Rh1DG081000

DWNN domain, A CCHC-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001377
Physical Location & Seq
Reverse (-)
14776053 .. 14777006
954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG081000.1

Sequence Viewer

Length: 432 bp
ATGGTGATAGCAACCCCATATGGCTCATATGCACTGCCGAGTGGTGCAGTAGCTGTATTGAGGCCGAATGAGGCTGCTTTTGAGAAAGAGATCGAAGGTTTACCGTCAACGCGTTCTGTTGGTGATTTACCACCTGAGCTACACTGCCCCTTGTGCAAGGAAGTGATGAAAGATGCTGTTTTAACGAGCAAGTGTTGCTTTAAGAGCTTTTGTGATAAGTGTATCAGGAATTACATTACCTCAAAGTCAGTGTGTGTCTGTGGGGCTACAAATACACTTGCAGATGATCTACTGCCAAATAAGACTCTCAGGGATACCATCAATCGAATCTTGGAGTCTGGTAACAGTAGCACTGATAACACTGGGAGTGCTTTCCAAGTTCAAGGAAAGAAAAGGAAAAAGAAGAAAGTTCGCATGCCTTCAAACGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

143

Amino Acids

15.49

Weight (kDa)

9.06

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 112
AfiI CCNNNNNNNGG 1 cut(s) 425
AflIII ACRYGT 1 cut(s) 110
AgsI TTSAA 2 cut(s) 383, 423
AluBI AGCT 3 cut(s) 53, 139, 207
AluI AGCT 3 cut(s) 53, 139, 207
AlwNI CAGNNNCTG 1 cut(s) 53
AoxI GGCC 1 cut(s) 62
ApeKI GCWGC 1 cut(s) 74
AsuHPI GGTGA 2 cut(s) 16, 134
BbvI GCAGC 1 cut(s) 61
BccI CCATC 1 cut(s) 326
BciVI GTATCC 1 cut(s) 307
BfaI CTAG 1 cut(s) 430
BfuI GTATCC 1 cut(s) 307
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
BmrI ACTGGG 1 cut(s) 372
BmsI GCATC 1 cut(s) 163
BmuI ACTGGG 1 cut(s) 372
Bpu10I CCTNAGC 1 cut(s) 135
Bsc4I CCNNNNNNNGG 1 cut(s) 425
Bse1I ACTGG 1 cut(s) 367
BseLI CCNNNNNNNGG 1 cut(s) 425
BseMII CTCAG 2 cut(s) 126, 322
BseNI ACTGG 1 cut(s) 367
BseXI GCAGC 1 cut(s) 61
BsgI GTGCAG 1 cut(s) 66
Bsh1236I CGCG 1 cut(s) 112
BshFI GGCC 1 cut(s) 64
BslI CCNNNNNNNGG 1 cut(s) 425
BsnI GGCC 1 cut(s) 64
Bsp143I GATC 2 cut(s) 90, 286
BspANI GGCC 1 cut(s) 64
BspCNI CTCAG 2 cut(s) 127, 321
BspFNI CGCG 1 cut(s) 112
BsrI ACTGG 1 cut(s) 367
BssMI GATC 2 cut(s) 90, 286
Bst4CI ACNGT 2 cut(s) 105, 347
BstAPI GCANNNNNTGC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 416
BstDEI CTNAG 2 cut(s) 135, 308
BstFNI CGCG 1 cut(s) 112
BstKTI GATC 2 cut(s) 93, 289
BstMBI GATC 2 cut(s) 90, 286
BstMWI GCNNNNNNNGC 3 cut(s) 153, 195, 204
BstNSI RCATGY 1 cut(s) 418
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 61
BsuI GTATCC 1 cut(s) 307
BsuRI GGCC 1 cut(s) 64
BtsI GCAGTG 2 cut(s) 32, 142
BtsIMutI CAGTG 5 cut(s) 32, 142, 255, 351, 360
Cac8I GCNNGC 1 cut(s) 416
CaiI CAGNNNCTG 1 cut(s) 53
