Rroxscaffold_1G00001780

DWNN domain, A CCHC-type zinc finger protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001377
Physical Location & Seq
Forward (+)
2002587 .. 2014564
11978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00001780.1

Sequence Viewer

Length: 300 bp
ATGAGAGATGCAGAGAAGGAGGCTGCACCCAGGCCTTGCTTCCTAATCTGGGTCTTTACCGTCCTCTACTCACTCTTGCTTGTTTTGTTGATCAATGGTTATTTCGGACGGTGCTTATATTTGGCACTTTTGTATTCAGGTCATTATATTCAACACTGCCCTACAAATGGTGATCCAAACTATGACATCAAAAGAGTGAAGCCACCCACCGGCATTCCCAAGTCCATGTTGATAGCAACCCCGGATGGCTCATATGCACCGCCGAGTGGTGCAGTAGCCGTATTGAGGCCGAATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

99

Amino Acids

10.98

Weight (kDa)

8.49

Isoelectric Point (pI)

27.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 260
AclWI GGATC 1 cut(s) 167
AfiI CCNNNNNNNGG 5 cut(s) 49, 167, 209, 266, 285
AgsI TTSAA 1 cut(s) 152
AjnI CCWGG 1 cut(s) 29
AlwI GGATC 1 cut(s) 167
AoxI GGCC 2 cut(s) 32, 287
ApeKI GCWGC 1 cut(s) 23
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 182
BbvI GCAGC 1 cut(s) 10
BccI CCATC 1 cut(s) 239
BceAI ACGGC 1 cut(s) 263
BciT130I CCWGG 1 cut(s) 31
BclI TGATCA 1 cut(s) 90
BcnI CCSGG 1 cut(s) 242
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme1390I CCNGG 2 cut(s) 31, 242
BmrFI CCNGG 2 cut(s) 31, 242
BpuMI CCSGG 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 29, 240
Bsc4I CCNNNNNNNGG 5 cut(s) 49, 167, 209, 266, 285
Bse118I RCCGGY 1 cut(s) 209
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 2 cut(s) 29, 240
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 5 cut(s) 49, 167, 209, 266, 285
BseXI GCAGC 1 cut(s) 10
BsgI GTGCAG 2 cut(s) 9, 291
BshFI GGCC 2 cut(s) 34, 289
BsiSI CCGG 2 cut(s) 210, 242
BslI CCNNNNNNNGG 5 cut(s) 49, 167, 209, 266, 285
BsmI GAATGC 1 cut(s) 213
BsnI GGCC 2 cut(s) 34, 289
Bsp143I GATC 2 cut(s) 90, 172
BspACI CCGC 1 cut(s) 260
BspANI GGCC 2 cut(s) 34, 289
BspPI GGATC 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 209
BssAI RCCGGY 1 cut(s) 209
BssECI CCNNGG 2 cut(s) 29, 240
BssMI GATC 2 cut(s) 90, 172
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 2 cut(s) 61, 111
BstF5I GGATG 1 cut(s) 250
BstKTI GATC 2 cut(s) 93, 175
BstMBI GATC 2 cut(s) 90, 172
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 2 cut(s) 29, 240
BstV1I GCAGC 1 cut(s) 10
BsuRI GGCC 2 cut(s) 34, 289
BtsCI GGATG 1 cut(s) 250
BtsI GCAGTG 1 cut(s) 154
BtsIMutI CAGTG 1 cut(s) 154
Cfr10I RCCGGY 1 cut(s) 209
CviAII CATG 1 cut(s) 226
CviJI RGCY 6 cut(s) 23, 34, 202, 249, 278, 289
CviKI_1 RGCY 6 cut(s) 23, 34, 202, 249, 278, 289
DpnI GATC 2 cut(s) 92, 174
DpnII GATC 2 cut(s) 90, 172
Eco147I AGGCCT 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 29
FaeI CATG 1 cut(s) 229
FaiI YATR 6 cut(s) 118, 147, 183, 227, 253, 255
FatI CATG 1 cut(s) 225
FauNDI CATATG 1 cut(s) 253
FbaI TGATCA 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 1 cut(s) 257
Fsp4HI GCNGC 1 cut(s) 24
GluI GCNGC 1 cut(s) 24
HaeIII GGCC 2 cut(s) 34, 289
HapII CCGG 2 cut(s) 210, 242
Hin1II CATG 1 cut(s) 229
HpaII CCGG 2 cut(s) 210, 242
HphI GGTGA 1 cut(s) 182
Hpy188I TCNGA 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 2 cut(s) 61, 111
HpyCH4V TGCA 4 cut(s) 11, 26, 257, 272
Hsp92II CATG 1 cut(s) 229
Ksp22I TGATCA 1 cut(s) 90
Kzo9I GATC 2 cut(s) 90, 172
LpnPI CCDG 6 cut(s) 16, 34, 43, 123, 223, 255
Lsp1109I GCAGC 1 cut(s) 10
MalI GATC 2 cut(s) 92, 174
MboI GATC 2 cut(s) 90, 172
MnlI CCTC 3 cut(s) 13, 74, 279
MspI CCGG 2 cut(s) 210, 242
MspR9I CCNGG 2 cut(s) 31, 242
Mva1269I GAATGC 1 cut(s) 213
MvaI CCWGG 1 cut(s) 31
NciI CCSGG 1 cut(s) 242
NdeI CATATG 1 cut(s) 253
NdeII GATC 2 cut(s) 90, 172
NlaIII CATG 1 cut(s) 229
NmeAIII GCCGAG 1 cut(s) 288
PceI AGGCCT 1 cut(s) 34
PctI GAATGC 1 cut(s) 213
PkrI GCNGC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 2 cut(s) 90, 172
ScrFI CCNGG 2 cut(s) 31, 242
SetI ASST 1 cut(s) 142
SseBI AGGCCT 1 cut(s) 34
SsiI CCGC 1 cut(s) 260
StuI AGGCCT 1 cut(s) 34
StyD4I CCNGG 2 cut(s) 29, 240
TaaI ACNGT 2 cut(s) 61, 111
TscAI CASTG 1 cut(s) 161
TseI GCWGC 1 cut(s) 23
TspRI CASTG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.