AT5G47430

DWNN domain, a CCHC-type zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001377
Physical Location & Seq
Reverse (-)
19235555 .. 19241263
5709 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47430.2

Sequence Viewer

Length: 2679 bp
ATGGCAATTTATTACAAGTTTAAGAGTGCAAGGGATTATGATACCATTGCCATGGATGGTCCTTTTATATCCGTCGGTATTCTCAAAGACAAAATTTTCGAAACTAAGCATTTGGGCACTGGTAAAGACCTTGATATTGTCGTCTCCAATGCCCAAACTAACGAAGAGTATCTGGATGAAGCAATGTTAATCCCAAAGAATACATCTGTCCTTATTCGTCGGGTTCCTGGACGTCCTCGCATCACAGTTATTACCACACAAGAGCCTAGAATCCAGAATAAAGTGGAAGACGTTCAGGCTGAAACCACCAATTTTCCTGTTGCTGATCCATCTGCTGCTGAATTTCCTGAAGATGAGTATGACGAGTTTGGGACTGATCTTTATTCCATTCCTGATACCCAAGATGCCCAGCATATTATTCCACGTCCTCATCTTGCAACCGCAGACGACAAAGTAGATGAAGAAAGCAAAATTCAGGCGCTGATTGACACTCCAGCACTTGACTGGCAACAACGACAAGGTCAAGATACTTTTGGAGCTGGTAGAGGTTATGGGAGGGGTATGCCTGGAAGGATGAATGGACGTGGTTTTGGAATGGAAAGGAAAACGCCACCTCCAGGTTATGTGTGCCATCGTTGCAATATCCCTGGACATTTTATTCAGCATTGCCCCACAAATGGAGACCCTAACTATGATGTTAAGAGAGTTAAGCCACCTACTGGTATCCCCAAGTCCATGTTGATGGCGACCCCAGATGGTTCTTATTCCTTGCCAAGTGGCGCAGTTGCAGTTCTGAAACCAAATGAGGATGCTTTTGAGAAGGAAATGGAGGGATTGCCATCAACAACACGTTCTGTAGGAGAACTTCCACCTGAGCTAAAATGCCCATTATGCAAAGAAGTGATGAAAGATGCTGCGCTTACAAGCAAATGTTGTTACAAGAGCTTCTGTGACAAGTGTATCAGAGATCACATTATTTCAAAGTCAATGTGTGTTTGTGGAAGATCAGATGTACTTGCTGACGACCTTCTACCAAACAAGACCCTCAGGGATACCATAAACCGTATTTTGGAAGCTGGAAACGATAGCACTGAGAATGTGGGCAGCGTTGGCCATATCCCAGATTTGGAGTCTGCACGCTGTCCACCTCCCAAGGCTCTATCTCCTACTACATCTGTTGCATCTAAAGGCGAGAAGAAACCAGTACTTAGTAACAATAATGATGCTTCAACTTTAAAGGCGCCAATGGAAGTTGCAGAGATCACAAGTGCCCCTCGTGCATCTGCAGAAGTGAATGTAGAAAAGCCAGTTGATGCATGTGAAAGCACTCAAGGGTCCGTGATTGTGAAAGAAGCAACAGTGTCAAAGTTGAATACGCAAGCCCCCAAGGAAGAAATGCAGCAGCAGGTTGCTGCTGGAGAGCCAGGAAAAAAGAAGAAAAAGAAACCAAGAGTGCCTGGGAATGACATGCAATGGAATCCTGTGCCAGATCTAGCAGGCCCTGACTATATGATGCAAATGGGACCAGGTCCGCAGTACTTCAACGGCATGCAACCTGGCTTCAATGGCGTACAACCAGGCTTCAACGGTGTTCAACCTGGCTTCAATGGCTTTCACCCTGGCTTCAATGGATTTGGAGGCCCGTTTCCAGGCGCAATGCCTCCATTTATGGGTTACGGATTAAACCCAATGGACATGGGATTTGGTGGGGGTATGAATATGATGCATCCAGATCCATTCATGGCACAAGGATTTGGGTTCCCTAATATACCACCACCCCATAGGGACCTAGCTGAAATGGGAAACCGAATGAATCTCCAACGTGCTATGATGGGCAGAGATGAAGCCGAAGCCCGAAACGCTGAGATGTTAAGAAAACGTGAAAACGAGAGACGACCTGAAGGTGGGAAGATGTTTAGGGATGGAGAGAATAGCAGAATGATGATGAACAACGGTACTTCAGCCTCTGCATCATCCATCAACCCTAATAAATCTAGACAAGCACCTCCACCACCAATCCACGATTACGATCGCCGGAGACGACCGGAGAAGAGACTATCCCCAGAGCATCCGCCTACGCGTAAAAACATTTCCCCGTCTCGCGACTCCAAGAGAAAATCCGAGCGTTATCCTGATGAACGAGATCGGCAACGCGACCGTGAGAGGTCACGTCACCAAGACGTAGATCGTGAACACGACCGTACTCGCGACCGTCGCGATGAAGACAGAAGCCGAGATCATCGCCACCACCGTGGTGAAACCGAACGCAGCCAACATCACCACCGCAAGAGATCGGAACCGCCTTCATCGGAGCCACCAGTCCCTGCTACTAAAGCAGAGATCGAGAATAATCTTAAGTCTAGCGTATTCGCTCGGATAAGTTTTCCGGAGGAAGAAACATCTTCTGGTAAACGAAGAAAGGTGCCTTCCTCTTCTTCTACTTCTGTTACGGATCCATCTGCTTCCGCCTCTGCCGCAGCCGCCGTGGGAACATCAGTTCACCGACACAGTAGTCGGAAGGAAATAGAAGTAGCAGATTATGAATCTAGTGATGAAGATAGGCATTTCAAGAGGAAGCCGTCAAGGTACGCGCGATCACCACCGGTGGTGGTTAGTGATGTGAGTGAAGATAAACTCCGATACTCAAAACGTGGAAAGGGGGAGAGATCTCGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000209 GO:0000302 GO:0001101 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005730 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0006275 GO:0006325 GO:0006464 GO:0006479 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006970 GO:0006974 GO:0006979 GO:0006996 GO:0008150 GO:0008152 GO:0008213 GO:0009056 GO:0009057 GO:0009414 GO:0009415 GO:0009628 GO:0009635 GO:0009636 GO:0009651 GO:0009743 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010555 GO:0010556 GO:0015630 GO:0016043 GO:0016567 GO:0016569 GO:0016570 GO:0016571 GO:0016604 GO:0016607 GO:0016740 GO:0018193 GO:0018195 GO:0018216 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032259 GO:0032446 GO:0032991 GO:0033554 GO:0034969 GO:0034971 GO:0036211 GO:0042221 GO:0042493 GO:0042542 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046677 GO:0046686 GO:0048518 GO:0048519 GO:0048583 GO:0048584 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051276 GO:0051603 GO:0051716 GO:0060255 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0070887 GO:0071310 GO:0071704 GO:0071840 GO:0072756 GO:0080090 GO:0080134 GO:0097237 GO:0140096 GO:1901562 GO:1901564 GO:1901565 GO:1901575 GO:1901700 GO:1902882 GO:1902883 GO:1902884 GO:2000112
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DWNN zf-CCHC_2

Protein Analysis

892

Amino Acids

99.08

Weight (kDa)

8.47

Isoelectric Point (pI)

50.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_2 PF13696 144 - 164 2.9e-10 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2511
