Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0012022

Physical Location & Seq

Genomic Coordinates Reverse (-)

5367815 .. 5368582

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g05570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCCGGCGCCGCCTCTCTCGCCCTCTCTCCAAACCCTAGCTTCACCACCACCACCTCCTCCCACAAATCCTCTCTCTCTACCCCCAACTTTCTCAAATTCCCTACCCTATCCCCCACCCCCATCAAACCCCTAACCCATGCCCCACAAACCCAAACCCAAACCCCAATCTCACGCGCCACCTTCTCCACACGCGCAGCCGCCTCCACGACTCCATCCACCACATTCCACGGTCTCTGCTACGTCGTGGGCGACAACATCGACACCGACCAGATCATCCCCGCCGAGTACCTAACCCTGGTCCCCTCCAACCCCTCCGAGTACGAGAAGCTCGGGTCCTACGCGCTCTGCGGCCTCCCCGCCTCATACTCCACGCGCTTCGTGGACCCGGGAGAGACCAAGTCCAAGTACTCTATCGTAATCGGGGGCGCCAACTTCGGGTGCGGGTCGTCGCGGGAGCACGCGCCGGTGGCGCTGGGAGCGGCGGGAGTGGCGGCGGTGGTGGCGGAGTCGTACGCTCGGATATTTTTCGGGAGCTCGGTGGCGGCGGGGGAGGTGTACCCGCTGGAATCGGAGGGTAGGGTTTGCGAGGAGTGCAAGACGGGGGATGTGGTGAGCATTGAGTTGAGCGAGAGCCGTCTGATCAATCACACGACGGGGAAGGAGTACACGTTGAAGCCGATTGGGGACGCGGGCCCTGTTATTAGAGCTGGATCGATCTTTGCTTATGCTAGGGAGGCTGGGATGATTCCTACTTTGAGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003861 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0016829 GO:0016835 GO:0016836 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0048229 GO:0048856 GO:0050896 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase_C

Protein Analysis

256

Amino Acids

26.63

Weight (kDa)

5.96

Isoelectric Point (pI)

