Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0012022

Physical Location & Seq

Genomic Coordinates Reverse (-)

8179353 .. 8180114

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1062100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCCGGCGCCGCCTCTCTCTCCCTCTCTCCAAACCCTAGGCTCACCACCACCACCTCCTCCCACAGATCCTCGCTCTCTACCCCTAACTTTCTCAAATTCCCTACCCTATCCCCCACCCCCATCAAACCCCTAACCCACGCCCCCCAAACCCAAACCCCAATCTCACGCGCCACCTTCTCCACACGCGCAGCCGCCTCCACAACCCCGTCCACCACATTCCACGGCCTCTGCTACGTCGTTGGTGACAACATCGACACCGACCAGATCATCCCCGCCGAGTACCTAACCCTGGTCCCCTCCAACCCCTCCGAGTACGAGAAGCTCGGGTCGTACGCGCTCTGCGGCCTCCCCGCCTCATACTCCACGCGCTTCGTGGATCCGGGAGAGACCAAGTCCAAGTACTCGATCGTAATCGGGGGCGCCAACTTCGGGTGCGGGTCGTCGCGGGAGCACGCGCCGGTGGCGCTGGGAGCGGCGGGAGTGGCGGCGGTGGTGGCGGAGTCGTACGCTCGGATATTTTTCAGGAACTCGGTGGCGACGGGGGAGGTGTACCCGCTGGAATCGGAGGGTAGGGTTTGCGAGGAGTGCAAGACGGGGGATGTGGTGAGCATTGAGTTGAGCGAGAGCCGACTGATCAATCACACGACGGGGAAGGAGTACACGTTGAAGCCGATTGGGGACGCGGGCCCTGTTATTAGAGCGGGTGGGATCTTTGCTTATGCTAGGGAGGCTGGGATGATTCCGACTTTGACTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003861 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0016829 GO:0016835 GO:0016836 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0048229 GO:0048856 GO:0050896 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase_C

Protein Analysis

254

Amino Acids

26.61

Weight (kDa)

