RLG00000036586

DWNN domain, A CCHC-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001377
Physical Location & Seq
Forward (+)
82178112 .. 82182114
4003 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036586

Sequence Viewer

Length: 873 bp
ATGGCAGACGACGATGTCAACGACATTGATATGGGGTTGTCTCTGAGTCATTATATTCAGCACTGCCCTACAAATGGTGATCCAAACTATGACATCAAAAGAGTGAAACCACCCACTGGCATTCCCAAGTCCATGGTGATAGCAACCCCAGATGGCTCATATGCACTGCCGAGTGGTGCAGTAGCTGTATTGAGGCCGAATGAGGCTGCTTTTGAGAAAGAGATCGAAGGTTTACTGTCTACGCGTTCTGTTGGTGGTTTACCACCTGAGCTACACTGCCCCTTGTGCAAGGAAGTGATGAAAGATGCTGTTTTAACGAGCAAGTGTTGCTTTAAGAGCTTTTGTGATAAGTGTATCAGGAATTACATTACCTCAAAGTCAGTGTGTGTCTGTGGGGCTACAAATACACTTGCAGATGATCTACTGCCAAATAAGACTCTCAGGGATACCATCAATCGAATCTTGGAGTCTGGTAACAGTAGCACTGATAACGCTGGGAGTGCTTTCCAAGTTCAAGGAAAGAAAAGGAAAAAGAAGACAGTTCGCATGCCTTCAAACGGTATGACTTCTTCTCTCTTTTTTGTAAACAGCTTGGTTGTTATGAATACTCCTGTGATGGTTGAGTTGGAAGGAGAGACTGACCCACTTGAGGAGTTCCAGAAAGAGTCGTTGCTATTCCCTGCGGATGTAGACTGCAACATATATGATCCAGACTACAACATGTGTGATCCGTGGAAACGGATAGAACTGGGGTGTTTGGATGGATGCCTTTGCATACACTCTCTGAATACTAAAGCTGGTGGGGATATTGAAGTCTGGTCCGATTCGTTCCATTCTGGCTTCTTGGTCCTGTATGACCAATACTCATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

291

Amino Acids

31.81

Weight (kDa)