35.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase_C	PF00694	138 - 183	2.7e-15	Aconitase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43090 AT2G43090
fragaria_vesca	FvH4_5g19250 FvH4_5g19250
malus_domestica	MD04G1062100.v1.1 MD06G1055800.v1.1
prunus_persica	Prupe.5G066300_v2.0.a1
pyrus_communis	pycom04g05570 pycom06g04670
rosa_laevigata	RLG00000003506
rosa_multiflora	Rmu_sc0000876.1_g000034 Rmu_sc0001714.1_g000009
rosa_roxburghii	Rroxscaffold_3G00253550
rosa_rugosa	Rorug07G0078900
rosa_samantha	Rh7AG208600 Rh7BG207400 Rh7CG220600 Rh7DG215400
rosa_wichuraiana	Rw7G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	8, 428
AccBSI	CCGCTC	1 cut(s)	482
AccII	CGCG	7 cut(s)	177, 195, 344, 376, 454, 464, 692
AclWI	GGATC	1 cut(s)	721
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	98
AcyI	GRCGYC	2 cut(s)	9, 429
AfaI	GTAC	6 cut(s)	290, 323, 410, 515, 560, 668
AfiI	CCNNNNNNNGG	2 cut(s)	298, 438
AflIII	ACRYGT	1 cut(s)	669
AgsI	TTSAA	1 cut(s)	676
AjnI	CCWGG	1 cut(s)	297
AluBI	AGCT	4 cut(s)	42, 331, 537, 710
AluI	AGCT	4 cut(s)	42, 331, 537, 710
Alw21I	GWGCWC	2 cut(s)	462, 539
Alw26I	GTCTC	2 cut(s)	239, 389
AlwI	GGATC	1 cut(s)	721
Ama87I	CYCGRG	2 cut(s)	332, 388
AoxI	GGCC	3 cut(s)	3, 352, 694
ApaI	GGGCCC	1 cut(s)	698
ApeKI	GCWGC	1 cut(s)	197
ApoI	RAATTY	1 cut(s)	98
AspLEI	GCGC	8 cut(s)	11, 179, 197, 346, 378, 431, 466, 475
AspS9I	GGNCC	5 cut(s)	301, 336, 385, 694, 695
AsuC2I	CCSGG	2 cut(s)	389, 390
AsuHPI	GGTGA	2 cut(s)	37, 625
AvaI	CYCGRG	2 cut(s)	332, 388
AvaII	GGWCC	3 cut(s)	301, 336, 385
BaeGI	GKGCMC	1 cut(s)	698
BanI	GGYRCC	2 cut(s)	8, 428
BanII	GRGCYC	2 cut(s)	539, 698
Bbv12I	GWGCWC	2 cut(s)	462, 539
BbvI	GCAGC	1 cut(s)	209
BccI	CCATC	2 cut(s)	131, 223
BceAI	ACGGC	1 cut(s)	621
BciT130I	CCWGG	1 cut(s)	299
BclI	TGATCA	1 cut(s)	642
BcnI	CCSGG	2 cut(s)	389, 390
BcoDI	GTCTC	2 cut(s)	239, 389
BfaI	CTAG	2 cut(s)	39, 732
BfoI	RGCGCY	3 cut(s)	12, 432, 476
BisI	GCNGC	7 cut(s)	12, 198, 201, 352, 483, 495, 546
BlsI	GCNGC	7 cut(s)	13, 199, 202, 353, 484, 496, 547
BmcAI	AGTACT	1 cut(s)	410
Bme1390I	CCNGG	3 cut(s)	299, 389, 390
Bme18I	GGWCC	3 cut(s)	301, 336, 385
BmeT110I	CYCGRG	2 cut(s)	332, 388
BmgT120I	GGNCC	5 cut(s)	301, 336, 385, 694, 695
BmiI	GGNNCC	6 cut(s)	10, 303, 337, 387, 430, 696
BmrFI	CCNGG	3 cut(s)	299, 389, 390
BpuMI	CCSGG	2 cut(s)	389, 390
Bsa29I	ATCGAT	1 cut(s)	716
BsaHI	GRCGYC	2 cut(s)	9, 429
BsaI	GGTCTC	2 cut(s)	239, 389
BsaJI	CCNNGG	3 cut(s)	229, 297, 388
BsaXI	ACNNNNNCTCC	2 cut(s)	656, 686
Bsc4I	CCNNNNNNNGG	2 cut(s)	298, 438
Bse118I	RCCGGY	2 cut(s)	5, 466
