Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0012022

Physical Location & Seq

Genomic Coordinates Forward (+)

19072593 .. 19077292

Gene Structure 4700 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG208600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCCGCTACCTCCCTCTCTCCAAACCCTAGCTTCACCACCACCACCTCTCACAAACCCTCTCCCTCTCTCTCAACCCCAACCCACCTCAAATTCTCAACCACCACCTCCTCTCCCATCCCCGCCAAATCCCTATCCACCCTTCACCTCTCCCAAACCCCAACCCCACGCGCCACCTTCTCCACACGCGCCTCCGCCGCAGCCTCCACCACTCCCTCCACCACCTTCCACGGCCTCTGCTACGTCGTCGGCGACAACATCGACACCGACCAGATCATCCCCGCCGAGTACCTCACCCTCGTCCCCTCCAACCCCTCCGAGTACGAGAAGCTCGGCTCCTACGCCCTCTGCGGCCTCCCGGCGTCCTACTCCACGCGATTCGTCGACCCCAACGAGACCAAGTCCAAGTACTCCATCGTCATCGGCGGCGCCAACTTCGGCTGCGGCTCGTCCCGCGAGCACGCGCCGGTGGCTCTCGGCGCGGCCGGAGTCGCGGCGGTGGTGGCGGAGTCGTACGCGCGCATCTTCTTCAGGAACTCGGTGGCCACCGGCGAGGTGTACCCGCTGGAATCGGAGACGAGGATTTGCGAGGAGTGCAGGACCGGTGATGTGGTGAGCATTGAGCTGAGCGAGAGCCGTCTGATCAATCACACGACTGGGAAAGAGTATGTGTTGAAGCCGATTGGGGATGCCGGTCCGGTTATCAGTGCTGGTGGCATATTTGCTTATGCTAGAGAGGCTGGGATGATCCCAACTTTGTCTGATTCATGGGAAGAGAGGATTATTGGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003861 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0016829 GO:0016835 GO:0016836 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0048229 GO:0048856 GO:0050896 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase_C

Protein Analysis

264

Amino Acids

27.84

Weight (kDa)

5.69

Isoelectric Point (pI)