6.52

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase_C	PF00694	136 - 182	2.1e-17	Aconitase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43090 AT2G43090
fragaria_vesca	FvH4_5g19250 FvH4_5g19250
malus_domestica	MD04G1062100.v1.1 MD06G1055800.v1.1
prunus_persica	Prupe.5G066300_v2.0.a1
pyrus_communis	pycom04g05570 pycom06g04670
rosa_laevigata	RLG00000003506
rosa_multiflora	Rmu_sc0000876.1_g000034 Rmu_sc0001714.1_g000009
rosa_roxburghii	Rroxscaffold_3G00253550
rosa_rugosa	Rorug07G0078900
rosa_samantha	Rh7AG208600 Rh7BG207400 Rh7CG220600 Rh7DG215400
rosa_wichuraiana	Rw7G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	8, 422
AccBSI	CCGCTC	2 cut(s)	476, 704
AccII	CGCG	7 cut(s)	171, 189, 338, 370, 448, 458, 686
AclWI	GGATC	4 cut(s)	63, 374, 387, 719
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	98
AcyI	GRCGYC	2 cut(s)	9, 423
AfaI	GTAC	7 cut(s)	284, 317, 335, 404, 509, 554, 662
AfiI	CCNNNNNNNGG	2 cut(s)	292, 432
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	1 cut(s)	670
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	1 cut(s)	325
AluI	AGCT	1 cut(s)	325
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	1 cut(s)	383
AlwI	GGATC	4 cut(s)	63, 374, 387, 719
Ama87I	CYCGRG	1 cut(s)	326
AoxI	GGCC	4 cut(s)	3, 226, 346, 688
ApaI	GGGCCC	1 cut(s)	692
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	98
AspA2I	CCTAGG	1 cut(s)	38
AspLEI	GCGC	8 cut(s)	11, 173, 191, 340, 372, 425, 460, 469
AspS9I	GGNCC	3 cut(s)	295, 688, 689
AsuC2I	CCSGG	1 cut(s)	384
AsuHPI	GGTGA	3 cut(s)	37, 257, 619
AvaI	CYCGRG	1 cut(s)	326
AvaII	GGWCC	1 cut(s)	295
AvrII	CCTAGG	1 cut(s)	38
BaeGI	GKGCMC	1 cut(s)	692
BamHI	GGATCC	1 cut(s)	379
BanI	GGYRCC	2 cut(s)	8, 422
BanII	GRGCYC	1 cut(s)	692
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	1 cut(s)	203
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	293
BclI	TGATCA	1 cut(s)	636
BcnI	CCSGG	1 cut(s)	384
BcoDI	GTCTC	1 cut(s)	383
BfaI	CTAG	2 cut(s)	39, 726
BfoI	RGCGCY	3 cut(s)	12, 426, 470
BisI	GCNGC	6 cut(s)	12, 192, 195, 346, 477, 489
BlnI	CCTAGG	1 cut(s)	38
BlsI	GCNGC	6 cut(s)	13, 193, 196, 347, 478, 490
BmcAI	AGTACT	1 cut(s)	404
Bme1390I	CCNGG	2 cut(s)	293, 384
Bme18I	GGWCC	1 cut(s)	295
BmeT110I	CYCGRG	1 cut(s)	326
BmgT120I	GGNCC	3 cut(s)	295, 688, 689
BmiI	GGNNCC	5 cut(s)	10, 297, 381, 424, 690
BmrFI	CCNGG	2 cut(s)	293, 384
BpuMI	CCSGG	1 cut(s)	384
BsaBI	GATNNNNATC	1 cut(s)	413
BsaHI	GRCGYC	2 cut(s)	9, 423
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	3 cut(s)	38, 223, 291
BsaXI	ACNNNNNCTCC	2 cut(s)	650, 680
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 432
Bse118I	RCCGGY	2 cut(s)	5, 460
Bse8I	GATNNNNATC	1 cut(s)	413
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	3 cut(s)	38, 223, 291
BseGI	GGATG	3 cut(s)	270, 607, 744
BseJI	GATNNNNATC	1 cut(s)	413
BseLI	CCNNNNNNNGG	2 cut(s)	292, 432
BseRI	GAGGAG	2 cut(s)	49, 599
BseSI	GKGCMC	1 cut(s)	692
BseXI	GCAGC	1 cut(s)	203
BseYI	CCCAGC	2 cut(s)	469, 734
Bsh1236I	CGCG	7 cut(s)	171, 189, 338, 370, 448, 458, 686
Bsh1285I	CGRYCG	1 cut(s)	411
BshFI	GGCC	4 cut(s)	5, 228, 348, 690
BshNI	GGYRCC	2 cut(s)	8, 422
BsiEI	CGRYCG	1 cut(s)	411
BsiHKAI	GWGCWC	1 cut(s)	456
BsiHKCI	CYCGRG	1 cut(s)	326
BsiSI	CCGG	3 cut(s)	6, 383, 461
BsiWI	CGTACG	2 cut(s)	333, 507
BslFI	GGGAC	2 cut(s)	281, 695
BslI	CCNNNNNNNGG	2 cut(s)	292, 432
BsmAI	GTCTC	1 cut(s)	383
BsmFI	GGGAC	2 cut(s)	281, 695
BsnI	GGCC	4 cut(s)	5, 228, 348, 690
