Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0012022

Physical Location & Seq

Genomic Coordinates Forward (+)

19362212 .. 19363279

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G018160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCCACCACCTCCCTCTCCATCTCTCCAAACCCTAGCTTCACCACCACCACCTCTCACAAACCCTCTCCCTCTCTCTCAACCCCAACCCACCTCAAATTCCCAACCACCACCTCCTCTCCCATCCCCGCCAAATCCCTATCCACCCTTCACCTCTCCCAAACCCCAACCCCACGCGCCACCTTCTCCACACGCGCCGCCGCAGCCTCCACCACTCCCTCCACCACCTTCCACGGCCTCTGCTACGTCGTCGGCGACAACATCGACACCGACCAGATCATCCCCGCCGAGTACCTCACCCTCGTCCCCTCCAACCCCTCCGAGTACGAGAAGCTCGGCTCCTACGCCCTCTGCGGCCTCCCGGCGTCCTACTCCACGCGCTTCGTCGACCCCAACGAGACCAAGTCCAAGTACTCCATCGTCATCGGCGGCGCCAACTTCGGCTGCGGCTCGTCCCGCGAGCACGCGCCGGTGGCTCTCGGCGCGGCGGGAGTGGCGGCGGTGGTGGCGGAGTCGTACGCGCGCATCTTCTTCAGGAACTCGGTGGCCACCGGCGAGGTGTACCCGCTGGAATCGGAGACGAGGATTTGCGAGGAGTGCAGGACCGGTGATGTGGTGAGCATTGAGCTGAGCGAGAGCCGTCTGATCAATCACACGACTGGGAAAGAGTATGTGTTGAAGCCGATCGGGGATGCCGGTCCGGTTATCAGAGCCGGTGGGATATTTGCTTATGCCAGAGAGGCTGGGATGATTCCAACTTTGTCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003861 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0016829 GO:0016835 GO:0016836 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0048229 GO:0048856 GO:0050896 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase_C

Protein Analysis

256

Amino Acids

26.94

Weight (kDa)

