FvH4_5g19330

DWNN domain, A CCHC-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0001377
Physical Location & Seq
Reverse (-)
11190582 .. 11198526
7945 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g19330.t5

Sequence Viewer

Length: 2688 bp
ATGGCGGTTTACTATAAATTTAAGAGTGCAAGAGATTATGATTCTATTGCTATGGACGGTCCTTTCATCTCAGTTGGTATACTCAAAGAAAAAATATTTGAATCCAAGCATTTAGGGAGGGGTACTGATTTCGACCTTGTGGTCACCAATGCCCAGACCAATGAAGAGTATCTTGATGATGCAACGTTGATTCCAAAAAATACCTCAGTTTTAATTCGCCGTGTACCTGGACGCCCCCGCATGCCCATTGTTACTGATCCAGAGCATAGAGTGGAAGATGTGATAGAGAACACTGAACCGGAAAAGACTAGCTTTCTGGGAGCTGGTTCCTCTGTGAATCCTGAGCCAGACTGGGATGATCTTGGGGGTGATTTGTATGAAATTCCTGAAGTTATGCCAGTGCAGCCAAGTTATGCGGTTCCGGATATTCCACCAACAAATAAAGCTGATGAGGATAGCAAGCTTAAGGCTCTAATTGACACCCCAGTATTAGACTGGCAACATCAAGGTCCTGAAGGTTTTGGCCCTGGTAGAGGTTTTGGCCGGGGTATGAATGGAAGAATGGGTGGACGCGGTTTTGGTCGAACAGGAGTGTTTGAGAAGAAAACTCCTCCACAGGGCTATATATGTCACAGGTGTAAGGTTCCTGGTCATTTTATTCAGCACTGCCCTACAAATGGTGATCCAAATTATGACATCAAAAGAGTGAAGGCACCCACTGGCATTCCCAGGTCCATGTTGCAAGCAACCCCAGAAGGCTCATATGCATTGCCAAGTGGGGCTGTTGCTGTATTGAGGCCAAATGAGGCTGCTTTTGAGAAAGAGATTGAAGGTTTACCCTCTACGCGTTCTGTTGGTGATCTACCACCTGAGCTACACTGCCCCTTGTGCAAGGAAGTGATGAAAGATGCTGTTTTAACGAGCAAGTGTTGCTTTAAGAGCTTTTGTGACAAGTGTATAAGGAATTACATTACCTCAAAGTCAGTGTGTGTCTGTGGGGATACAAATACACTTGCAGATGATCTACTACCGAATAAGACTCTCAGGGATGCAATCAATCGAATTTTGGAGTCTGGTAACAGTAGTACTGATAACGCTGGCAGTGCTTTCCAAGTTCAAGATATGGAGTCTGCGCGCTGCCCACTACCCAAGATTCCTTCCCCTACTTTATCTGCTGCATCAAAGGGAGAAAATCAGCCTTCACCTCTGAATGAAGCTCTGAAGACACAGGAGATTGTAGATGAGGTGAAACCTGTTCTTGCCCCACAGCAGATGTCAGAAAATGTGAGGAATACAAAAATAGGAGATGCATCTGAAGCTACACATGAGTCAATGAGTGTAAAGGAACCTGCATCCCAAGGGAGTGCTCCCCTGGTTGACGAAGAAGTGCAGCAGAGGCTGGCCTCCGTGGAGGCAGGAAAGAAAAGGAAAAAGAAGAAAGTTCGCATGCCTGCAAACGAAATGCAATGGAAGACTCCTCAAGACCTTGCAGCTGAGAACTACATGATGCATATGGGCCCCTCTACTTATAATCCATACTGGAATGGCATGCAACCTGGCATGGGCATGGATGGCTATATGCCACCATATGGTGCTCCTATGCCGTATATGGGGTATGGAATGGGCCCTATGGACATGCCATTTGGGGGTCCTTTCCCACCTGATTCATTTGGTGGTCAAGGTTATATGATGCCTATGGTTCCACCTCAGAGGGATCTTGCTGACTTTGGTATGGGTATGGGCATGAATGGGATGAATGTTGGACCTCCTCCTATCATGAGCAGAGAGGAATTTGAGGCTCGGAAAGCAGATTTGAGGAGGAAGCGTGAAAATGAGAGACCGGGCCAAAGCAGGGAATTCTCCAAAGATCGGGACTATGGAAGGGAAGTTGGCGGTGATGGCGATGTGCCTCCAATGAAGTCCAAATCTAAGTCTTCTCTAGCCCGATCTCCAAGCCCAGATTCCAGGGACCGCGACCACCATCGCCACCACCGATACGAGAGGTCCTCTCCTGAACCCAGAGACCGAGACCGAAGAGCTTCACGTGACCTCGTCGACCCACTCCCCCCACCCCGCCCTCCCAAGAGAAAACCCGACCACCACCACGACCGTGACCGTGACCGAGAACGAGAGCCCCAGCGGGAAAGCGCCAAGGACCACGACTACTACGACGACGACAAGCCCCGCCAGAAACGTCACCGTTCCGAGTCTTCCTCGTCGAAACCCGCCGCTACTGAAAGTGCAGCACCGCAGTCAAAGCCTAGCTCAGCCAAGTCCGCGGCTGAAATTGCTTCAGCCAAGAGCAAGGCCAGCGTGTTCTCCAGGATCAGCTTCCCTGAGGGCGAAGGGAACAAGAAGAGGAAGAGCTCTCCTGCCGCAAAGGAGACGGCGGGTGGCGGCTCGAAGGAGGTGGCGAATGGATTCCACGACCATGAGTATAGCAAGTCTGCTAAGGTTGCTGCTTCTGCTGCGGCTGTGAGTACAACTAGCAGGAAGAGTACGACCAGTGCTGTGAGCTCTCCTGCTGTGGACTACGAGTCTAGCGACGACGATAGGCACTTTAAGAGGAAGAAGAAGTCGTCGAGGTACGCGGAGGCTTCGCCGCAGGAGGTGCAGGTGGAGGAAGAGCCGTCGAGGCACTCTAGAGGTTCCAGGGATCGAGAGCGGGAGCATAGGCGGCAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

896

Amino Acids

98.98

Weight (kDa)

8.22

Isoelectric Point (pI)

56.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DWNN PF08783 3 - 76 1.7e-31 DWNN domain
zf-CCHC_2 PF13696 205 - 225 2.9e-09 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1530
AarI CACCTGC 1 cut(s) 2605
AasI GACNNNNNNGTC 1 cut(s) 140
Acc36I ACCTGC 2 cut(s) 1357, 2605
AccB1I GGYRCC 1 cut(s) 712
AccB7I CCANNNNNTGG 1 cut(s) 1589
AccBSI CCGCTC 1 cut(s) 2665
AccI GTMKAC 2 cut(s) 79, 2055
AccII CGCG 6 cut(s) 573, 847, 1135, 1974, 2279, 2591
AccIII TCCGGA 1 cut(s) 421
AclI AACGTT 1 cut(s) 185
AclWI GGATC 5 cut(s) 251, 677, 1722, 2333, 2664
AcoI YGGCCR 1 cut(s) 541
AcsI RAATTY 5 cut(s) 17, 381, 1062, 1790, 1856
AcuI CTGAAG 5 cut(s) 408, 534, 1241, 1335, 2277
AcvI CACGTG 1 cut(s) 2045
AcyI GRCGYC 1 cut(s) 232
AfaI GTAC 6 cut(s) 124, 225, 1087, 2482, 2500, 2588
AfiI CCNNNNNNNGG 9 cut(s) 533, 617, 677, 1562, 1589, 1610, 1646, 1852, 1869
AflII CTTAAG 1 cut(s) 464
AflIII ACRYGT 1 cut(s) 845
AgsI TTSAA 3 cut(s) 101, 830, 1118
AhdI GACNNNNNGTC 1 cut(s) 2536
AjnI CCWGG 9 cut(s) 226, 526, 646, 728, 1371, 1555, 1964, 2321, 2651
AjuI GAANNNNNNNTTGG 2 cut(s) 1945, 1977
AleI CACNNNNGTG 1 cut(s) 2109
Alw21I GWGCWC 4 cut(s) 1369, 1597, 2369, 2519
Alw26I GTCTC 4 cut(s) 1831, 2016, 2022, 2378
AlwI GGATC 5 cut(s) 251, 677, 1722, 2333, 2664
AlwNI CAGNNNCTG 1 cut(s) 1399
Aor13HI TCCGGA 1 cut(s) 421
AoxI GGCC 8 cut(s) 523, 541, 797, 1401, 1516, 1624, 1843, 2307
ApaI GGGCCC 2 cut(s) 1520, 1628