39.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase_C	PF00694	136 - 184	1.5e-17	Aconitase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43090 AT2G43090
fragaria_vesca	FvH4_5g19250 FvH4_5g19250
malus_domestica	MD04G1062100.v1.1 MD06G1055800.v1.1
prunus_persica	Prupe.5G066300_v2.0.a1
pyrus_communis	pycom04g05570 pycom06g04670
rosa_laevigata	RLG00000003506
rosa_multiflora	Rmu_sc0000876.1_g000034 Rmu_sc0001714.1_g000009
rosa_roxburghii	Rroxscaffold_3G00253550
rosa_rugosa	Rorug07G0078900
rosa_samantha	Rh7AG208600 Rh7BG207400 Rh7CG220600 Rh7DG215400
rosa_wichuraiana	Rw7G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	428
AccI	GTMKAC	1 cut(s)	384
AccII	CGCG	9 cut(s)	171, 189, 376, 456, 464, 482, 494, 518, 520
AclWI	GGATC	1 cut(s)	742
AcoI	YGGCCR	3 cut(s)	3, 483, 543
AcsI	RAATTY	1 cut(s)	92
AcuI	CTGAAG	1 cut(s)	514
AcyI	GRCGYC	2 cut(s)	362, 429
AfaI	GTAC	5 cut(s)	290, 323, 410, 515, 560
AgeI	ACCGGT	1 cut(s)	602
AgsI	TTSAA	1 cut(s)	676
AluBI	AGCT	3 cut(s)	33, 331, 625
AluI	AGCT	3 cut(s)	33, 331, 625
Alw21I	GWGCWC	1 cut(s)	462
Alw26I	GTCTC	2 cut(s)	389, 569
AlwI	GGATC	1 cut(s)	742
AoxI	GGCC	5 cut(s)	3, 232, 352, 483, 543
ApeKI	GCWGC	2 cut(s)	200, 441
ApoI	RAATTY	1 cut(s)	92
AsiGI	ACCGGT	1 cut(s)	602
AspLEI	GCGC	7 cut(s)	173, 191, 431, 466, 482, 520, 522
AspS9I	GGNCC	2 cut(s)	600, 695
AsuC2I	CCSGG	1 cut(s)	359
AsuHPI	GGTGA	5 cut(s)	28, 137, 286, 617, 625
AvaII	GGWCC	2 cut(s)	600, 695
BalI	TGGCCA	1 cut(s)	545
BanI	GGYRCC	1 cut(s)	428
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	2 cut(s)	212, 428
BccI	CCATC	2 cut(s)	125, 422
BceAI	ACGGC	2 cut(s)	247, 621
BclI	TGATCA	1 cut(s)	642
BcnI	CCSGG	1 cut(s)	359
BcoDI	GTCTC	2 cut(s)	389, 569
BfaI	CTAG	2 cut(s)	30, 732
BfoI	RGCGCY	1 cut(s)	432
BisI	GCNGC	9 cut(s)	6, 198, 201, 352, 427, 442, 445, 483, 495
BlpI	GCTNAGC	1 cut(s)	626
BlsI	GCNGC	9 cut(s)	7, 199, 202, 353, 428, 443, 446, 484, 496
BmcAI	AGTACT	1 cut(s)	410
Bme1390I	CCNGG	1 cut(s)	359
Bme18I	GGWCC	2 cut(s)	600, 695
BmgT120I	GGNCC	2 cut(s)	600, 695
BmiI	GGNNCC	2 cut(s)	337, 430
BmrFI	CCNGG	1 cut(s)	359
BmrI	ACTGGG	1 cut(s)	666
BmsI	GCATC	2 cut(s)	531, 679
BmuI	ACTGGG	1 cut(s)	666
Bpu1102I	GCTNAGC	1 cut(s)	626
BpuMI	CCSGG	1 cut(s)	359
BsaHI	GRCGYC	2 cut(s)	362, 429
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	229
BsaWI	WCCGGW	2 cut(s)	602, 697
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bse118I	RCCGGY	4 cut(s)	466, 548, 602, 692
Bse1I	ACTGG	1 cut(s)	661
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	4 cut(s)	117, 276, 694, 750