6.3

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase_C	PF00694	137 - 185	1.4e-17	Aconitase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43090 AT2G43090
fragaria_vesca	FvH4_5g19250 FvH4_5g19250
malus_domestica	MD04G1062100.v1.1 MD06G1055800.v1.1
prunus_persica	Prupe.5G066300_v2.0.a1
pyrus_communis	pycom04g05570 pycom06g04670
rosa_laevigata	RLG00000003506
rosa_multiflora	Rmu_sc0000876.1_g000034 Rmu_sc0001714.1_g000009
rosa_roxburghii	Rroxscaffold_3G00253550
rosa_rugosa	Rorug07G0078900
rosa_samantha	Rh7AG208600 Rh7BG207400 Rh7CG220600 Rh7DG215400
rosa_wichuraiana	Rw7G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	431
AccI	GTMKAC	1 cut(s)	387
AccII	CGCG	8 cut(s)	177, 195, 379, 459, 467, 485, 521, 523
AcoI	YGGCCR	2 cut(s)	3, 546
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	517
AcyI	GRCGYC	2 cut(s)	365, 432
AfaI	GTAC	5 cut(s)	293, 326, 413, 518, 563
AgeI	ACCGGT	1 cut(s)	605
AgsI	TTSAA	1 cut(s)	679
AluBI	AGCT	3 cut(s)	39, 334, 628
AluI	AGCT	3 cut(s)	39, 334, 628
Alw21I	GWGCWC	1 cut(s)	465
Alw26I	GTCTC	2 cut(s)	392, 572
AoxI	GGCC	4 cut(s)	3, 235, 355, 546
ApeKI	GCWGC	2 cut(s)	203, 444
ApoI	RAATTY	1 cut(s)	98
AsiGI	ACCGGT	1 cut(s)	605
AspLEI	GCGC	8 cut(s)	179, 197, 381, 434, 469, 485, 523, 525
AspS9I	GGNCC	2 cut(s)	603, 698
AsuC2I	CCSGG	1 cut(s)	362
AsuHPI	GGTGA	5 cut(s)	34, 143, 289, 620, 628
AvaII	GGWCC	2 cut(s)	603, 698
BalI	TGGCCA	2 cut(s)	5, 548
BanI	GGYRCC	1 cut(s)	431
Bbv12I	GWGCWC	1 cut(s)	465
BbvI	GCAGC	2 cut(s)	215, 431
BccI	CCATC	3 cut(s)	29, 131, 425
BceAI	ACGGC	2 cut(s)	250, 624
BclI	TGATCA	1 cut(s)	645
BcnI	CCSGG	1 cut(s)	362
BcoDI	GTCTC	2 cut(s)	392, 572
BfaI	CTAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	435
BglI	GCCNNNNNGGC	1 cut(s)	740
BisI	GCNGC	9 cut(s)	198, 201, 204, 355, 430, 445, 448, 486, 498
BlpI	GCTNAGC	1 cut(s)	629
BlsI	GCNGC	9 cut(s)	199, 202, 205, 356, 431, 446, 449, 487, 499
BmcAI	AGTACT	1 cut(s)	413
Bme1390I	CCNGG	1 cut(s)	362
Bme18I	GGWCC	2 cut(s)	603, 698
BmgT120I	GGNCC	2 cut(s)	603, 698
BmiI	GGNNCC	2 cut(s)	340, 433
BmrFI	CCNGG	1 cut(s)	362
BmrI	ACTGGG	1 cut(s)	669
BmsI	GCATC	2 cut(s)	534, 682
BmuI	ACTGGG	1 cut(s)	669
Bpu1102I	GCTNAGC	1 cut(s)	629
BpuMI	CCSGG	1 cut(s)	362
BsaHI	GRCGYC	2 cut(s)	365, 432
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	1 cut(s)	232
BsaWI	WCCGGW	2 cut(s)	605, 700
BsaXI	ACNNNNNCTCC	2 cut(s)	103, 133
Bse118I	RCCGGY	5 cut(s)	469, 551, 605, 695, 713
Bse1I	ACTGG	1 cut(s)	664
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	4 cut(s)	123, 279, 697, 753
BseMII	CTCAG	1 cut(s)	620
BseNI	ACTGG	1 cut(s)	664
BsePI	GCGCGC	1 cut(s)	521
BseRI	GAGGAG	2 cut(s)	106, 608
BseXI	GCAGC	2 cut(s)	215, 431
BseYI	CCCAGC	1 cut(s)	743
BsgI	GTGCAG	1 cut(s)	619
Bsh1236I	CGCG	8 cut(s)	177, 195, 379, 459, 467, 485, 521, 523
Bsh1285I	CGRYCG	1 cut(s)	687
BshFI	GGCC	4 cut(s)	5, 237, 357, 548
BshNI	GGYRCC	1 cut(s)	431
BshTI	ACCGGT	1 cut(s)	605
BsiEI	CGRYCG	1 cut(s)	687
BsiHKAI	GWGCWC	1 cut(s)	465
BsiSI	CCGG	7 cut(s)	362, 470, 552, 606, 696, 701, 714
BsiWI	CGTACG	1 cut(s)	516
BslFI	GGGAC	2 cut(s)	290, 439
BsmAI	GTCTC	2 cut(s)	392, 572
BsmBI	CGTCTC	1 cut(s)	572
BsmFI	GGGAC	2 cut(s)	290, 439