ApeKI GCWGC 9 cut(s) 403, 809, 1137, 1175, 1390, 1490, 2243, 2459, 2468
ApoI RAATTY 5 cut(s) 17, 381, 1062, 1790, 1856
ArsI GACNNNNNNTTYG 2 cut(s) 1625, 1657
Asp700I GAANNNNTTC 2 cut(s) 2038, 2420
AspLEI GCGC 3 cut(s) 1135, 1137, 2150
AsuC2I CCSGG 2 cut(s) 545, 1842
AsuHPI GGTGA 8 cut(s) 136, 380, 692, 869, 1194, 1258, 1907, 2189
AvaII GGWCC 8 cut(s) 59, 509, 732, 1649, 1763, 1969, 2004, 2155
AxyI CCTNAGG 1 cut(s) 2337
BaeGI GKGCMC 2 cut(s) 1520, 1628
BanI GGYRCC 1 cut(s) 712
BanII GRGCYC 5 cut(s) 1520, 1628, 2136, 2369, 2519
BbrPI CACGTG 1 cut(s) 2045
BbsI GAAGAC 4 cut(s) 1229, 1478, 1926, 2202
Bbv12I GWGCWC 4 cut(s) 1369, 1597, 2369, 2519
BbvI GCAGC 9 cut(s) 415, 796, 1124, 1162, 1402, 1502, 2255, 2446, 2455
BccI CCATC 3 cut(s) 1565, 1892, 1989
BceAI ACGGC 4 cut(s) 204, 1588, 2403, 2614
BciT130I CCWGG 9 cut(s) 228, 528, 648, 730, 1373, 1557, 1966, 2323, 2653
BciVI GTATCC 1 cut(s) 994
BcnI CCSGG 2 cut(s) 545, 1842
BcoDI GTCTC 4 cut(s) 1831, 2016, 2022, 2378
BfaI CTAG 6 cut(s) 309, 1940, 2262, 2487, 2541, 2643
BfoI RGCGCY 1 cut(s) 2151
BfrI CTTAAG 1 cut(s) 464
BfuAI ACCTGC 2 cut(s) 1357, 2605
BfuI GTATCC 1 cut(s) 994
BglI GCCNNNNNGGC 1 cut(s) 2635
BlpI GCTNAGC 1 cut(s) 2266
BmcAI AGTACT 1 cut(s) 1087
Bme18I GGWCC 8 cut(s) 59, 509, 732, 1649, 1763, 1969, 2004, 2155
BmeRI GACNNNNNGTC 1 cut(s) 2536
BmrI ACTGGG 2 cut(s) 361, 479
BmsI GCATC 9 cut(s) 169, 898, 1039, 1187, 1297, 1319, 1361, 1497, 1680
BmuI ACTGGG 2 cut(s) 361, 479
BpiI GAAGAC 4 cut(s) 1229, 1478, 1926, 2202
BplI GAGNNNNNCTC 6 cut(s) 1991, 2023, 1993, 2025, 2198, 2230
BpmI CTGGAG 1 cut(s) 2305
Bpu10I CCTNAGC 3 cut(s) 342, 870, 2451
Bpu1102I GCTNAGC 1 cut(s) 2266
BpuEI CTTGAG 1 cut(s) 1464
BpuMI CCSGG 2 cut(s) 545, 1842
BsaAI YACGTR 1 cut(s) 2045
BsaHI GRCGYC 1 cut(s) 232
BsaI GGTCTC 3 cut(s) 1831, 2016, 2022
BsaWI WCCGGW 2 cut(s) 298, 421
BsaXI ACNNNNNCTCC 2 cut(s) 1810, 1840
Bsc4I CCNNNNNNNGG 9 cut(s) 533, 617, 677, 1562, 1589, 1610, 1646, 1852, 1869
Bse1I ACTGG 7 cut(s) 356, 398, 485, 500, 724, 1544, 2505
Bse21I CCTNAGG 1 cut(s) 2337
Bse3DI GCAATG 2 cut(s) 767, 1472
BseAI TCCGGA 1 cut(s) 421
BseBI CCWGG 9 cut(s) 228, 528, 648, 730, 1373, 1557, 1966, 2323, 2653
BseGI GGATG 5 cut(s) 361, 1054, 1352, 1576, 1758