4.94

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 14
AccB7I CCANNNNNTGG 1 cut(s) 116
AccI GTMKAC 2 cut(s) 239, 690
AccII CGCG 1 cut(s) 244
AciI CCGC 1 cut(s) 683
AclWI GGATC 3 cut(s) 74, 701, 722
AfiI CCNNNNNNNGG 4 cut(s) 74, 116, 557, 649
AflIII ACRYGT 2 cut(s) 242, 720
AgsI TTSAA 3 cut(s) 515, 555, 812
AluBI AGCT 5 cut(s) 185, 271, 339, 591, 797
AluI AGCT 5 cut(s) 185, 271, 339, 591, 797
Alw26I GTCTC 2 cut(s) 45, 629
AlwI GGATC 3 cut(s) 74, 701, 722
AlwNI CAGNNNCTG 1 cut(s) 185
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 206
AspS9I GGNCC 2 cut(s) 819, 847
AsuHPI GGTGA 2 cut(s) 89, 148
AvaII GGWCC 2 cut(s) 819, 847
BarI GAAGNNNNNNTAC 2 cut(s) 553, 585
BbsI GAAGAC 1 cut(s) 542
BbvI GCAGC 1 cut(s) 193
BccI CCATC 4 cut(s) 146, 458, 610, 755
BciVI GTATCC 1 cut(s) 439
BcoDI GTCTC 2 cut(s) 45, 629
BfuI GTATCC 1 cut(s) 439
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
Bme18I GGWCC 2 cut(s) 819, 847
BmgT120I GGNCC 2 cut(s) 819, 847
BmrI ACTGGG 1 cut(s) 758
BmsI GCATC 2 cut(s) 295, 755
BmuI ACTGGG 1 cut(s) 758
BpiI GAAGAC 1 cut(s) 542
Bpu10I CCTNAGC 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 668
BsaJI CCNNGG 2 cut(s) 132, 731
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 116, 557, 649
Bse1I ACTGG 2 cut(s) 121, 753
BseDI CCNNGG 2 cut(s) 132, 731
BseGI GGATG 3 cut(s) 691, 766, 770
BseLI CCNNNNNNNGG 4 cut(s) 74, 116, 557, 649
BseMII CTCAG 3 cut(s) 35, 258, 454
BseNI ACTGG 2 cut(s) 121, 753
BseRI GAGGAG 1 cut(s) 665
BseXI GCAGC 1 cut(s) 193
BseYI CCCAGC 1 cut(s) 494
BsgI GTGCAG 1 cut(s) 198
Bsh1236I CGCG 1 cut(s) 244
BshFI GGCC 1 cut(s) 196
BslI CCNNNNNNNGG 4 cut(s) 74, 116, 557, 649
BsmAI GTCTC 2 cut(s) 45, 629
BsmI GAATGC 1 cut(s) 120
BsnI GGCC 1 cut(s) 196
Bsp143I GATC 5 cut(s) 79, 222, 418, 706, 727
Bsp19I CCATGG 1 cut(s) 132
BspACI CCGC 1 cut(s) 683
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 3 cut(s) 36, 259, 453
BspFNI CGCG 1 cut(s) 244
BspPI GGATC 3 cut(s) 74, 701, 722
BsrI ACTGG 2 cut(s) 121, 753
BssECI CCNNGG 2 cut(s) 132, 731
BssMI GATC 5 cut(s) 79, 222, 418, 706, 727
BssT1I CCWWGG 1 cut(s) 132
Bst4CI ACNGT 4 cut(s) 237, 479, 541, 560
BstAPI GCANNNNNTGC 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 548
BstDEI CTNAG 3 cut(s) 44, 267, 440
BstDSI CCRYGG 2 cut(s) 132, 731
BstF5I GGATG 3 cut(s) 691, 766, 770
BstFNI CGCG 1 cut(s) 244
BstKTI GATC 5 cut(s) 82, 225, 421, 709, 730
BstMAI GTCTC 2 cut(s) 45, 629
BstMBI GATC 5 cut(s) 79, 222, 418, 706, 727
BstMWI GCNNNNNNNGC 4 cut(s) 285, 327, 336, 500
BstNSI RCATGY 2 cut(s) 550, 724
BstUI CGCG 1 cut(s) 244
BstV1I GCAGC 1 cut(s) 193
BstV2I GAAGAC 1 cut(s) 542
BstXI CCANNNNNNTGG 1 cut(s) 133
BsuI GTATCC 1 cut(s) 439
BsuRI GGCC 1 cut(s) 196
BtgI CCRYGG 2 cut(s) 132, 731
BtsCI GGATG 3 cut(s) 691, 766, 770
BtsI GCAGTG 3 cut(s) 61, 164, 274
BtsIMutI CAGTG 6 cut(s) 61, 114, 164, 274, 387, 483
Cac8I GCNNGC 1 cut(s) 548
CaiI CAGNNNCTG 1 cut(s) 185
Cfr13I GGNCC 2 cut(s) 819, 847
CviAII CATG 3 cut(s) 133, 547, 721
DdeI CTNAG 3 cut(s) 44, 267, 440
DpnI GATC 5 cut(s) 81, 224, 420, 708, 729
DpnII GATC 5 cut(s) 79, 222, 418, 706, 727
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
Eco130I CCWWGG 1 cut(s) 132
Eco47I GGWCC 2 cut(s) 819, 847
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