AatII GACGTC 1 cut(s) 235
Acc36I ACCTGC 1 cut(s) 1396
AccB1I GGYRCC 2 cut(s) 1240, 2422
AccB7I CCANNNNNTGG 1 cut(s) 719
AccII CGCG 7 cut(s) 2080, 2103, 2154, 2208, 2217, 2591, 2593
AccIII TCCGGA 1 cut(s) 2386
AciI CCGC 8 cut(s) 441, 1532, 2072, 2284, 2300, 2466, 2475, 2481
AclWI GGATC 4 cut(s) 320, 1727, 2447, 2460
AcoI YGGCCR 1 cut(s) 1111
AcsI RAATTY 3 cut(s) 93, 341, 471
AcuI CTGAAG 3 cut(s) 369, 1920, 1944
AcyI GRCGYC 2 cut(s) 232, 1241
AfaI GTAC 7 cut(s) 1014, 1206, 1538, 1572, 1957, 2203, 2588
AfiI CCNNNNNNNGG 8 cut(s) 617, 677, 719, 1069, 1126, 1649, 1670, 1904
AflII CTTAAG 1 cut(s) 2354
AflIII ACRYGT 2 cut(s) 848, 2078
AgeI ACCGGT 1 cut(s) 2602
AjiI CACGTC 3 cut(s) 425, 584, 2171
AleI CACNNNNGTG 2 cut(s) 2250, 2253
AloI GAACNNNNNNTCC 2 cut(s) 2481, 2513
AluBI AGCT 6 cut(s) 539, 877, 945, 1076, 1793, 2675
AluI AGCT 6 cut(s) 539, 877, 945, 1076, 1793, 2675
Alw26I GTCTC 6 cut(s) 148, 675, 1885, 2032, 2047, 2103
AlwI GGATC 4 cut(s) 320, 1727, 2447, 2460
AlwNI CAGNNNCTG 4 cut(s) 481, 1502, 1967, 2324
Ama87I CYCGRG 1 cut(s) 2670
Aor13HI TCCGGA 1 cut(s) 2386
AoxI GGCC 3 cut(s) 1111, 1498, 1639
ApeKI GCWGC 8 cut(s) 335, 914, 1104, 1399, 1402, 1412, 2268, 2477
ApoI RAATTY 3 cut(s) 93, 341, 471
ArsI GACNNNNNNTTYG 4 cut(s) 80, 112, 1685, 1717
AsiGI ACCGGT 1 cut(s) 2602
Asp700I GAANNNNTTC 1 cut(s) 291
AspLEI GCGC 6 cut(s) 481, 782, 919, 1243, 1655, 2593
AspS9I GGNCC 7 cut(s) 59, 1335, 1499, 1523, 1529, 1640, 1786
AsuHPI GGTGA 6 cut(s) 1607, 2165, 2267, 2270, 2492, 2589
AsuII TTCGAA 1 cut(s) 99
AvaI CYCGRG 1 cut(s) 2670
AvaII GGWCC 5 cut(s) 59, 1335, 1523, 1529, 1786
AxyI CCTNAGG 1 cut(s) 1046
BaeGI GKGCMC 2 cut(s) 119, 1273
BaeI ACNNNNGTAYC 2 cut(s) 943, 976
BalI TGGCCA 1 cut(s) 1113
BamHI GGATCC 1 cut(s) 2452
BanI GGYRCC 2 cut(s) 1240, 2422
BarI GAAGNNNNNNTAC 2 cut(s) 849, 881
BauI CACGAG 1 cut(s) 1275
BbsI GAAGAC 2 cut(s) 294, 2229
BbvI GCAGC 8 cut(s) 322, 901, 1116, 1399, 1411, 1414, 2280, 2489
BceAI ACGGC 3 cut(s) 1561, 2468, 2563
BciVI GTATCC 2 cut(s) 734, 1045
BcoDI GTCTC 6 cut(s) 148, 675, 1885, 2032, 2047, 2103
BfaI CTAG 6 cut(s) 267, 1493, 1790, 1995, 2361, 2547
BfmI CTRYAG 2 cut(s) 855, 1284
BfoI RGCGCY 2 cut(s) 482, 1244
BfrI CTTAAG 1 cut(s) 2354
BfuAI ACCTGC 1 cut(s) 1396
BfuI GTATCC 2 cut(s) 734, 1045