BseLI CCNNNNNNNGG 9 cut(s) 533, 617, 677, 1562, 1589, 1610, 1646, 1852, 1869
BseMI GCAATG 2 cut(s) 767, 1472
BseMII CTCAG 9 cut(s) 84, 219, 333, 861, 1057, 1485, 1721, 2280, 2328
BseNI ACTGG 7 cut(s) 356, 398, 485, 500, 724, 1544, 2505
BsePI GCGCGC 1 cut(s) 1133
BseRI GAGGAG 4 cut(s) 600, 1467, 1758, 1831
BseSI GKGCMC 2 cut(s) 1520, 1628
BseXI GCAGC 9 cut(s) 415, 796, 1124, 1162, 1402, 1502, 2255, 2446, 2455
BseYI CCCAGC 1 cut(s) 2136
BsgI GTGCAG 4 cut(s) 422, 1409, 2262, 2633
Bsh1236I CGCG 6 cut(s) 573, 847, 1135, 1974, 2279, 2591
Bsh1285I CGRYCG 1 cut(s) 2110
BshFI GGCC 8 cut(s) 525, 543, 799, 1403, 1518, 1626, 1845, 2309
BshNI GGYRCC 1 cut(s) 712
BsiEI CGRYCG 1 cut(s) 2110
BsiHKAI GWGCWC 4 cut(s) 1369, 1597, 2369, 2519
BsiSI CCGG 4 cut(s) 299, 422, 544, 1841
BslFI GGGAC 2 cut(s) 1886, 1982
BslI CCNNNNNNNGG 9 cut(s) 533, 617, 677, 1562, 1589, 1610, 1646, 1852, 1869
BsmAI GTCTC 4 cut(s) 1831, 2016, 2022, 2378
BsmBI CGTCTC 1 cut(s) 2378
BsmFI GGGAC 2 cut(s) 1886, 1982
BsmI GAATGC 1 cut(s) 723
BsnI GGCC 8 cut(s) 525, 543, 799, 1403, 1518, 1626, 1845, 2309
Bso31I GGTCTC 3 cut(s) 1831, 2016, 2022
Bsp120I GGGCCC 2 cut(s) 1516, 1624
Bsp1286I GDGCHC 7 cut(s) 1369, 1520, 1597, 1628, 2136, 2369, 2519
Bsp13I TCCGGA 1 cut(s) 421
Bsp1720I GCTNAGC 1 cut(s) 2266
BspANI GGCC 8 cut(s) 525, 543, 799, 1403, 1518, 1626, 1845, 2309
BspCNI CTCAG 9 cut(s) 83, 218, 334, 862, 1056, 1486, 1720, 2279, 2329
BspEI TCCGGA 1 cut(s) 421
BspFNI CGCG 6 cut(s) 573, 847, 1135, 1974, 2279, 2591
BspHI TCATGA 1 cut(s) 1776
BspMI ACCTGC 2 cut(s) 1357, 2605
BspPI GGATC 5 cut(s) 251, 677, 1722, 2333, 2664
BspQI GCTCTTC 3 cut(s) 2029, 2357, 2619
BspT107I GGYRCC 1 cut(s) 712
BspTI CTTAAG 1 cut(s) 464
BspTNI GGTCTC 3 cut(s) 1831, 2016, 2022
BsrBI CCGCTC 1 cut(s) 2665
BsrDI GCAATG 2 cut(s) 767, 1472
BsrI ACTGG 7 cut(s) 356, 398, 485, 500, 724, 1544, 2505
BssHII GCGCGC 1 cut(s) 1133
BssNAI GTATAC 1 cut(s) 80
BssNI GRCGYC 1 cut(s) 232
BssT1I CCWWGG 2 cut(s) 1357, 2151
Bst1107I GTATAC 1 cut(s) 80
Bst2UI CCWGG 9 cut(s) 228, 528, 648, 730, 1373, 1557, 1966, 2323, 2653
Bst4CI ACNGT 5 cut(s) 59, 1082, 2111, 2117, 2201
Bst6I CTCTTC 6 cut(s) 159, 2029, 2351, 2357, 2489, 2619
BstACI GRCGYC 1 cut(s) 232
BstAFI CTTAAG 1 cut(s) 464
BstAPI GCANNNNNTGC 2 cut(s) 930, 2611