BseBI	CCWGG	1 cut(s)	299
BseCI	ATCGAT	1 cut(s)	716
BseDI	CCNNGG	3 cut(s)	229, 297, 388
BseGI	GGATG	4 cut(s)	215, 276, 613, 750
BseLI	CCNNNNNNNGG	2 cut(s)	298, 438
BseRI	GAGGAG	2 cut(s)	49, 605
BseSI	GKGCMC	1 cut(s)	698
BseXI	GCAGC	1 cut(s)	209
BseYI	CCCAGC	2 cut(s)	475, 740
Bsh1236I	CGCG	7 cut(s)	177, 195, 344, 376, 454, 464, 692
BshFI	GGCC	3 cut(s)	5, 354, 696
BshNI	GGYRCC	2 cut(s)	8, 428
BshVI	ATCGAT	1 cut(s)	716
BsiHKAI	GWGCWC	2 cut(s)	462, 539
BsiHKCI	CYCGRG	2 cut(s)	332, 388
BsiSI	CCGG	3 cut(s)	6, 389, 467
BsiWI	CGTACG	1 cut(s)	513
BslFI	GGGAC	2 cut(s)	287, 701
BslI	CCNNNNNNNGG	2 cut(s)	298, 438
BsmAI	GTCTC	2 cut(s)	239, 389
BsmFI	GGGAC	2 cut(s)	287, 701
BsnI	GGCC	3 cut(s)	5, 354, 696
Bso31I	GGTCTC	2 cut(s)	239, 389
BsoBI	CYCGRG	2 cut(s)	332, 388
Bsp120I	GGGCCC	1 cut(s)	694
Bsp1286I	GDGCHC	3 cut(s)	462, 539, 698
Bsp143I	GATC	4 cut(s)	273, 642, 713, 717
BspANI	GGCC	3 cut(s)	5, 354, 696
BspDI	ATCGAT	1 cut(s)	716
BspFNI	CGCG	7 cut(s)	177, 195, 344, 376, 454, 464, 692
BspLI	GGNNCC	6 cut(s)	10, 303, 337, 387, 430, 696
BspPI	GGATC	1 cut(s)	721
BspT107I	GGYRCC	2 cut(s)	8, 428
BspTNI	GGTCTC	2 cut(s)	239, 389
BsrBI	CCGCTC	1 cut(s)	482
BsrFI	RCCGGY	2 cut(s)	5, 466
BssAI	RCCGGY	2 cut(s)	5, 466
BssECI	CCNNGG	3 cut(s)	229, 297, 388
BssMI	GATC	4 cut(s)	273, 642, 713, 717
BssNI	GRCGYC	2 cut(s)	9, 429
Bst2UI	CCWGG	1 cut(s)	299
Bst4CI	ACNGT	1 cut(s)	233
BstACI	GRCGYC	2 cut(s)	9, 429
BstC8I	GCNNGC	3 cut(s)	7, 462, 694
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	4 cut(s)	215, 276, 613, 750
BstFNI	CGCG	7 cut(s)	177, 195, 344, 376, 454, 464, 692
BstH2I	RGCGCY	3 cut(s)	12, 432, 476
BstHHI	GCGC	8 cut(s)	11, 179, 197, 346, 378, 431, 466, 475
BstKTI	GATC	4 cut(s)	276, 645, 716, 720
BstMAI	GTCTC	2 cut(s)	239, 389
BstMBI	GATC	4 cut(s)	273, 642, 713, 717
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 20, 470, 472, 479, 491, 503, 594, 737
BstNI	CCWGG	1 cut(s)	299
BstSCI	CCNGG	3 cut(s)	297, 387, 388
BstSLI	GKGCMC	1 cut(s)	698
BstUI	CGCG	7 cut(s)	177, 195, 344, 376, 454, 464, 692
BstV1I	GCAGC	1 cut(s)	209
Bsu15I	ATCGAT	1 cut(s)	716
BsuRI	GGCC	3 cut(s)	5, 354, 696
BsuTUI	ATCGAT	1 cut(s)	716
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	4 cut(s)	215, 276, 613, 750
Cac8I	GCNNGC	3 cut(s)	7, 462, 694
CfoI	GCGC	8 cut(s)	11, 179, 197, 346, 378, 431, 466, 475
Cfr10I	RCCGGY	2 cut(s)	5, 466
Cfr13I	GGNCC	5 cut(s)	301, 336, 385, 694, 695
Cfr9I	CCCGGG	1 cut(s)	388
ClaI	ATCGAT	1 cut(s)	716
CseI	GACGC	1 cut(s)	698
Csp6I	GTAC	6 cut(s)	289, 322, 409, 514, 559, 667
