHC 1 cut(s) 1372
MluCI AATT 3 cut(s) 17, 213, 964
MluI ACGCGT 1 cut(s) 845
MlyI GAGTC 4 cut(s) 1033, 1079, 1136, 1340
Mph1103I ATGCAT 1 cut(s) 1315
MroI TCCGGA 1 cut(s) 421
MseI TTAA 6 cut(s) 21, 212, 465, 473, 917, 936
MspA1I CMGCKG 1 cut(s) 1495
MspCI CTTAAG 1 cut(s) 464
MspI CCGG 1 cut(s) 422
MspR9I CCNGG 4 cut(s) 228, 528, 648, 1376
Mva1269I GAATGC 1 cut(s) 723
MvaI CCWGG 4 cut(s) 228, 528, 648, 1376
MvnI CGCG 1 cut(s) 847
MwoI GCNNNNNNNGC 8 cut(s) 403, 516, 888, 930, 939, 1103, 1319, 1399
NdeI CATATG 1 cut(s) 763
NdeII GATC 4 cut(s) 358, 682, 825, 1021
NlaIII CATG 6 cut(s) 244, 739, 1214, 1331, 1452, 1509
NlaIV GGNNCC 4 cut(s) 328, 420, 645, 1350
NmeAIII GCCGAG 1 cut(s) 798
NmuCI GTSAC 2 cut(s) 142, 629
NsiI ATGCAT 1 cut(s) 1315
NspI RCATGY 2 cut(s) 244, 1452
PaeI GCATGC 2 cut(s) 244, 1452
PagI TCATGA 1 cut(s) 1505
PctI GAATGC 1 cut(s) 723
PfeI GAWTC 7 cut(s) 41, 101, 190, 257, 337, 1062, 1153
PflMI CCANNNNNTGG 1 cut(s) 719
PkrI GCNGC 6 cut(s) 405, 811, 1139, 1177, 1395, 1494
PleI GAGTC 4 cut(s) 1033, 1078, 1135, 1339
PpsI GAGTC 4 cut(s) 1033, 1078, 1135, 1339
Psp1406I AACGTT 1 cut(s) 185
Psp6I CCWGG 4 cut(s) 226, 526, 646, 1374
PspEI GGTNACC 1 cut(s) 142
PspFI CCCAGC 1 cut(s) 1097
PspGI CCWGG 4 cut(s) 226, 526, 646, 1374
PspN4I GGNNCC 4 cut(s) 328, 420, 645, 1350
PspPI GGNCC 2 cut(s) 59, 524
PsrI GAACNNNNNNTAC 2 cut(s) 1242, 1274
PstNI CAGNNNCTG 2 cut(s) 788, 1402
PvuII CAGCTG 1 cut(s) 1495
RsaI GTAC 5 cut(s) 11, 124, 225, 377, 1087
RsaNI GTAC 5 cut(s) 10, 123, 224, 376, 1086
SaqAI TTAA 6 cut(s) 21, 212, 465, 473, 917, 936
SatI GCNGC 6 cut(s) 404, 810, 1138, 1176, 1394, 1493
Sau3AI GATC 4 cut(s) 358, 682, 825, 1021
Sau96I GGNCC 2 cut(s) 59, 524
ScaI AGTACT 1 cut(s) 1087
SchI GAGTC 4 cut(s) 1033, 1079, 1136, 1340
ScrFI CCNGG 4 cut(s) 228, 528, 648, 1376
SduI GDGCHC 1 cut(s) 1372
SfaNI GCATC 5 cut(s) 898, 1187, 1300, 1322, 1364
SinI GGWCC 2 cut(s) 59, 524
SmlI CTYRAG 2 cut(s) 464, 1481
SmoI CTYRAG 2 cut(s) 464, 1481
SphI GCATGC 2 cut(s) 244, 1452
Sse9I AATT 3 cut(s) 17, 213, 964
SsiI CCGC 2 cut(s) 5, 416
SspI AATATT 1 cut(s) 96
SspMI CTAG 1 cut(s) 309
StyD4I CCNGG 4 cut(s) 226, 526, 646, 1374
StyI CCWWGG 1 cut(s) 1360
TaaI ACNGT 4 cut(s) 59, 840, 1082, 1240
TaiI ACGT 2 cut(s) 188, 574
TaqI TCGA 5 cut(s) 132, 477, 583, 828, 1060
TasI AATT 3 cut(s) 17, 213, 964
TatI WGTACW 2 cut(s) 9, 1085
TfiI GAWTC 7 cut(s) 41, 101, 190, 257, 337, 1062, 1153
Tru1I TTAA 6 cut(s) 21, 212, 465, 473, 917, 936
Tru9I TTAA 6 cut(s) 21, 212, 465, 473, 917, 936
TscAI CASTG 6 cut(s) 405, 671, 724, 774, 884, 990
TseFI GTSAC 2 cut(s) 142, 629
TseI GCWGC 6 cut(s) 403, 809, 1137, 1175, 1393, 1492
Tsp45I GTSAC 2 cut(s) 142, 629
TspDTI ATGAA 9 cut(s) 55, 177, 192, 465, 566, 917, 1227, 1398, 1494
TspRI CASTG 6 cut(s) 405, 671, 724, 774, 884, 990
Van91I CCANNNNNTGG 1 cut(s) 719
Vha464I CTTAAG 1 cut(s) 464
VpaK11BI GGWCC 2 cut(s) 59, 524
XagI CCTNNNNNAGG 1 cut(s) 531
XapI RAATTY 1 cut(s) 17
XceI RCATGY 2 cut(s) 244, 1452
XcmI CCANNNNNNNNNTGG 1 cut(s) 492
XmiI GTMKAC 2 cut(s) 79, 842
XspI CTAG 1 cut(s) 309
ZrmI AGTACT 1 cut(s) 1087
Zsp2I ATGCAT 1 cut(s) 1315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.