BstBAI YACGTR 1 cut(s) 2045
BstDSI CCRYGG 2 cut(s) 1407, 2277
BstEII GGTNACC 1 cut(s) 142
BstENI CCTNNNNNAGG 1 cut(s) 531
BstF5I GGATG 5 cut(s) 361, 1054, 1352, 1576, 1758
BstFNI CGCG 6 cut(s) 573, 847, 1135, 1974, 2279, 2591
BstH2I RGCGCY 1 cut(s) 2151
BstHHI GCGC 3 cut(s) 1135, 1137, 2150
BstMAI GTCTC 4 cut(s) 1831, 2016, 2022, 2378
BstMCI CGRYCG 1 cut(s) 2110
BstNI CCWGG 9 cut(s) 228, 528, 648, 730, 1373, 1557, 1966, 2323, 2653
BstNSI RCATGY 4 cut(s) 244, 1450, 1552, 1639
BstPI GGTNACC 1 cut(s) 142
BstSLI GKGCMC 2 cut(s) 1520, 1628
BstUI CGCG 6 cut(s) 573, 847, 1135, 1974, 2279, 2591
BstV1I GCAGC 9 cut(s) 415, 796, 1124, 1162, 1402, 1502, 2255, 2446, 2455
BstV2I GAAGAC 4 cut(s) 1229, 1478, 1926, 2202
BstX2I RGATCY 1 cut(s) 1714
BstYI RGATCY 1 cut(s) 1714
BstZ17I GTATAC 1 cut(s) 80
Bsu36I CCTNAGG 1 cut(s) 2337
BsuI GTATCC 1 cut(s) 994
BsuRI GGCC 8 cut(s) 525, 543, 799, 1403, 1518, 1626, 1845, 2309
BtgI CCRYGG 2 cut(s) 1407, 2277
BtgZI GCGATG 2 cut(s) 1917, 1967
BtsCI GGATG 5 cut(s) 361, 1054, 1352, 1576, 1758
BtsI GCAGTG 3 cut(s) 664, 877, 1108
BtsIMutI CAGTG 8 cut(s) 291, 405, 664, 717, 877, 990, 1108, 2512
BveI ACCTGC 2 cut(s) 1357, 2605
CaiI CAGNNNCTG 1 cut(s) 1399
CciI TCATGA 1 cut(s) 1776
CfoI GCGC 3 cut(s) 1135, 1137, 2150
Cfr42I CCGCGG 1 cut(s) 2280
CseI GACGC 2 cut(s) 240, 579
Csp6I GTAC 6 cut(s) 123, 224, 1086, 2481, 2499, 2587
CviQI GTAC 6 cut(s) 123, 224, 1086, 2481, 2499, 2587
DrdI GACNNNNNNGTC 1 cut(s) 140
DriI GACNNNNNGTC 1 cut(s) 2536
DseDI GACNNNNNNGTC 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 541
Eam1104I CTCTTC 6 cut(s) 159, 2029, 2351, 2357, 2489, 2619
Eam1105I GACNNNNNGTC 1 cut(s) 2536
EarI CTCTTC 6 cut(s) 159, 2029, 2351, 2357, 2489, 2619
Ecl136II GAGCTC 2 cut(s) 2367, 2517
Eco130I CCWWGG 2 cut(s) 1357, 2151
Eco24I GRGCYC 5 cut(s) 1520, 1628, 2136, 2369, 2519
Eco31I GGTCTC 3 cut(s) 1831, 2016, 2022
Eco47I GGWCC 8 cut(s) 59, 509, 732, 1649, 1763, 1969, 2004, 2155
Eco53kI GAGCTC 2 cut(s) 2367, 2517
Eco57I CTGAAG 5 cut(s) 408, 534, 1241, 1335, 2277
Eco72I CACGTG 1 cut(s) 2045
Eco81I CCTNAGG 1 cut(s) 2337
Eco91I GGTNACC 1 cut(s) 142
EcoICRI GAGCTC 2 cut(s) 2367, 2517
EcoNI CCTNNNNNAGG 1 cut(s) 531
EcoO109I RGGNCCY 5 cut(s) 509, 1517, 1625, 1649, 2004