Bso31I	GGTCTC	1 cut(s)	383
BsoBI	CYCGRG	1 cut(s)	326
Bsp120I	GGGCCC	1 cut(s)	688
Bsp1286I	GDGCHC	2 cut(s)	456, 692
Bsp143I	GATC	6 cut(s)	68, 267, 379, 408, 636, 711
BspANI	GGCC	4 cut(s)	5, 228, 348, 690
BspFNI	CGCG	7 cut(s)	171, 189, 338, 370, 448, 458, 686
BspLI	GGNNCC	5 cut(s)	10, 297, 381, 424, 690
BspPI	GGATC	4 cut(s)	63, 374, 387, 719
BspT107I	GGYRCC	2 cut(s)	8, 422
BspTNI	GGTCTC	1 cut(s)	383
BsrBI	CCGCTC	2 cut(s)	476, 704
BsrFI	RCCGGY	2 cut(s)	5, 460
BssAI	RCCGGY	2 cut(s)	5, 460
BssECI	CCNNGG	3 cut(s)	38, 223, 291
BssMI	GATC	6 cut(s)	68, 267, 379, 408, 636, 711
BssNI	GRCGYC	2 cut(s)	9, 423
BssT1I	CCWWGG	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	293
BstACI	GRCGYC	2 cut(s)	9, 423
BstC8I	GCNNGC	3 cut(s)	7, 456, 688
BstDEI	CTNAG	1 cut(s)	759
BstDSI	CCRYGG	1 cut(s)	223
BstF5I	GGATG	3 cut(s)	270, 607, 744
BstFNI	CGCG	7 cut(s)	171, 189, 338, 370, 448, 458, 686
BstH2I	RGCGCY	3 cut(s)	12, 426, 470
BstHHI	GCGC	8 cut(s)	11, 173, 191, 340, 372, 425, 460, 469
BstKTI	GATC	6 cut(s)	71, 270, 382, 411, 639, 714
BstMAI	GTCTC	1 cut(s)	383
BstMBI	GATC	6 cut(s)	68, 267, 379, 408, 636, 711
BstMCI	CGRYCG	1 cut(s)	411
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 464, 466, 473, 485, 497, 588, 731
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	2 cut(s)	291, 382
BstSLI	GKGCMC	1 cut(s)	692
BstUI	CGCG	7 cut(s)	171, 189, 338, 370, 448, 458, 686
BstV1I	GCAGC	1 cut(s)	203
BstX2I	RGATCY	3 cut(s)	68, 379, 711
BstYI	RGATCY	3 cut(s)	68, 379, 711
BsuRI	GGCC	4 cut(s)	5, 228, 348, 690
BtgI	CCRYGG	1 cut(s)	223
BtsCI	GGATG	3 cut(s)	270, 607, 744
Cac8I	GCNNGC	3 cut(s)	7, 456, 688
CfoI	GCGC	8 cut(s)	11, 173, 191, 340, 372, 425, 460, 469
Cfr10I	RCCGGY	2 cut(s)	5, 460
Cfr13I	GGNCC	3 cut(s)	295, 688, 689
CseI	GACGC	1 cut(s)	692
Csp6I	GTAC	7 cut(s)	283, 316, 334, 403, 508, 553, 661
CviQI	GTAC	7 cut(s)	283, 316, 334, 403, 508, 553, 661
DdeI	CTNAG	1 cut(s)	759
DinI	GGCGCC	2 cut(s)	10, 424
DpnI	GATC	6 cut(s)	70, 269, 381, 410, 638, 713
DpnII	GATC	6 cut(s)	68, 267, 379, 408, 636, 711
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	515
Eco130I	CCWWGG	1 cut(s)	38
Eco24I	GRGCYC	1 cut(s)	692
Eco31I	GGTCTC	1 cut(s)	383
Eco47I	GGWCC	1 cut(s)	295
Eco88I	CYCGRG	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	689
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	38
EcoT38I	GRGCYC	1 cut(s)	692
EgeI	GGCGCC	2 cut(s)	10, 424
EheI	GGCGCC	2 cut(s)	10, 424
ErhI	CCWWGG	1 cut(s)	38
FaiI	YATR	2 cut(s)	361, 723
FaqI	GGGAC	2 cut(s)	281, 695
FauI	CCCGC	8 cut(s)	283, 361, 431, 441, 472, 564, 679, 697
FbaI	TGATCA	1 cut(s)	636
Fnu4HI	GCNGC	6 cut(s)	12, 192, 195, 346, 477, 489
FokI	GGATG	3 cut(s)	257, 614, 751
FriOI	GRGCYC	1 cut(s)	692
Fsp4HI	GCNGC	6 cut(s)	12, 192, 195, 346, 477, 489
FspBI	CTAG	2 cut(s)	39, 726
GlaI	GCGC	8 cut(s)	10, 172, 190, 339, 371, 424, 459, 468
GluI	GCNGC	6 cut(s)	12, 192, 195, 346, 477, 489
GsaI	CCCAGC	2 cut(s)	473, 738
HaeII	RGCGCY	3 cut(s)	12, 426, 470
HaeIII	GGCC	4 cut(s)	5, 228, 348, 690
HapII	CCGG	3 cut(s)	6, 383, 461
HgaI	GACGC	1 cut(s)	692
HhaI	GCGC	8 cut(s)	11, 173, 191, 340, 372, 425, 460, 469
Hin1I	GRCGYC	2 cut(s)	9, 423
Hin6I	GCGC	8 cut(s)	9, 171, 189, 338, 370, 423, 458, 467
HinP1I	GCGC	8 cut(s)	9, 171, 189, 338, 370, 423, 458, 467
HinfI	GANTC	3 cut(s)	503, 563, 742
HpaII	CCGG	3 cut(s)	6, 383, 461
HphI	GGTGA	3 cut(s)	37, 257, 619
Hpy166II	GTNNAC	3 cut(s)	213, 553, 663