BseMII	CTCAG	1 cut(s)	617
BseNI	ACTGG	1 cut(s)	661
BsePI	GCGCGC	1 cut(s)	518
BseRI	GAGGAG	2 cut(s)	100, 605
BseX3I	CGGCCG	1 cut(s)	483
BseXI	GCAGC	2 cut(s)	212, 428
BseYI	CCCAGC	1 cut(s)	740
BsgI	GTGCAG	1 cut(s)	616
Bsh1236I	CGCG	9 cut(s)	171, 189, 376, 456, 464, 482, 494, 518, 520
Bsh1285I	CGRYCG	1 cut(s)	486
BshFI	GGCC	5 cut(s)	5, 234, 354, 485, 545
BshNI	GGYRCC	1 cut(s)	428
BshTI	ACCGGT	1 cut(s)	602
BsiEI	CGRYCG	1 cut(s)	486
BsiHKAI	GWGCWC	1 cut(s)	462
BsiSI	CCGG	7 cut(s)	359, 467, 486, 549, 603, 693, 698
BsiWI	CGTACG	1 cut(s)	513
BslFI	GGGAC	2 cut(s)	287, 436
BsmAI	GTCTC	2 cut(s)	389, 569
BsmBI	CGTCTC	1 cut(s)	569
BsmFI	GGGAC	2 cut(s)	287, 436
BsnI	GGCC	5 cut(s)	5, 234, 354, 485, 545
Bso31I	GGTCTC	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	4 cut(s)	273, 642, 747, 788
Bsp1720I	GCTNAGC	1 cut(s)	626
BspANI	GGCC	5 cut(s)	5, 234, 354, 485, 545
BspCNI	CTCAG	1 cut(s)	618
BspFNI	CGCG	9 cut(s)	171, 189, 376, 456, 464, 482, 494, 518, 520
BspLI	GGNNCC	2 cut(s)	337, 430
BspPI	GGATC	1 cut(s)	742
BspT107I	GGYRCC	1 cut(s)	428
BspTNI	GGTCTC	1 cut(s)	389
BsrFI	RCCGGY	4 cut(s)	466, 548, 602, 692
BsrI	ACTGG	1 cut(s)	661
BssAI	RCCGGY	4 cut(s)	466, 548, 602, 692
BssECI	CCNNGG	1 cut(s)	229
BssHII	GCGCGC	1 cut(s)	518
BssMI	GATC	4 cut(s)	273, 642, 747, 788
BssNI	GRCGYC	2 cut(s)	362, 429
Bst6I	CTCTTC	1 cut(s)	768
BstACI	GRCGYC	2 cut(s)	362, 429
BstC8I	GCNNGC	3 cut(s)	458, 462, 520
BstDEI	CTNAG	1 cut(s)	626
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	4 cut(s)	117, 276, 694, 750
BstFNI	CGCG	9 cut(s)	171, 189, 376, 456, 464, 482, 494, 518, 520
BstH2I	RGCGCY	1 cut(s)	432
BstHHI	GCGC	7 cut(s)	173, 191, 431, 466, 482, 520, 522
BstKTI	GATC	4 cut(s)	276, 645, 750, 791
BstMAI	GTCTC	2 cut(s)	389, 569
BstMBI	GATC	4 cut(s)	273, 642, 747, 788
BstMCI	CGRYCG	1 cut(s)	486
BstMWI	GCNNNNNNNGC	8 cut(s)	197, 453, 470, 479, 491, 503, 594, 737
BstSCI	CCNGG	1 cut(s)	357
BstUI	CGCG	9 cut(s)	171, 189, 376, 456, 464, 482, 494, 518, 520
BstV1I	GCAGC	2 cut(s)	212, 428
BstX2I	RGATCY	1 cut(s)	788
BstYI	RGATCY	1 cut(s)	788
BstZI	CGGCCG	1 cut(s)	483
BsuRI	GGCC	5 cut(s)	5, 234, 354, 485, 545
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	4 cut(s)	117, 276, 694, 750
BtsIMutI	CAGTG	1 cut(s)	712
Cac8I	GCNNGC	3 cut(s)	458, 462, 520
CfoI	GCGC	7 cut(s)	173, 191, 431, 466, 482, 520, 522
Cfr10I	RCCGGY	4 cut(s)	466, 548, 602, 692
Cfr13I	GGNCC	2 cut(s)	600, 695
CpoI	CGGWCCG	1 cut(s)	695
CseI	GACGC	1 cut(s)	351