BglII AGATCT 2 cut(s) 1489, 2666
BmcAI AGTACT 2 cut(s) 1206, 1538
Bme18I GGWCC 5 cut(s) 59, 1335, 1523, 1529, 1786
BmeT110I CYCGRG 1 cut(s) 2670
BmgBI CACGTC 3 cut(s) 425, 584, 2171
BmgT120I GGNCC 7 cut(s) 59, 1335, 1499, 1523, 1529, 1640, 1786
BpiI GAAGAC 2 cut(s) 294, 2229
BpmI CTGGAG 3 cut(s) 477, 600, 1437
Bpu10I CCTNAGC 1 cut(s) 873
Bpu14I TTCGAA 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 1314
BsaBI GATNNNNATC 2 cut(s) 838, 2028
BsaHI GRCGYC 2 cut(s) 232, 1241
BsaI GGTCTC 1 cut(s) 675
BsaJI CCNNGG 8 cut(s) 51, 646, 1152, 1386, 1457, 1618, 2251, 2484
BsaWI WCCGGW 3 cut(s) 2044, 2386, 2602
BsaXI ACNNNNNCTCC 2 cut(s) 598, 628
Bsc4I CCNNNNNNNGG 8 cut(s) 617, 677, 719, 1069, 1126, 1649, 1670, 1904
Bse118I RCCGGY 1 cut(s) 2602
Bse1I ACTGG 6 cut(s) 124, 509, 724, 1202, 1307, 2318
Bse21I CCTNAGG 1 cut(s) 1046
Bse3DI GCAATG 5 cut(s) 45, 189, 664, 1478, 1662
Bse8I GATNNNNATC 2 cut(s) 838, 2028
BseAI TCCGGA 1 cut(s) 2386
BseDI CCNNGG 8 cut(s) 51, 646, 1152, 1386, 1457, 1618, 2251, 2484
BseGI GGATG 8 cut(s) 61, 181, 579, 814, 1726, 1927, 1973, 2068
BseJI GATNNNNATC 2 cut(s) 838, 2028
BseLI CCNNNNNNNGG 8 cut(s) 617, 677, 719, 1069, 1126, 1649, 1670, 1904
BseMI GCAATG 5 cut(s) 45, 189, 664, 1478, 1662
BseMII CTCAG 4 cut(s) 864, 1060, 1083, 1854
BseNI ACTGG 6 cut(s) 124, 509, 724, 1202, 1307, 2318
BseSI GKGCMC 2 cut(s) 119, 1273
BseXI GCAGC 8 cut(s) 322, 901, 1116, 1399, 1411, 1414, 2280, 2489
BseYI CCCAGC 1 cut(s) 408
BsgI GTGCAG 1 cut(s) 1119
Bsh1236I CGCG 7 cut(s) 2080, 2103, 2154, 2208, 2217, 2591, 2593
Bsh1285I CGRYCG 5 cut(s) 2032, 2045, 2158, 2200, 2212
BshFI GGCC 3 cut(s) 1113, 1500, 1641
BshNI GGYRCC 2 cut(s) 1240, 2422
BshTI ACCGGT 1 cut(s) 2602
BsiEI CGRYCG 5 cut(s) 2032, 2045, 2158, 2200, 2212
BsiHKCI CYCGRG 1 cut(s) 2670
BsiSI CCGG 4 cut(s) 2035, 2045, 2387, 2603
BslFI GGGAC 4 cut(s) 385, 1536, 1799, 2306
BslI CCNNNNNNNGG 8 cut(s) 617, 677, 719, 1069, 1126, 1649, 1670, 1904
BsmAI GTCTC 6 cut(s) 148, 675, 1885, 2032, 2047, 2103
BsmBI CGTCTC 4 cut(s) 148, 1885, 2032, 2103
BsmFI GGGAC 4 cut(s) 385, 1536, 1799, 2306
BsnI GGCC 3 cut(s) 1113, 1500, 1641
Bso31I GGTCTC 1 cut(s) 675
BsoBI CYCGRG 1 cut(s) 2670
Bsp119I TTCGAA 1 cut(s) 99
Bsp1286I GDGCHC 2 cut(s) 119, 1273
Bsp13I TCCGGA 1 cut(s) 2386
Bsp19I CCATGG 1 cut(s) 51