EcoO65I GGTNACC 1 cut(s) 142
EcoRI GAATTC 1 cut(s) 1856
EcoRII CCWGG 9 cut(s) 226, 526, 646, 728, 1371, 1555, 1964, 2321, 2651
EcoT14I CCWWGG 2 cut(s) 1357, 2151
EcoT22I ATGCAT 3 cut(s) 769, 1312, 1512
EcoT38I GRGCYC 5 cut(s) 1520, 1628, 2136, 2369, 2519
ErhI CCWWGG 2 cut(s) 1357, 2151
Esp3I CGTCTC 1 cut(s) 2378
FalI AAGNNNNNCTT 6 cut(s) 156, 188, 296, 328, 917, 949
FaqI GGGAC 2 cut(s) 1886, 1982
FauI CCCGC 7 cut(s) 245, 2081, 2133, 2192, 2233, 2383, 2658
FauNDI CATATG 3 cut(s) 763, 1512, 1588
FblI GTMKAC 2 cut(s) 79, 2055
FokI GGATG 5 cut(s) 368, 1061, 1339, 1583, 1765
FriOI GRGCYC 5 cut(s) 1520, 1628, 2136, 2369, 2519
FspBI CTAG 6 cut(s) 309, 1940, 2262, 2487, 2541, 2643
GlaI GCGC 3 cut(s) 1134, 1136, 2149
GsaI CCCAGC 1 cut(s) 2140
GsuI CTGGAG 1 cut(s) 2305
HaeII RGCGCY 1 cut(s) 2151
HaeIII GGCC 8 cut(s) 525, 543, 799, 1403, 1518, 1626, 1845, 2309
HapII CCGG 4 cut(s) 299, 422, 544, 1841
HgaI GACGC 2 cut(s) 240, 579
HhaI GCGC 3 cut(s) 1135, 1137, 2150
Hin1I GRCGYC 1 cut(s) 232
Hin6I GCGC 3 cut(s) 1133, 1135, 2148
HinP1I GCGC 3 cut(s) 1133, 1135, 2148
HincII GTYRAC 2 cut(s) 1378, 2056
HindII GTYRAC 2 cut(s) 1378, 2056
HindIII AAGCTT 1 cut(s) 461
HpaII CCGG 4 cut(s) 299, 422, 544, 1841
HphI GGTGA 8 cut(s) 136, 380, 692, 869, 1194, 1258, 1907, 2189
Hpy166II GTNNAC 8 cut(s) 10, 80, 224, 569, 836, 1378, 2056, 2530
Hpy188I TCNGA 7 cut(s) 1209, 1221, 1279, 1315, 1710, 1803, 2206
Hpy8I GTNNAC 8 cut(s) 10, 80, 224, 569, 836, 1378, 2056, 2530
Hpy99I CGWCG 8 cut(s) 2057, 2174, 2177, 2221, 2549, 2552, 2584, 2635
HpyAV CCTTC 9 cut(s) 509, 703, 749, 824, 1167, 1209, 1875, 2339, 2398
HpyCH4III ACNGT 5 cut(s) 59, 1082, 2111, 2117, 2201
HpyCH4IV ACGT 3 cut(s) 185, 2044, 2194
HpySE526I ACGT 3 cut(s) 185, 2044, 2194
Hsp92I GRCGYC 1 cut(s) 232
HspAI GCGC 3 cut(s) 1133, 1135, 2148
Kpn2I TCCGGA 1 cut(s) 421
KspI CCGCGG 1 cut(s) 2280
LguI GCTCTTC 3 cut(s) 2029, 2357, 2619
LmnI GCTCC 4 cut(s) 320, 1372, 1600, 2668
Lsp1109I GCAGC 9 cut(s) 415, 796, 1124, 1162, 1402, 1502, 2255, 2446, 2455
LweI GCATC 9 cut(s) 169, 898, 1039, 1187, 1297, 1319, 1361, 1497, 1680
MaeI CTAG 6 cut(s) 309, 1940, 2262, 2487, 2541, 2643
MaeII ACGT 3 cut(s) 185, 2044, 2194
MaeIII GTNAC 9 cut(s) 142, 250, 629, 947, 1076, 2045, 2111, 2117, 2195