BsnI	GGCC	4 cut(s)	5, 237, 357, 548
Bso31I	GGTCTC	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	465
Bsp143I	GATC	3 cut(s)	276, 645, 684
Bsp1720I	GCTNAGC	1 cut(s)	629
BspANI	GGCC	4 cut(s)	5, 237, 357, 548
BspCNI	CTCAG	1 cut(s)	621
BspFNI	CGCG	8 cut(s)	177, 195, 379, 459, 467, 485, 521, 523
BspLI	GGNNCC	2 cut(s)	340, 433
BspT107I	GGYRCC	1 cut(s)	431
BspTNI	GGTCTC	1 cut(s)	392
BsrFI	RCCGGY	5 cut(s)	469, 551, 605, 695, 713
BsrI	ACTGG	1 cut(s)	664
BssAI	RCCGGY	5 cut(s)	469, 551, 605, 695, 713
BssECI	CCNNGG	1 cut(s)	232
BssHII	GCGCGC	1 cut(s)	521
BssMI	GATC	3 cut(s)	276, 645, 684
BssNI	GRCGYC	2 cut(s)	365, 432
BstACI	GRCGYC	2 cut(s)	365, 432
BstC8I	GCNNGC	3 cut(s)	461, 465, 523
BstDEI	CTNAG	1 cut(s)	629
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	4 cut(s)	123, 279, 697, 753
BstFNI	CGCG	8 cut(s)	177, 195, 379, 459, 467, 485, 521, 523
BstH2I	RGCGCY	1 cut(s)	435
BstHHI	GCGC	8 cut(s)	179, 197, 381, 434, 469, 485, 523, 525
BstKTI	GATC	3 cut(s)	279, 648, 687
BstMAI	GTCTC	2 cut(s)	392, 572
BstMBI	GATC	3 cut(s)	276, 645, 684
BstMCI	CGRYCG	1 cut(s)	687
BstMWI	GCNNNNNNNGC	8 cut(s)	203, 456, 473, 482, 494, 506, 597, 740
BstSCI	CCNGG	1 cut(s)	360
BstUI	CGCG	8 cut(s)	177, 195, 379, 459, 467, 485, 521, 523
BstV1I	GCAGC	2 cut(s)	215, 431
BsuRI	GGCC	4 cut(s)	5, 237, 357, 548
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	4 cut(s)	123, 279, 697, 753
Cac8I	GCNNGC	3 cut(s)	461, 465, 523
CfoI	GCGC	8 cut(s)	179, 197, 381, 434, 469, 485, 523, 525
Cfr10I	RCCGGY	5 cut(s)	469, 551, 605, 695, 713
Cfr13I	GGNCC	2 cut(s)	603, 698
CpoI	CGGWCCG	1 cut(s)	698
CseI	GACGC	1 cut(s)	354
Csp6I	GTAC	5 cut(s)	292, 325, 412, 517, 562
CspAI	ACCGGT	1 cut(s)	605
CspI	CGGWCCG	1 cut(s)	698
CviQI	GTAC	5 cut(s)	292, 325, 412, 517, 562
DdeI	CTNAG	1 cut(s)	629
DinI	GGCGCC	1 cut(s)	433
DpnI	GATC	3 cut(s)	278, 647, 686
DpnII	GATC	3 cut(s)	276, 645, 684
EaeI	YGGCCR	2 cut(s)	3, 546
EciI	GGCGGA	1 cut(s)	524
Eco31I	GGTCTC	1 cut(s)	392
Eco47I	GGWCC	2 cut(s)	603, 698
Eco57I	CTGAAG	1 cut(s)	517
EgeI	GGCGCC	1 cut(s)	433
EheI	GGCGCC	1 cut(s)	433
Esp3I	CGTCTC	1 cut(s)	572
FaiI	YATR	2 cut(s)	672, 732
FaqI	GGGAC	2 cut(s)	290, 439
FauI	CCCGC	5 cut(s)	136, 292, 464, 481, 573
FbaI	TGATCA	1 cut(s)	645
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	9 cut(s)	198, 201, 204, 355, 430, 445, 448, 486, 498
FokI	GGATG	4 cut(s)	110, 266, 704, 760
Fsp4HI	GCNGC	9 cut(s)	198, 201, 204, 355, 430, 445, 448, 486, 498
FspBI	CTAG	1 cut(s)	36
GlaI	GCGC	8 cut(s)	178, 196, 380, 433, 468, 484, 522, 524
GluI	GCNGC	9 cut(s)	198, 201, 204, 355, 430, 445, 448, 486, 498
GsaI	CCCAGC	1 cut(s)	747
HaeII	RGCGCY	1 cut(s)	435
HaeIII	GGCC	4 cut(s)	5, 237, 357, 548
HapII	CCGG	7 cut(s)	362, 470, 552, 606, 696, 701, 714
HgaI	GACGC	1 cut(s)	354
HhaI	GCGC	8 cut(s)	179, 197, 381, 434, 469, 485, 523, 525
Hin1I	GRCGYC	2 cut(s)	365, 432
Hin6I	GCGC	8 cut(s)	177, 195, 379, 432, 467, 483, 521, 523
HinP1I	GCGC	8 cut(s)	177, 195, 379, 432, 467, 483, 521, 523
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HinfI	GANTC	3 cut(s)	512, 572, 751
HpaII	CCGG	7 cut(s)	362, 470, 552, 606, 696, 701, 714
HphI	GGTGA	5 cut(s)	34, 143, 289, 620, 628