Bsp68I TCGCGA 3 cut(s) 2103, 2208, 2217
BspACI CCGC 8 cut(s) 441, 1532, 2072, 2284, 2300, 2466, 2475, 2481
BspANI GGCC 3 cut(s) 1113, 1500, 1641
BspCNI CTCAG 4 cut(s) 865, 1059, 1084, 1855
BspEI TCCGGA 1 cut(s) 2386
BspFNI CGCG 7 cut(s) 2080, 2103, 2154, 2208, 2217, 2591, 2593
BspMAI CTGCAG 1 cut(s) 1288
BspMI ACCTGC 1 cut(s) 1396
BspPI GGATC 4 cut(s) 320, 1727, 2447, 2460
BspT104I TTCGAA 1 cut(s) 99
BspT107I GGYRCC 2 cut(s) 1240, 2422
BspTI CTTAAG 1 cut(s) 2354
BspTNI GGTCTC 1 cut(s) 675
BsrDI GCAATG 5 cut(s) 45, 189, 664, 1478, 1662
BsrFI RCCGGY 1 cut(s) 2602
BsrI ACTGG 6 cut(s) 124, 509, 724, 1202, 1307, 2318
BssAI RCCGGY 1 cut(s) 2602
BssECI CCNNGG 8 cut(s) 51, 646, 1152, 1386, 1457, 1618, 2251, 2484
BssNI GRCGYC 2 cut(s) 232, 1241
BssSI CACGAG 1 cut(s) 1275
BssT1I CCWWGG 3 cut(s) 51, 1152, 1386
Bst2BI CACGAG 1 cut(s) 1275
Bst6I CTCTTC 3 cut(s) 159, 2045, 2437
BstACI GRCGYC 2 cut(s) 232, 1241
BstAFI CTTAAG 1 cut(s) 2354
BstBI TTCGAA 1 cut(s) 99
BstC8I GCNNGC 4 cut(s) 1138, 1380, 1498, 1550
BstDEI CTNAG 6 cut(s) 105, 873, 1046, 1092, 1208, 1863
BstDSI CCRYGG 3 cut(s) 51, 2251, 2484
BstF5I GGATG 8 cut(s) 61, 181, 579, 814, 1726, 1927, 1973, 2068
BstFNI CGCG 7 cut(s) 2080, 2103, 2154, 2208, 2217, 2591, 2593
BstH2I RGCGCY 2 cut(s) 482, 1244
BstHHI GCGC 6 cut(s) 481, 782, 919, 1243, 1655, 2593
BstMAI GTCTC 6 cut(s) 148, 675, 1885, 2032, 2047, 2103
BstMCI CGRYCG 5 cut(s) 2032, 2045, 2158, 2200, 2212
BstNSI RCATGY 3 cut(s) 1320, 1471, 1552
BstSFI CTRYAG 2 cut(s) 855, 1284
BstSLI GKGCMC 2 cut(s) 119, 1273
BstUI CGCG 7 cut(s) 2080, 2103, 2154, 2208, 2217, 2591, 2593
BstV1I GCAGC 8 cut(s) 322, 901, 1116, 1399, 1411, 1414, 2280, 2489
BstV2I GAAGAC 2 cut(s) 294, 2229
BstX2I RGATCY 4 cut(s) 1489, 1732, 2452, 2666
BstXI CCANNNNNNTGG 3 cut(s) 52, 742, 2252
BstYI RGATCY 4 cut(s) 1489, 1732, 2452, 2666
Bsu36I CCTNAGG 1 cut(s) 1046
BsuI GTATCC 2 cut(s) 734, 1045
BsuRI GGCC 3 cut(s) 1113, 1500, 1641
BtgI CCRYGG 3 cut(s) 51, 2251, 2484
BtgZI GCGATG 2 cut(s) 2225, 2232
BtrI CACGTC 3 cut(s) 425, 584, 2171
BtsCI GGATG 8 cut(s) 61, 181, 579, 814, 1726, 1927, 1973, 2068
BtsIMutI CAGTG 3 cut(s) 117, 1089, 1365
BtuMI TCGCGA 3 cut(s) 2103, 2208, 2217
BveI ACCTGC 1 cut(s) 1396
Cac8I GCNNGC 4 cut(s) 1138, 1380, 1498, 1550