MbiI CCGCTC 1 cut(s) 2665
MflI RGATCY 1 cut(s) 1714
MhlI GDGCHC 7 cut(s) 1369, 1520, 1597, 1628, 2136, 2369, 2519
MluI ACGCGT 1 cut(s) 845
MlyI GAGTC 7 cut(s) 1033, 1079, 1136, 1337, 1468, 2216, 2546
MmeI TCCRAC 1 cut(s) 1741
Mph1103I ATGCAT 3 cut(s) 769, 1312, 1512
MroI TCCGGA 1 cut(s) 421
MroXI GAANNNNTTC 2 cut(s) 2038, 2420
MseI TTAA 6 cut(s) 21, 212, 465, 917, 936, 2562
MslI CAYNNNNRTG 3 cut(s) 1565, 2109, 2430
MspA1I CMGCKG 3 cut(s) 1493, 2140, 2279
MspCI CTTAAG 1 cut(s) 464
MspI CCGG 4 cut(s) 299, 422, 544, 1841
Mva1269I GAATGC 1 cut(s) 723
MvaI CCWGG 9 cut(s) 228, 528, 648, 730, 1373, 1557, 1966, 2323, 2653
MvnI CGCG 6 cut(s) 573, 847, 1135, 1974, 2279, 2591
NciI CCSGG 2 cut(s) 545, 1842
NdeI CATATG 3 cut(s) 763, 1512, 1588
NmuCI GTSAC 7 cut(s) 142, 629, 947, 2045, 2111, 2117, 2195
NsiI ATGCAT 3 cut(s) 769, 1312, 1512
NspI RCATGY 4 cut(s) 244, 1450, 1552, 1639
OliI CACNNNNGTG 1 cut(s) 2109
PaeI GCATGC 3 cut(s) 244, 1450, 1552
PagI TCATGA 1 cut(s) 1776
PaqCI CACCTGC 1 cut(s) 2605
PauI GCGCGC 1 cut(s) 1133
PciSI GCTCTTC 3 cut(s) 2029, 2357, 2619
PcsI WCGNNNNNNNCGW 3 cut(s) 1990, 2166, 2541
PctI GAATGC 1 cut(s) 723
PdmI GAANNNNTTC 2 cut(s) 2038, 2420
PfeI GAWTC 8 cut(s) 41, 101, 190, 337, 1153, 1664, 1961, 2421
PflFI GACNNNGTC 1 cut(s) 2051
PflMI CCANNNNNTGG 1 cut(s) 1589
PfoI TCCNGGA 1 cut(s) 2321
PleI GAGTC 7 cut(s) 1033, 1078, 1135, 1336, 1468, 2215, 2545
PmaCI CACGTG 1 cut(s) 2045
PmlI CACGTG 1 cut(s) 2045
PpsI GAGTC 7 cut(s) 1033, 1078, 1135, 1336, 1468, 2215, 2545
Ppu21I YACGTR 1 cut(s) 2045
PpuMI RGGWCCY 3 cut(s) 509, 1649, 2004
PsiI TTATAA 1 cut(s) 1530
Psp124BI GAGCTC 2 cut(s) 2369, 2519
Psp1406I AACGTT 1 cut(s) 185
Psp5II RGGWCCY 3 cut(s) 509, 1649, 2004
Psp6I CCWGG 9 cut(s) 226, 526, 646, 728, 1371, 1555, 1964, 2321, 2651
PspCI CACGTG 1 cut(s) 2045
PspEI GGTNACC 1 cut(s) 142
PspFI CCCAGC 1 cut(s) 2136
PspGI CCWGG 9 cut(s) 226, 526, 646, 728, 1371, 1555, 1964, 2321, 2651
PspOMI GGGCCC 2 cut(s) 1516, 1624
PspPPI RGGWCCY 3 cut(s) 509, 1649, 2004
PstNI CAGNNNCTG 1 cut(s) 1399
PsuI RGATCY 1 cut(s) 1714
PsyI GACNNNGTC 1 cut(s) 2051
PteI GCGCGC 1 cut(s) 1133
PvuII CAGCTG 1 cut(s) 1493
RsaI GTAC 6 cut(s) 124, 225, 1087, 2482, 2500, 2588
RsaNI GTAC 6 cut(s) 123, 224, 1086, 2481, 2499, 2587