Csp6I	GTAC	5 cut(s)	289, 322, 409, 514, 559
CspAI	ACCGGT	1 cut(s)	602
CspI	CGGWCCG	1 cut(s)	695
CviAII	CATG	1 cut(s)	768
CviQI	GTAC	5 cut(s)	289, 322, 409, 514, 559
DdeI	CTNAG	1 cut(s)	626
DinI	GGCGCC	1 cut(s)	430
DpnI	GATC	4 cut(s)	275, 644, 749, 790
DpnII	GATC	4 cut(s)	273, 642, 747, 788
EaeI	YGGCCR	3 cut(s)	3, 483, 543
EagI	CGGCCG	1 cut(s)	483
Eam1104I	CTCTTC	1 cut(s)	768
EarI	CTCTTC	1 cut(s)	768
EciI	GGCGGA	2 cut(s)	184, 521
EclXI	CGGCCG	1 cut(s)	483
Eco31I	GGTCTC	1 cut(s)	389
Eco47I	GGWCC	2 cut(s)	600, 695
Eco52I	CGGCCG	1 cut(s)	483
Eco57I	CTGAAG	1 cut(s)	514
EgeI	GGCGCC	1 cut(s)	430
EheI	GGCGCC	1 cut(s)	430
Esp3I	CGTCTC	1 cut(s)	569
FaeI	CATG	1 cut(s)	771
FaiI	YATR	4 cut(s)	669, 719, 729, 769
FaqI	GGGAC	2 cut(s)	287, 436
FatI	CATG	1 cut(s)	767
FauI	CCCGC	4 cut(s)	130, 289, 461, 570
FbaI	TGATCA	1 cut(s)	642
FblI	GTMKAC	1 cut(s)	384
Fnu4HI	GCNGC	9 cut(s)	6, 198, 201, 352, 427, 442, 445, 483, 495
FokI	GGATG	4 cut(s)	104, 263, 701, 757
Fsp4HI	GCNGC	9 cut(s)	6, 198, 201, 352, 427, 442, 445, 483, 495
FspBI	CTAG	2 cut(s)	30, 732
GlaI	GCGC	7 cut(s)	172, 190, 430, 465, 481, 519, 521
GluI	GCNGC	9 cut(s)	6, 198, 201, 352, 427, 442, 445, 483, 495
GsaI	CCCAGC	1 cut(s)	744
HaeII	RGCGCY	1 cut(s)	432
HaeIII	GGCC	5 cut(s)	5, 234, 354, 485, 545
HapII	CCGG	7 cut(s)	359, 467, 486, 549, 603, 693, 698
HgaI	GACGC	1 cut(s)	351
HhaI	GCGC	7 cut(s)	173, 191, 431, 466, 482, 520, 522
Hin1I	GRCGYC	2 cut(s)	362, 429
Hin1II	CATG	1 cut(s)	771
Hin6I	GCGC	7 cut(s)	171, 189, 429, 464, 480, 518, 520
HinP1I	GCGC	7 cut(s)	171, 189, 429, 464, 480, 518, 520
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	5 cut(s)	378, 489, 509, 569, 764
HpaII	CCGG	7 cut(s)	359, 467, 486, 549, 603, 693, 698
HphI	GGTGA	5 cut(s)	28, 137, 286, 617, 625
Hpy166II	GTNNAC	2 cut(s)	385, 559
Hpy188I	TCNGA	4 cut(s)	319, 574, 642, 763
Hpy188III	TCNNGA	2 cut(s)	532, 792
Hpy8I	GTNNAC	2 cut(s)	385, 559
Hpy99I	CGWCG	3 cut(s)	248, 251, 386
HpyAV	CCTTC	3 cut(s)	152, 187, 235
HpyCH4IV	ACGT	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	597
HpyF10VI	GCNNNNNNNGC	8 cut(s)	197, 453, 470, 479, 491, 503, 594, 737
HpyF3I	CTNAG	1 cut(s)	626
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	2 cut(s)	362, 429
Hsp92II	CATG	1 cut(s)	771
HspAI	GCGC	7 cut(s)	171, 189, 429, 464, 480, 518, 520
KasI	GGCGCC	1 cut(s)	428
Ksp22I	TGATCA	1 cut(s)	642
Kzo9I	GATC	4 cut(s)	273, 642, 747, 788
LmnI	GCTCC	1 cut(s)	341
Lsp1109I	GCAGC	2 cut(s)	212, 428
LweI	GCATC	2 cut(s)	531, 679
MaeI	CTAG	2 cut(s)	30, 732
MaeII	ACGT	1 cut(s)	243