CaiI CAGNNNCTG 4 cut(s) 481, 1502, 1967, 2324
CfoI GCGC 6 cut(s) 481, 782, 919, 1243, 1655, 2593
Cfr10I RCCGGY 1 cut(s) 2602
Cfr13I GGNCC 7 cut(s) 59, 1335, 1499, 1523, 1529, 1640, 1786
CsiI ACCWGGT 1 cut(s) 1525
Csp6I GTAC 7 cut(s) 1013, 1205, 1537, 1571, 1956, 2202, 2587
CspAI ACCGGT 1 cut(s) 2602
CviAII CATG 7 cut(s) 52, 736, 1317, 1468, 1549, 1696, 1741
CviQI GTAC 7 cut(s) 1013, 1205, 1537, 1571, 1956, 2202, 2587
DdeI CTNAG 6 cut(s) 105, 873, 1046, 1092, 1208, 1863
DinI GGCGCC 1 cut(s) 1242
DraI TTTAAA 1 cut(s) 1236
DrdI GACNNNNNNGTC 1 cut(s) 2511
DseDI GACNNNNNNGTC 1 cut(s) 2511
EaeI YGGCCR 1 cut(s) 1111
Eam1104I CTCTTC 3 cut(s) 159, 2045, 2437
EarI CTCTTC 3 cut(s) 159, 2045, 2437
EciI GGCGGA 2 cut(s) 2061, 2455
Eco130I CCWWGG 3 cut(s) 51, 1152, 1386
Eco31I GGTCTC 1 cut(s) 675
Eco47I GGWCC 5 cut(s) 59, 1335, 1523, 1529, 1786
Eco57I CTGAAG 3 cut(s) 369, 1920, 1944
Eco81I CCTNAGG 1 cut(s) 1046
Eco88I CYCGRG 1 cut(s) 2670
EcoO109I RGGNCCY 2 cut(s) 1499, 1786
EcoT14I CCWWGG 3 cut(s) 51, 1152, 1386
EcoT22I ATGCAT 2 cut(s) 1318, 1728
EgeI GGCGCC 1 cut(s) 1242
EheI GGCGCC 1 cut(s) 1242
ErhI CCWWGG 3 cut(s) 51, 1152, 1386
Esp3I CGTCTC 4 cut(s) 148, 1885, 2032, 2103
FaeI CATG 7 cut(s) 55, 739, 1320, 1471, 1552, 1699, 1744
FaqI GGGAC 4 cut(s) 385, 1536, 1799, 2306
FatI CATG 7 cut(s) 51, 735, 1316, 1467, 1548, 1695, 1740
FokI GGATG 8 cut(s) 68, 188, 586, 821, 1713, 1934, 1960, 2055
FspBI CTAG 6 cut(s) 267, 1493, 1790, 1995, 2361, 2547
GlaI GCGC 6 cut(s) 480, 781, 918, 1242, 1654, 2592
GsaI CCCAGC 1 cut(s) 412
GsuI CTGGAG 3 cut(s) 477, 600, 1437
HaeII RGCGCY 2 cut(s) 482, 1244
HaeIII GGCC 3 cut(s) 1113, 1500, 1641
HapII CCGG 4 cut(s) 2035, 2045, 2387, 2603
HhaI GCGC 6 cut(s) 481, 782, 919, 1243, 1655, 2593
Hin1I GRCGYC 2 cut(s) 232, 1241
Hin1II CATG 7 cut(s) 55, 739, 1320, 1471, 1552, 1699, 1744
Hin6I GCGC 6 cut(s) 479, 780, 917, 1241, 1653, 2591
HinP1I GCGC 6 cut(s) 479, 780, 917, 1241, 1653, 2591
HinfI GANTC 6 cut(s) 270, 1130, 1477, 1813, 2105, 2543
HpaII CCGG 4 cut(s) 2035, 2045, 2387, 2603
HphI GGTGA 6 cut(s) 1607, 2165, 2267, 2270, 2492, 2589
Hpy166II GTNNAC 4 cut(s) 1145, 2192, 2411, 2500
Hpy188I TCNGA 9 cut(s) 795, 965, 1009, 2122, 2296, 2311, 2376, 2517, 2639
Hpy8I GTNNAC 4 cut(s) 1145, 2192, 2411, 2500
Hpy99I CGWCG 3 cut(s) 77, 222, 2217