FaeI CATG 3 cut(s) 136, 550, 724
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FatI CATG 3 cut(s) 132, 546, 720
FauNDI CATATG 1 cut(s) 160
FblI GTMKAC 2 cut(s) 239, 690
Fnu4HI GCNGC 1 cut(s) 207
FokI GGATG 3 cut(s) 698, 773, 777
Fsp4HI GCNGC 1 cut(s) 207
GluI GCNGC 1 cut(s) 207
GsaI CCCAGC 1 cut(s) 498
HaeIII GGCC 1 cut(s) 196
Hin1II CATG 3 cut(s) 136, 550, 724
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 6 cut(s) 46, 436, 459, 467, 665, 824
HphI GGTGA 2 cut(s) 89, 148
Hpy166II GTNNAC 6 cut(s) 19, 233, 240, 260, 586, 691
Hpy188I TCNGA 3 cut(s) 45, 786, 823
Hpy188III TCNNGA 3 cut(s) 358, 658, 710
Hpy8I GTNNAC 6 cut(s) 19, 233, 240, 260, 586, 691
Hpy99I CGWCG 1 cut(s) 14
HpyAV CCTTC 3 cut(s) 221, 561, 623
HpyCH4III ACNGT 4 cut(s) 237, 479, 541, 560
HpyCH4V TGCA 6 cut(s) 164, 179, 288, 413, 696, 774
HpyF10VI GCNNNNNNNGC 4 cut(s) 285, 327, 336, 500
HpyF3I CTNAG 3 cut(s) 44, 267, 440
Hsp92II CATG 3 cut(s) 136, 550, 724
Kzo9I GATC 5 cut(s) 79, 222, 418, 706, 727
Lsp1109I GCAGC 1 cut(s) 193
LweI GCATC 2 cut(s) 295, 755
MaeIII GTNAC 1 cut(s) 473
MalI GATC 5 cut(s) 81, 224, 420, 708, 729
MboI GATC 5 cut(s) 79, 222, 418, 706, 727
MboII GAAGA 2 cut(s) 547, 561
MluCI AATT 1 cut(s) 361
MluI ACGCGT 1 cut(s) 242
MlyI GAGTC 4 cut(s) 55, 430, 476, 674
MmeI TCCRAC 1 cut(s) 606
MnlI CCTC 4 cut(s) 186, 196, 382, 643
MseI TTAA 3 cut(s) 314, 333, 871
MslI CAYNNNNRTG 1 cut(s) 29
Mva1269I GAATGC 1 cut(s) 120
MvnI CGCG 1 cut(s) 244
MwoI GCNNNNNNNGC 4 cut(s) 285, 327, 336, 500
NcoI CCATGG 1 cut(s) 132
NdeI CATATG 1 cut(s) 160
NdeII GATC 5 cut(s) 79, 222, 418, 706, 727
NlaIII CATG 3 cut(s) 136, 550, 724
NmeAIII GCCGAG 1 cut(s) 195
NspI RCATGY 2 cut(s) 550, 724
PaeI GCATGC 1 cut(s) 550
PciI ACATGT 1 cut(s) 720
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PctI GAATGC 1 cut(s) 120
PfeI GAWTC 2 cut(s) 459, 824
PflFI GACNNNGTC 1 cut(s) 14
PflMI CCANNNNNTGG 1 cut(s) 116
PkrI GCNGC 1 cut(s) 208
PleI GAGTC 4 cut(s) 54, 430, 475, 673
PpsI GAGTC 4 cut(s) 54, 430, 475, 673
PscI ACATGT 1 cut(s) 720
PspFI CCCAGC 1 cut(s) 494
PspPI GGNCC 2 cut(s) 819, 847
PstNI CAGNNNCTG 1 cut(s) 185
PsyI GACNNNGTC 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 29
SaqAI TTAA 3 cut(s) 314, 333, 871
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 5 cut(s) 79, 222, 418, 706, 727
Sau96I GGNCC 2 cut(s) 819, 847
SchI GAGTC 4 cut(s) 55, 430, 476, 674
SetI ASST 8 cut(s) 187, 232, 268, 273, 341, 374, 593, 799
SfaNI GCATC 2 cut(s) 295, 755
SinI GGWCC 2 cut(s) 819, 847
SmiMI CAYNNNNRTG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
SphI GCATGC 1 cut(s) 550
Sse9I AATT 1 cut(s) 361
SsiI CCGC 1 cut(s) 683
StyI CCWWGG 1 cut(s) 132
TaaI ACNGT 4 cut(s) 237, 479, 541, 560
TaqI TCGA 2 cut(s) 225, 457
TasI AATT 1 cut(s) 361
TfiI GAWTC 2 cut(s) 459, 824
Tru1I TTAA 3 cut(s) 314, 333, 871
Tru9I TTAA 3 cut(s) 314, 333, 871
TscAI CASTG 6 cut(s) 68, 121, 171, 281, 387, 490
TseI GCWGC 1 cut(s) 206
TspDTI ATGAA 2 cut(s) 314, 617
TspGWI ACGGA 2 cut(s) 720, 754
TspRI CASTG 6 cut(s) 68, 121, 171, 281, 387, 490
Tth111I GACNNNGTC 1 cut(s) 14
Van91I CCANNNNNTGG 1 cut(s) 116
VpaK11BI GGWCC 2 cut(s) 819, 847
XceI RCATGY 2 cut(s) 550, 724
XmiI GTMKAC 2 cut(s) 239, 690
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.