RseI CAYNNNNRTG 3 cut(s) 1565, 2109, 2430
SacI GAGCTC 2 cut(s) 2369, 2519
SacII CCGCGG 1 cut(s) 2280
SalI GTCGAC 1 cut(s) 2054
SapI GCTCTTC 3 cut(s) 2029, 2357, 2619
SaqAI TTAA 6 cut(s) 21, 212, 465, 917, 936, 2562
ScaI AGTACT 1 cut(s) 1087
SchI GAGTC 7 cut(s) 1033, 1079, 1136, 1337, 1468, 2216, 2546
SduI GDGCHC 7 cut(s) 1369, 1520, 1597, 1628, 2136, 2369, 2519
SfaNI GCATC 9 cut(s) 169, 898, 1039, 1187, 1297, 1319, 1361, 1497, 1680
Sfr303I CCGCGG 1 cut(s) 2280
SgrBI CCGCGG 1 cut(s) 2280
SinI GGWCC 8 cut(s) 59, 509, 732, 1649, 1763, 1969, 2004, 2155
SmiMI CAYNNNNRTG 3 cut(s) 1565, 2109, 2430
SmlI CTYRAG 2 cut(s) 464, 1479
SmoI CTYRAG 2 cut(s) 464, 1479
SphI GCATGC 3 cut(s) 244, 1450, 1552
SspI AATATT 1 cut(s) 96
SspMI CTAG 6 cut(s) 309, 1940, 2262, 2487, 2541, 2643
SstI GAGCTC 2 cut(s) 2369, 2519
StyI CCWWGG 2 cut(s) 1357, 2151
TaaI ACNGT 5 cut(s) 59, 1082, 2111, 2117, 2201
TaiI ACGT 3 cut(s) 188, 2047, 2197
TaqI TCGA 9 cut(s) 132, 583, 1060, 2055, 2219, 2402, 2582, 2633, 2659
TaqII GACCGA 3 cut(s) 2040, 2046, 2136
TatI WGTACW 2 cut(s) 1085, 2480
TauI GCSGC 7 cut(s) 2231, 2282, 2378, 2400, 2474, 2605, 2680
TfiI GAWTC 8 cut(s) 41, 101, 190, 337, 1153, 1664, 1961, 2421
Tru1I TTAA 6 cut(s) 21, 212, 465, 917, 936, 2562
Tru9I TTAA 6 cut(s) 21, 212, 465, 917, 936, 2562
TscAI CASTG 8 cut(s) 298, 405, 671, 724, 884, 990, 1108, 2512
TseFI GTSAC 7 cut(s) 142, 629, 947, 2045, 2111, 2117, 2195
TseI GCWGC 9 cut(s) 403, 809, 1137, 1175, 1390, 1490, 2243, 2459, 2468
Tsp45I GTSAC 7 cut(s) 142, 629, 947, 2045, 2111, 2117, 2195
TspGWI ACGGA 1 cut(s) 1396
TspRI CASTG 8 cut(s) 298, 405, 671, 724, 884, 990, 1108, 2512
Tth111I GACNNNGTC 1 cut(s) 2051
Van91I CCANNNNNTGG 1 cut(s) 1589
Vha464I CTTAAG 1 cut(s) 464
VpaK11BI GGWCC 8 cut(s) 59, 509, 732, 1649, 1763, 1969, 2004, 2155
XagI CCTNNNNNAGG 1 cut(s) 531
XapI RAATTY 5 cut(s) 17, 381, 1062, 1790, 1856
XbaI TCTAGA 1 cut(s) 2642
XceI RCATGY 4 cut(s) 244, 1450, 1552, 1639
XcmI CCANNNNNNNNNTGG 1 cut(s) 492
XmiI GTMKAC 2 cut(s) 79, 2055
XmnI GAANNNNTTC 2 cut(s) 2038, 2420
XspI CTAG 6 cut(s) 309, 1940, 2262, 2487, 2541, 2643
ZrmI AGTACT 1 cut(s) 1087
Zsp2I ATGCAT 3 cut(s) 769, 1312, 1512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.