Hpy166II	GTNNAC	2 cut(s)	388, 562
Hpy188I	TCNGA	4 cut(s)	322, 577, 645, 710
Hpy188III	TCNNGA	1 cut(s)	535
Hpy8I	GTNNAC	2 cut(s)	388, 562
Hpy99I	CGWCG	3 cut(s)	251, 254, 389
HpyAV	CCTTC	3 cut(s)	158, 193, 238
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	1 cut(s)	600
HpyF10VI	GCNNNNNNNGC	8 cut(s)	203, 456, 473, 482, 494, 506, 597, 740
HpyF3I	CTNAG	1 cut(s)	629
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	2 cut(s)	365, 432
HspAI	GCGC	8 cut(s)	177, 195, 379, 432, 467, 483, 521, 523
KasI	GGCGCC	1 cut(s)	431
Ksp22I	TGATCA	1 cut(s)	645
Kzo9I	GATC	3 cut(s)	276, 645, 684
LmnI	GCTCC	1 cut(s)	344
Lsp1109I	GCAGC	2 cut(s)	215, 431
LweI	GCATC	2 cut(s)	534, 682
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	1 cut(s)	246
MalI	GATC	3 cut(s)	278, 647, 686
MboI	GATC	3 cut(s)	276, 645, 684
MboII	GAAGA	2 cut(s)	520, 523
MhlI	GDGCHC	1 cut(s)	465
MlsI	TGGCCA	2 cut(s)	5, 548
MluCI	AATT	1 cut(s)	98
MluNI	TGGCCA	2 cut(s)	5, 548
Mly113I	GGCGCC	1 cut(s)	432
MlyI	GAGTC	1 cut(s)	521
MmeI	TCCRAC	1 cut(s)	336
Mox20I	TGGCCA	2 cut(s)	5, 548
MscI	TGGCCA	2 cut(s)	5, 548
Msp20I	TGGCCA	2 cut(s)	5, 548
MspA1I	CMGCKG	1 cut(s)	568
MspI	CCGG	7 cut(s)	362, 470, 552, 606, 696, 701, 714
MspR9I	CCNGG	1 cut(s)	362
MvnI	CGCG	8 cut(s)	177, 195, 379, 459, 467, 485, 521, 523
MwoI	GCNNNNNNNGC	8 cut(s)	203, 456, 473, 482, 494, 506, 597, 740
NarI	GGCGCC	1 cut(s)	432
NciI	CCSGG	1 cut(s)	362
NdeII	GATC	3 cut(s)	276, 645, 684
NlaIV	GGNNCC	2 cut(s)	340, 433
NmeAIII	GCCGAG	3 cut(s)	313, 315, 459
PauI	GCGCGC	1 cut(s)	521
PcsI	WCGNNNNNNNCGW	2 cut(s)	252, 393
PfeI	GAWTC	2 cut(s)	572, 751
Pfl23II	CGTACG	1 cut(s)	516
PflFI	GACNNNGTC	1 cut(s)	403
PinAI	ACCGGT	1 cut(s)	605
PkrI	GCNGC	9 cut(s)	199, 202, 205, 356, 431, 446, 449, 487, 499
Ple19I	CGATCG	1 cut(s)	687
PleI	GAGTC	1 cut(s)	520
PluTI	GGCGCC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	520
PspFI	CCCAGC	1 cut(s)	743
PspLI	CGTACG	1 cut(s)	516
PspN4I	GGNNCC	2 cut(s)	340, 433
PspPI	GGNCC	2 cut(s)	603, 698
PsyI	GACNNNGTC	1 cut(s)	403
PteI	GCGCGC	1 cut(s)	521
PvuI	CGATCG	1 cut(s)	687
RsaI	GTAC	5 cut(s)	293, 326, 413, 518, 563
RsaNI	GTAC	5 cut(s)	292, 325, 412, 517, 562
Rsr2I	CGGWCCG	1 cut(s)	698
RsrII	CGGWCCG	1 cut(s)	698
SalI	GTCGAC	1 cut(s)	386
SatI	GCNGC	9 cut(s)	198, 201, 204, 355, 430, 445, 448, 486, 498
Sau3AI	GATC	3 cut(s)	276, 645, 684
Sau96I	GGNCC	2 cut(s)	603, 698
ScaI	AGTACT	1 cut(s)	413
SchI	GAGTC	1 cut(s)	521
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	465
SfaNI	GCATC	2 cut(s)	534, 682
SfoI	GGCGCC	1 cut(s)	433
SgrAI	CRCCGGYG	2 cut(s)	469, 551
SinI	GGWCC	2 cut(s)	603, 698
Sse9I	AATT	1 cut(s)	98
SspDI	GGCGCC	1 cut(s)	431
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	1 cut(s)	360
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	2 cut(s)	264, 387
TasI	AATT	1 cut(s)	98
TatI	WGTACW	1 cut(s)	411
TauI	GCSGC	7 cut(s)	200, 203, 357, 432, 450, 488, 500
TfiI	GAWTC	2 cut(s)	572, 751
TseI	GCWGC	2 cut(s)	203, 444
Tth111I	GACNNNGTC	1 cut(s)	403
VpaK11BI	GGWCC	2 cut(s)	603, 698
XapI	RAATTY	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	387
XspI	CTAG	1 cut(s)	36
ZrmI	AGTACT	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.