CviAII	CATG	1 cut(s)	140
CviQI	GTAC	6 cut(s)	289, 322, 409, 514, 559, 667
DinI	GGCGCC	2 cut(s)	10, 430
DpnI	GATC	4 cut(s)	275, 644, 715, 719
DpnII	GATC	4 cut(s)	273, 642, 713, 717
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	521
Ecl136II	GAGCTC	1 cut(s)	537
Eco24I	GRGCYC	2 cut(s)	539, 698
Eco31I	GGTCTC	2 cut(s)	239, 389
Eco47I	GGWCC	3 cut(s)	301, 336, 385
Eco53kI	GAGCTC	1 cut(s)	537
Eco88I	CYCGRG	2 cut(s)	332, 388
EcoICRI	GAGCTC	1 cut(s)	537
EcoO109I	RGGNCCY	2 cut(s)	336, 695
EcoRII	CCWGG	1 cut(s)	297
EcoT38I	GRGCYC	2 cut(s)	539, 698
EgeI	GGCGCC	2 cut(s)	10, 430
EheI	GGCGCC	2 cut(s)	10, 430
FaeI	CATG	1 cut(s)	143
FaiI	YATR	3 cut(s)	141, 367, 729
FaqI	GGGAC	2 cut(s)	287, 701
FatI	CATG	1 cut(s)	139
FauI	CCCGC	8 cut(s)	289, 367, 437, 447, 478, 541, 570, 685
FbaI	TGATCA	1 cut(s)	642
Fnu4HI	GCNGC	7 cut(s)	12, 198, 201, 352, 483, 495, 546
FokI	GGATG	4 cut(s)	202, 263, 620, 757
FriOI	GRGCYC	2 cut(s)	539, 698
Fsp4HI	GCNGC	7 cut(s)	12, 198, 201, 352, 483, 495, 546
FspBI	CTAG	2 cut(s)	39, 732
GlaI	GCGC	8 cut(s)	10, 178, 196, 345, 377, 430, 465, 474
GluI	GCNGC	7 cut(s)	12, 198, 201, 352, 483, 495, 546
GsaI	CCCAGC	2 cut(s)	479, 744
HaeII	RGCGCY	3 cut(s)	12, 432, 476
HaeIII	GGCC	3 cut(s)	5, 354, 696
HapII	CCGG	3 cut(s)	6, 389, 467
HgaI	GACGC	1 cut(s)	698
HhaI	GCGC	8 cut(s)	11, 179, 197, 346, 378, 431, 466, 475
Hin1I	GRCGYC	2 cut(s)	9, 429
Hin1II	CATG	1 cut(s)	143
Hin6I	GCGC	8 cut(s)	9, 177, 195, 344, 376, 429, 464, 473
HinP1I	GCGC	8 cut(s)	9, 177, 195, 344, 376, 429, 464, 473
HinfI	GANTC	4 cut(s)	211, 509, 569, 748
HpaII	CCGG	3 cut(s)	6, 389, 467
HphI	GGTGA	2 cut(s)	37, 625
Hpy166II	GTNNAC	3 cut(s)	385, 559, 669
Hpy188I	TCNGA	4 cut(s)	319, 522, 574, 642
Hpy188III	TCNNGA	1 cut(s)	532
Hpy8I	GTNNAC	3 cut(s)	385, 559, 669
Hpy99I	CGWCG	3 cut(s)	248, 454, 658
HpyAV	CCTTC	2 cut(s)	193, 655
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4IV	ACGT	2 cut(s)	243, 671
HpyCH4V	TGCA	1 cut(s)	597
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 20, 470, 472, 479, 491, 503, 594, 737
HpySE526I	ACGT	2 cut(s)	243, 671
Hsp92I	GRCGYC	2 cut(s)	9, 429
Hsp92II	CATG	1 cut(s)	143
HspAI	GCGC	8 cut(s)	9, 177, 195, 344, 376, 429, 464, 473
KasI	GGCGCC	2 cut(s)	8, 428
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	642
Kzo9I	GATC	4 cut(s)	273, 642, 713, 717
LmnI	GCTCC	3 cut(s)	457, 479, 534
Lsp1109I	GCAGC	1 cut(s)	209
MaeI	CTAG	2 cut(s)	39, 732
MaeII	ACGT	2 cut(s)	243, 671
MalI	GATC	4 cut(s)	275, 644, 715, 719
MbiI	CCGCTC	1 cut(s)	482
MboI	GATC	4 cut(s)	273, 642, 713, 717
MhlI	GDGCHC	3 cut(s)	462, 539, 698