HpyAV CCTTC 7 cut(s) 564, 814, 1037, 1895, 2313, 2436, 2512
HpyF3I CTNAG 6 cut(s) 105, 873, 1046, 1092, 1208, 1863
Hsp92I GRCGYC 2 cut(s) 232, 1241
Hsp92II CATG 7 cut(s) 55, 739, 1320, 1471, 1552, 1699, 1744
HspAI GCGC 6 cut(s) 479, 780, 917, 1241, 1653, 2591
KasI GGCGCC 1 cut(s) 1240
Kpn2I TCCGGA 1 cut(s) 2386
LmnI GCTCC 2 cut(s) 536, 2311
Lsp1109I GCAGC 8 cut(s) 322, 901, 1116, 1399, 1411, 1414, 2280, 2489
MabI ACCWGGT 1 cut(s) 1525
MaeI CTAG 6 cut(s) 267, 1493, 1790, 1995, 2361, 2547
MaeIII GTNAC 7 cut(s) 935, 950, 1211, 1673, 2166, 2171, 2446
MflI RGATCY 4 cut(s) 1489, 1732, 2452, 2666
MhlI GDGCHC 2 cut(s) 119, 1273
MlsI TGGCCA 1 cut(s) 1113
MluCI AATT 5 cut(s) 6, 93, 310, 341, 471
MluI ACGCGT 1 cut(s) 2078
MluNI TGGCCA 1 cut(s) 1113
Mly113I GGCGCC 1 cut(s) 1241
MlyI GAGTC 2 cut(s) 1139, 2099
MmeI TCCRAC 2 cut(s) 1843, 2495
Mox20I TGGCCA 1 cut(s) 1113
Mph1103I ATGCAT 2 cut(s) 1318, 1728
MroI TCCGGA 1 cut(s) 2386
MroXI GAANNNNTTC 1 cut(s) 291
MscI TGGCCA 1 cut(s) 1113
MseI TTAA 8 cut(s) 21, 188, 699, 708, 1235, 1682, 1871, 2355
MslI CAYNNNNRTG 4 cut(s) 50, 740, 2250, 2253
Msp20I TGGCCA 1 cut(s) 1113
MspCI CTTAAG 1 cut(s) 2354
MspI CCGG 4 cut(s) 2035, 2045, 2387, 2603
MvnI CGCG 7 cut(s) 2080, 2103, 2154, 2208, 2217, 2591, 2593
NarI GGCGCC 1 cut(s) 1241
NcoI CCATGG 1 cut(s) 51
NlaIII CATG 7 cut(s) 55, 739, 1320, 1471, 1552, 1699, 1744
NmeAIII GCCGAG 1 cut(s) 2258
NmuCI GTSAC 3 cut(s) 950, 2166, 2171
NruI TCGCGA 3 cut(s) 2103, 2208, 2217
NsiI ATGCAT 2 cut(s) 1318, 1728
NspI RCATGY 3 cut(s) 1320, 1471, 1552
NspV TTCGAA 1 cut(s) 99
OliI CACNNNNGTG 2 cut(s) 2250, 2253
PaeI GCATGC 1 cut(s) 1552
PaeR7I CTCGAG 1 cut(s) 2670
PcsI WCGNNNNNNNCGW 2 cut(s) 2038, 2248
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 4 cut(s) 270, 1477, 1813, 2543
PflFI GACNNNGTC 2 cut(s) 519, 1527
PflMI CCANNNNNTGG 1 cut(s) 719
PfoI TCCNGGA 1 cut(s) 226
PinAI ACCGGT 1 cut(s) 2602
Ple19I CGATCG 1 cut(s) 2032
PleI GAGTC 2 cut(s) 1138, 2099
PluTI GGCGCC 1 cut(s) 1244
PpsI GAGTC 2 cut(s) 1138, 2099
PpuMI RGGWCCY 1 cut(s) 1786
Psp5II RGGWCCY 1 cut(s) 1786
PspFI CCCAGC 1 cut(s) 408
PspPI GGNCC 7 cut(s) 59, 1335, 1499, 1523, 1529, 1640, 1786
PspPPI RGGWCCY 1 cut(s) 1786
PstI CTGCAG 1 cut(s) 1288
PstNI CAGNNNCTG 4 cut(s) 481, 1502, 1967, 2324