Hpy188I	TCNGA	4 cut(s)	313, 516, 568, 747
Hpy188III	TCNNGA	1 cut(s)	526
Hpy8I	GTNNAC	3 cut(s)	213, 553, 663
Hpy99I	CGWCG	4 cut(s)	242, 448, 544, 652
HpyAV	CCTTC	2 cut(s)	187, 649
HpyCH4IV	ACGT	2 cut(s)	237, 665
HpyCH4V	TGCA	1 cut(s)	591
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 464, 466, 473, 485, 497, 588, 731
HpyF3I	CTNAG	1 cut(s)	759
HpySE526I	ACGT	2 cut(s)	237, 665
Hsp92I	GRCGYC	2 cut(s)	9, 423
HspAI	GCGC	8 cut(s)	9, 171, 189, 338, 370, 423, 458, 467
KasI	GGCGCC	2 cut(s)	8, 422
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	636
Kzo9I	GATC	6 cut(s)	68, 267, 379, 408, 636, 711
LmnI	GCTCC	2 cut(s)	451, 473
Lsp1109I	GCAGC	1 cut(s)	203
MaeI	CTAG	2 cut(s)	39, 726
MaeII	ACGT	2 cut(s)	237, 665
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	6 cut(s)	70, 269, 381, 410, 638, 713
MbiI	CCGCTC	2 cut(s)	476, 704
MboI	GATC	6 cut(s)	68, 267, 379, 408, 636, 711
MflI	RGATCY	3 cut(s)	68, 379, 711
MhlI	GDGCHC	2 cut(s)	456, 692
MluCI	AATT	1 cut(s)	98
Mly113I	GGCGCC	2 cut(s)	9, 423
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	1 cut(s)	327
MroNI	GCCGGC	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	559
MspI	CCGG	3 cut(s)	6, 383, 461
MspR9I	CCNGG	2 cut(s)	293, 384
MvaI	CCWGG	1 cut(s)	293
MvnI	CGCG	7 cut(s)	171, 189, 338, 370, 448, 458, 686
MwoI	GCNNNNNNNGC	8 cut(s)	11, 464, 466, 473, 485, 497, 588, 731
NaeI	GCCGGC	1 cut(s)	7
NarI	GGCGCC	2 cut(s)	9, 423
NciI	CCSGG	1 cut(s)	384
NdeII	GATC	6 cut(s)	68, 267, 379, 408, 636, 711
NgoMIV	GCCGGC	1 cut(s)	5
NlaIV	GGNNCC	5 cut(s)	10, 297, 381, 424, 690
NmeAIII	GCCGAG	1 cut(s)	304
NmuCI	GTSAC	1 cut(s)	245
PcsI	WCGNNNNNNNCGW	1 cut(s)	671
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	2 cut(s)	563, 742
Pfl23II	CGTACG	2 cut(s)	333, 507
PflFI	GACNNNGTC	1 cut(s)	394
PfoI	TCCNGGA	1 cut(s)	382
PkrI	GCNGC	6 cut(s)	13, 193, 196, 347, 478, 490
Ple19I	CGATCG	1 cut(s)	411
PleI	GAGTC	1 cut(s)	511
PluTI	GGCGCC	2 cut(s)	12, 426
PpsI	GAGTC	1 cut(s)	511
Psp6I	CCWGG	1 cut(s)	291
PspFI	CCCAGC	2 cut(s)	469, 734
PspGI	CCWGG	1 cut(s)	291
PspLI	CGTACG	2 cut(s)	333, 507
PspN4I	GGNNCC	5 cut(s)	10, 297, 381, 424, 690
PspOMI	GGGCCC	1 cut(s)	688
PspPI	GGNCC	3 cut(s)	295, 688, 689
PsuI	RGATCY	3 cut(s)	68, 379, 711
PsyI	GACNNNGTC	1 cut(s)	394
PvuI	CGATCG	1 cut(s)	411
RsaI	GTAC	7 cut(s)	284, 317, 335, 404, 509, 554, 662
RsaNI	GTAC	7 cut(s)	283, 316, 334, 403, 508, 553, 661
SatI	GCNGC	6 cut(s)	12, 192, 195, 346, 477, 489
Sau3AI	GATC	6 cut(s)	68, 267, 379, 408, 636, 711
Sau96I	GGNCC	3 cut(s)	295, 688, 689
ScaI	AGTACT	1 cut(s)	404
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	2 cut(s)	293, 384
SduI	GDGCHC	2 cut(s)	456, 692
SetI	ASST	7 cut(s)	59, 179, 240, 288, 327, 552, 668
SfoI	GGCGCC	2 cut(s)	10, 424
SgrAI	CRCCGGYG	1 cut(s)	460
SinI	GGWCC	1 cut(s)	295
Sse9I	AATT	1 cut(s)	98
SspDI	GGCGCC	2 cut(s)	8, 422
SspMI	CTAG	2 cut(s)	39, 726
StyD4I	CCNGG	2 cut(s)	291, 382
StyI	CCWWGG	1 cut(s)	38
TaiI	ACGT	2 cut(s)	240, 668
TaqI	TCGA	2 cut(s)	255, 407
TasI	AATT	1 cut(s)	98
TatI	WGTACW	2 cut(s)	402, 660
TauI	GCSGC	5 cut(s)	14, 197, 348, 479, 491
TfiI	GAWTC	2 cut(s)	563, 742
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	245
Tth111I	GACNNNGTC	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	295
XapI	RAATTY	1 cut(s)	98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmaJI	CCTAGG	1 cut(s)	38
XspI	CTAG	2 cut(s)	39, 726
ZrmI	AGTACT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.