CviAII CATG 1 cut(s) 415
CviJI RGCY 8 cut(s) 24, 53, 64, 74, 139, 207, 266, 429
CviKI_1 RGCY 8 cut(s) 24, 53, 64, 74, 139, 207, 266, 429
DdeI CTNAG 2 cut(s) 135, 308
DpnI GATC 2 cut(s) 92, 288
DpnII GATC 2 cut(s) 90, 286
FaeI CATG 1 cut(s) 418
FaiI YATR 5 cut(s) 19, 21, 28, 30, 416
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FatI CATG 1 cut(s) 414
FauNDI CATATG 2 cut(s) 19, 28
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
FspBI CTAG 1 cut(s) 430
GluI GCNGC 1 cut(s) 75
HaeIII GGCC 1 cut(s) 64
Hin1II CATG 1 cut(s) 418
HincII GTYRAC 1 cut(s) 108
HindII GTYRAC 1 cut(s) 108
HinfI GANTC 3 cut(s) 304, 327, 335
HphI GGTGA 2 cut(s) 16, 134
Hpy166II GTNNAC 2 cut(s) 101, 108
Hpy188III TCNNGA 1 cut(s) 226
Hpy8I GTNNAC 2 cut(s) 101, 108
HpyAV CCTTC 2 cut(s) 89, 429
HpyCH4III ACNGT 2 cut(s) 105, 347
HpyCH4V TGCA 4 cut(s) 32, 47, 156, 281
HpyF10VI GCNNNNNNNGC 3 cut(s) 153, 195, 204
HpyF3I CTNAG 2 cut(s) 135, 308
Hsp92II CATG 1 cut(s) 418
Kzo9I GATC 2 cut(s) 90, 286
LpnPI CCDG 5 cut(s) 147, 211, 295, 324, 348
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 163
MaeI CTAG 1 cut(s) 430
MaeIII GTNAC 1 cut(s) 341
MalI GATC 2 cut(s) 92, 288
MboI GATC 2 cut(s) 90, 286
MboII GAAGA 1 cut(s) 415
MluCI AATT 1 cut(s) 229
MluI ACGCGT 1 cut(s) 110
MlyI GAGTC 2 cut(s) 298, 344
MnlI CCTC 3 cut(s) 54, 64, 250
MseI TTAA 2 cut(s) 182, 201
MvnI CGCG 1 cut(s) 112
MwoI GCNNNNNNNGC 3 cut(s) 153, 195, 204
NdeI CATATG 2 cut(s) 19, 28
NdeII GATC 2 cut(s) 90, 286
NlaIII CATG 1 cut(s) 418
NmeAIII GCCGAG 1 cut(s) 63
NspI RCATGY 1 cut(s) 418
PaeI GCATGC 1 cut(s) 418
PfeI GAWTC 1 cut(s) 327
PkrI GCNGC 1 cut(s) 76
PleI GAGTC 2 cut(s) 298, 343
PpsI GAGTC 2 cut(s) 298, 343
PstNI CAGNNNCTG 1 cut(s) 53
SaqAI TTAA 2 cut(s) 182, 201
SatI GCNGC 1 cut(s) 75
Sau3AI GATC 2 cut(s) 90, 286
SchI GAGTC 2 cut(s) 298, 344
SetI ASST 6 cut(s) 55, 100, 136, 141, 209, 242
SfaNI GCATC 1 cut(s) 163
SphI GCATGC 1 cut(s) 418
Sse9I AATT 1 cut(s) 229
SspMI CTAG 1 cut(s) 430
TaaI ACNGT 2 cut(s) 105, 347
TaqI TCGA 2 cut(s) 93, 325
TasI AATT 1 cut(s) 229
TfiI GAWTC 1 cut(s) 327
Tru1I TTAA 2 cut(s) 182, 201
Tru9I TTAA 2 cut(s) 182, 201
TscAI CASTG 5 cut(s) 39, 149, 255, 358, 367
TseI GCWGC 1 cut(s) 74
TspDTI ATGAA 1 cut(s) 182
TspRI CASTG 5 cut(s) 39, 149, 255, 358, 367
XceI RCATGY 1 cut(s) 418
XspI CTAG 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.