PsuI RGATCY 4 cut(s) 1489, 1732, 2452, 2666
PsyI GACNNNGTC 2 cut(s) 519, 1527
PvuI CGATCG 1 cut(s) 2032
RruI TCGCGA 3 cut(s) 2103, 2208, 2217
RsaI GTAC 7 cut(s) 1014, 1206, 1538, 1572, 1957, 2203, 2588
RsaNI GTAC 7 cut(s) 1013, 1205, 1537, 1571, 1956, 2202, 2587
RseI CAYNNNNRTG 4 cut(s) 50, 740, 2250, 2253
SaqAI TTAA 8 cut(s) 21, 188, 699, 708, 1235, 1682, 1871, 2355
Sau96I GGNCC 7 cut(s) 59, 1335, 1499, 1523, 1529, 1640, 1786
ScaI AGTACT 2 cut(s) 1206, 1538
SchI GAGTC 2 cut(s) 1139, 2099
SduI GDGCHC 2 cut(s) 119, 1273
SexAI ACCWGGT 1 cut(s) 1525
SfcI CTRYAG 2 cut(s) 855, 1284
SfoI GGCGCC 1 cut(s) 1242
Sfr274I CTCGAG 1 cut(s) 2670
SfuI TTCGAA 1 cut(s) 99
SgrAI CRCCGGYG 1 cut(s) 2602
SinI GGWCC 5 cut(s) 59, 1335, 1523, 1529, 1786
SlaI CTCGAG 1 cut(s) 2670
SmiMI CAYNNNNRTG 4 cut(s) 50, 740, 2250, 2253
SmlI CTYRAG 3 cut(s) 1329, 2354, 2670
SmoI CTYRAG 3 cut(s) 1329, 2354, 2670
SphI GCATGC 1 cut(s) 1552
Sse9I AATT 5 cut(s) 6, 93, 310, 341, 471
SsiI CCGC 8 cut(s) 441, 1532, 2072, 2284, 2300, 2466, 2475, 2481
SspDI GGCGCC 1 cut(s) 1240
SspMI CTAG 6 cut(s) 267, 1493, 1790, 1995, 2361, 2547
StyI CCWWGG 3 cut(s) 51, 1152, 1386
TaqI TCGA 3 cut(s) 99, 2343, 2671
TasI AATT 5 cut(s) 6, 93, 310, 341, 471
TatI WGTACW 3 cut(s) 1012, 1204, 1536
TauI GCSGC 2 cut(s) 2477, 2483
TfiI GAWTC 4 cut(s) 270, 1477, 1813, 2543
Tru1I TTAA 8 cut(s) 21, 188, 699, 708, 1235, 1682, 1871, 2355
Tru9I TTAA 8 cut(s) 21, 188, 699, 708, 1235, 1682, 1871, 2355
TscAI CASTG 3 cut(s) 124, 1096, 1365
TseFI GTSAC 3 cut(s) 950, 2166, 2171
TseI GCWGC 8 cut(s) 335, 914, 1104, 1399, 1402, 1412, 2268, 2477
Tsp45I GTSAC 3 cut(s) 950, 2166, 2171
TspGWI ACGGA 4 cut(s) 61, 1327, 1692, 2465
TspRI CASTG 3 cut(s) 124, 1096, 1365
Tth111I GACNNNGTC 2 cut(s) 519, 1527
Van91I CCANNNNNTGG 1 cut(s) 719
Vha464I CTTAAG 1 cut(s) 2354
VpaK11BI GGWCC 5 cut(s) 59, 1335, 1523, 1529, 1786
XapI RAATTY 3 cut(s) 93, 341, 471
XbaI TCTAGA 1 cut(s) 1994
XceI RCATGY 3 cut(s) 1320, 1471, 1552
XcmI CCANNNNNNNNNTGG 1 cut(s) 501
XhoI CTCGAG 1 cut(s) 2670
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 6 cut(s) 267, 1493, 1790, 1995, 2361, 2547
ZraI GACGTC 1 cut(s) 233
ZrmI AGTACT 2 cut(s) 1206, 1538
Zsp2I ATGCAT 2 cut(s) 1318, 1728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.