MluCI	AATT	1 cut(s)	98
Mly113I	GGCGCC	2 cut(s)	9, 429
MlyI	GAGTC	2 cut(s)	205, 518
MmeI	TCCRAC	1 cut(s)	333
MroNI	GCCGGC	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	565
MspI	CCGG	3 cut(s)	6, 389, 467
MspR9I	CCNGG	3 cut(s)	299, 389, 390
MvaI	CCWGG	1 cut(s)	299
MvnI	CGCG	7 cut(s)	177, 195, 344, 376, 454, 464, 692
MwoI	GCNNNNNNNGC	9 cut(s)	11, 20, 470, 472, 479, 491, 503, 594, 737
NaeI	GCCGGC	1 cut(s)	7
NarI	GGCGCC	2 cut(s)	9, 429
NciI	CCSGG	2 cut(s)	389, 390
NdeII	GATC	4 cut(s)	273, 642, 713, 717
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	1 cut(s)	143
NlaIV	GGNNCC	6 cut(s)	10, 303, 337, 387, 430, 696
NmeAIII	GCCGAG	1 cut(s)	310
PcsI	WCGNNNNNNNCGW	2 cut(s)	249, 677
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	2 cut(s)	569, 748
Pfl23II	CGTACG	1 cut(s)	513
PflFI	GACNNNGTC	1 cut(s)	400
PkrI	GCNGC	7 cut(s)	13, 199, 202, 353, 484, 496, 547
PleI	GAGTC	2 cut(s)	205, 517
PluTI	GGCGCC	2 cut(s)	12, 432
PpsI	GAGTC	2 cut(s)	205, 517
PpuMI	RGGWCCY	1 cut(s)	336
Psp124BI	GAGCTC	1 cut(s)	539
Psp5II	RGGWCCY	1 cut(s)	336
Psp6I	CCWGG	1 cut(s)	297
PspFI	CCCAGC	2 cut(s)	475, 740
PspGI	CCWGG	1 cut(s)	297
PspLI	CGTACG	1 cut(s)	513
PspN4I	GGNNCC	6 cut(s)	10, 303, 337, 387, 430, 696
PspOMI	GGGCCC	1 cut(s)	694
PspPI	GGNCC	5 cut(s)	301, 336, 385, 694, 695
PspPPI	RGGWCCY	1 cut(s)	336
PsyI	GACNNNGTC	1 cut(s)	400
RsaI	GTAC	6 cut(s)	290, 323, 410, 515, 560, 668
RsaNI	GTAC	6 cut(s)	289, 322, 409, 514, 559, 667
SacI	GAGCTC	1 cut(s)	539
SatI	GCNGC	7 cut(s)	12, 198, 201, 352, 483, 495, 546
Sau3AI	GATC	4 cut(s)	273, 642, 713, 717
Sau96I	GGNCC	5 cut(s)	301, 336, 385, 694, 695
ScaI	AGTACT	1 cut(s)	410
SchI	GAGTC	2 cut(s)	205, 518
ScrFI	CCNGG	3 cut(s)	299, 389, 390
SduI	GDGCHC	3 cut(s)	462, 539, 698
SfoI	GGCGCC	2 cut(s)	10, 430
SgrAI	CRCCGGYG	1 cut(s)	466
SinI	GGWCC	3 cut(s)	301, 336, 385
SmaI	CCCGGG	1 cut(s)	390
Sse9I	AATT	1 cut(s)	98
SspDI	GGCGCC	2 cut(s)	8, 428
SspMI	CTAG	2 cut(s)	39, 732
SstI	GAGCTC	1 cut(s)	539
StyD4I	CCNGG	3 cut(s)	297, 387, 388
TaaI	ACNGT	1 cut(s)	233
TaiI	ACGT	2 cut(s)	246, 674
TaqI	TCGA	2 cut(s)	261, 716
TasI	AATT	1 cut(s)	98
TatI	WGTACW	2 cut(s)	408, 666
TauI	GCSGC	6 cut(s)	14, 203, 354, 485, 497, 548
TfiI	GAWTC	2 cut(s)	569, 748
TseI	GCWGC	1 cut(s)	197
TspMI	CCCGGG	1 cut(s)	388
Tth111I	GACNNNGTC	1 cut(s)	400
VpaK11BI	GGWCC	3 cut(s)	301, 336, 385
XapI	RAATTY	1 cut(s)	98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XmaI	CCCGGG	1 cut(s)	388
XspI	CTAG	2 cut(s)	39, 732
ZrmI	AGTACT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.