MalI	GATC	4 cut(s)	275, 644, 749, 790
MboI	GATC	4 cut(s)	273, 642, 747, 788
MboII	GAAGA	3 cut(s)	517, 520, 785
MflI	RGATCY	1 cut(s)	788
MhlI	GDGCHC	1 cut(s)	462
MlsI	TGGCCA	1 cut(s)	545
MluCI	AATT	1 cut(s)	92
MluNI	TGGCCA	1 cut(s)	545
Mly113I	GGCGCC	1 cut(s)	429
MlyI	GAGTC	2 cut(s)	498, 518
MmeI	TCCRAC	1 cut(s)	333
Mox20I	TGGCCA	1 cut(s)	545
MscI	TGGCCA	1 cut(s)	545
Msp20I	TGGCCA	1 cut(s)	545
MspA1I	CMGCKG	1 cut(s)	565
MspI	CCGG	7 cut(s)	359, 467, 486, 549, 603, 693, 698
MspR9I	CCNGG	1 cut(s)	359
MvnI	CGCG	9 cut(s)	171, 189, 376, 456, 464, 482, 494, 518, 520
MwoI	GCNNNNNNNGC	8 cut(s)	197, 453, 470, 479, 491, 503, 594, 737
NarI	GGCGCC	1 cut(s)	429
NciI	CCSGG	1 cut(s)	359
NdeII	GATC	4 cut(s)	273, 642, 747, 788
NlaIII	CATG	1 cut(s)	771
NlaIV	GGNNCC	2 cut(s)	337, 430
NmeAIII	GCCGAG	3 cut(s)	310, 312, 456
PauI	GCGCGC	1 cut(s)	518
PcsI	WCGNNNNNNNCGW	2 cut(s)	249, 390
PfeI	GAWTC	3 cut(s)	378, 569, 764
Pfl23II	CGTACG	1 cut(s)	513
PflFI	GACNNNGTC	1 cut(s)	400
PinAI	ACCGGT	1 cut(s)	602
PkrI	GCNGC	9 cut(s)	7, 199, 202, 353, 428, 443, 446, 484, 496
PleI	GAGTC	2 cut(s)	497, 517
PluTI	GGCGCC	1 cut(s)	432
PpsI	GAGTC	2 cut(s)	497, 517
PspFI	CCCAGC	1 cut(s)	740
PspLI	CGTACG	1 cut(s)	513
PspN4I	GGNNCC	2 cut(s)	337, 430
PspPI	GGNCC	2 cut(s)	600, 695
PsuI	RGATCY	1 cut(s)	788
PsyI	GACNNNGTC	1 cut(s)	400
PteI	GCGCGC	1 cut(s)	518
RsaI	GTAC	5 cut(s)	290, 323, 410, 515, 560
RsaNI	GTAC	5 cut(s)	289, 322, 409, 514, 559
Rsr2I	CGGWCCG	1 cut(s)	695
RsrII	CGGWCCG	1 cut(s)	695
SalI	GTCGAC	1 cut(s)	383
SatI	GCNGC	9 cut(s)	6, 198, 201, 352, 427, 442, 445, 483, 495
Sau3AI	GATC	4 cut(s)	273, 642, 747, 788
Sau96I	GGNCC	2 cut(s)	600, 695
ScaI	AGTACT	1 cut(s)	410
SchI	GAGTC	2 cut(s)	498, 518
ScrFI	CCNGG	1 cut(s)	359
SduI	GDGCHC	1 cut(s)	462
SfaNI	GCATC	2 cut(s)	531, 679
SfoI	GGCGCC	1 cut(s)	430
SgrAI	CRCCGGYG	2 cut(s)	466, 548
SinI	GGWCC	2 cut(s)	600, 695
Sse9I	AATT	1 cut(s)	92
SspDI	GGCGCC	1 cut(s)	428
SspMI	CTAG	2 cut(s)	30, 732
StyD4I	CCNGG	1 cut(s)	357
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	2 cut(s)	261, 384
TasI	AATT	1 cut(s)	92
TatI	WGTACW	1 cut(s)	408
TauI	GCSGC	7 cut(s)	8, 200, 354, 429, 447, 485, 497
TfiI	GAWTC	3 cut(s)	378, 569, 764
TscAI	CASTG	1 cut(s)	712
TseI	GCWGC	2 cut(s)	200, 441
TspDTI	ATGAA	1 cut(s)	756
TspRI	CASTG	1 cut(s)	712
Tth111I	GACNNNGTC	1 cut(s)	400
VpaK11BI	GGWCC	2 cut(s)	600, 695
XapI	RAATTY	1 cut(s)	92
XmiI	GTMKAC	1 cut(s)	384
XspI	CTAG	2 cut(s)	30, 732
ZrmI	AGTACT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.