Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0012022

Physical Location & Seq

Genomic Coordinates Reverse (-)

8325786 .. 8326923

Gene Structure 1138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1055800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCCGGCGCCGCCACTCTCTCTCTGTCTCCAAACTCTAGCTTCACCACCTCCTCCTCCCACAAACCCTCTCTGTCTACACCTAACTTTCTCAAATTCCCAACCCTATCCCCCATCCCCATCAAACCCCTCACCCACGCCCCCCAATCCCAAATCCCAATCTCACGCGCCACCTTCACCACACGCGCAGCCGCCTCCCCAACCCCATCCACCACATTCCACGGCCTCTGCTACGTCGTCAGCGACAACATAGACACCGACCAGATCATCCCCGCCGAGTACCTAACCCTGGTCCCCTCCAACCCCTCCGAGTACGAGAAGCTCGGGTCTTACGCGCTCTGCGGCCTCCCCGGCTCCTACTCAACGCGCTTCGTGGATCCGGGAGAGACCAGGTCGAAGTACTCGATCATAATCGGGGGCGCCAACTTCGGGTGCGGGTCGTCGCGGGAGCACGCGCCGGTGGCGCTGGGAGCGGCGGGAGTGGCGGCGGTGGTAGCGGAGTCGTACGCGCGGATCTTCTTCAGGAACTCGGTGGCGACGGGGGAGGTGTACCCGCTGGAATCGGAGGGTAGGGTTTGCGAGGAGTGCAAGACGGGGGATGTGGTGAGCATTGAGTTGAGCGAGAGCCGTCTGATCAATCACACGACGGGGAAGGAGTACACGTTGAAGCCGATCGGGGACGCGGGCCCCGTGATTAGGGCTGGTGGGATCTTTGCTTATGCGAGGGAGGCTGGGATGATTCCTACTTTGACTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003861 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0016829 GO:0016835 GO:0016836 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0048229 GO:0048856 GO:0050896 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase_C

Protein Analysis

253

Amino Acids

26.54

Weight (kDa)

6.21

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase_C	PF00694	135 - 181	4.6e-17	Aconitase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43090 AT2G43090
fragaria_vesca	FvH4_5g19250 FvH4_5g19250
malus_domestica	MD04G1062100.v1.1 MD06G1055800.v1.1
prunus_persica	Prupe.5G066300_v2.0.a1
pyrus_communis	pycom04g05570 pycom06g04670
rosa_laevigata	RLG00000003506
rosa_multiflora	Rmu_sc0000876.1_g000034 Rmu_sc0001714.1_g000009
rosa_roxburghii	Rroxscaffold_3G00253550
rosa_rugosa	Rorug07G0078900
rosa_samantha	Rh7AG208600 Rh7BG207400 Rh7CG220600 Rh7DG215400
rosa_wichuraiana	Rw7G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	8, 419
AccBSI	CCGCTC	1 cut(s)	473
AccI	GTMKAC	1 cut(s)	77
AccII	CGCG	9 cut(s)	168, 186, 335, 367, 445, 455, 509, 511, 683
AclWI	GGATC	4 cut(s)	371, 384, 521, 716
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	505
AcyI	GRCGYC	2 cut(s)	9, 420
AfaI	GTAC	6 cut(s)	281, 314, 401, 506, 551, 659
AfiI	CCNNNNNNNGG	3 cut(s)	289, 429, 696
AflIII	ACRYGT	1 cut(s)	660
AgsI	TTSAA	1 cut(s)	667
AjnI	CCWGG	2 cut(s)	288, 389
AluBI	AGCT	2 cut(s)	42, 322
AluI	AGCT	2 cut(s)	42, 322
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	2 cut(s)	33, 380
AlwI	GGATC	4 cut(s)	371, 384, 521, 716
Ama87I	CYCGRG	1 cut(s)	323
AoxI	GGCC	4 cut(s)	3, 223, 343, 685
ApaI	GGGCCC	1 cut(s)	689
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	95
AspLEI	GCGC	9 cut(s)	11, 170, 188, 337, 369, 422, 457, 466, 511
AspS9I	GGNCC	3 cut(s)	292, 685, 686
AsuC2I	CCSGG	2 cut(s)	351, 381
AsuHPI	GGTGA	4 cut(s)	37, 124, 169, 616
AvaI	CYCGRG	1 cut(s)	323
AvaII	GGWCC	1 cut(s)	292
BaeGI	GKGCMC	1 cut(s)	689
BamHI	GGATCC	1 cut(s)	376
BanI	GGYRCC	2 cut(s)	8, 419
BanII	GRGCYC	1 cut(s)	689
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	3 cut(s)	122, 128, 214
BceAI	ACGGC	2 cut(s)	238, 612
BciT130I	CCWGG	2 cut(s)	290, 391
BclI	TGATCA	1 cut(s)	633
BcnI	CCSGG	2 cut(s)	351, 381
BcoDI	GTCTC	2 cut(s)	33, 380
BfaI	CTAG	1 cut(s)	39
BfoI	RGCGCY	3 cut(s)	12, 423, 467
BglI	GCCNNNNNGGC	1 cut(s)	351
BisI	GCNGC	6 cut(s)	12, 189, 192, 343, 474, 486
BlsI	GCNGC	6 cut(s)	13, 190, 193, 344, 475, 487
BmcAI	AGTACT	1 cut(s)	401
Bme1390I	CCNGG	4 cut(s)	290, 351, 381, 391
Bme18I	GGWCC	1 cut(s)	292
BmeT110I	CYCGRG	1 cut(s)	323
BmgT120I	GGNCC	3 cut(s)	292, 685, 686
BmiI	GGNNCC	7 cut(s)	10, 294, 355, 378, 421, 687, 688
BmrFI	CCNGG	4 cut(s)	290, 351, 381, 391
BpuMI	CCSGG	2 cut(s)	351, 381
BsaBI	GATNNNNATC	1 cut(s)	410
BsaHI	GRCGYC	2 cut(s)	9, 420
BsaI	GGTCTC	1 cut(s)	380
BsaJI	CCNNGG	3 cut(s)	220, 288, 349
BsaXI	ACNNNNNCTCC	2 cut(s)	647, 677
Bsc4I	CCNNNNNNNGG	3 cut(s)	289, 429, 696
Bse118I	RCCGGY	2 cut(s)	5, 457
Bse8I	GATNNNNATC	1 cut(s)	410
BseBI	CCWGG	2 cut(s)	290, 391
BseDI	CCNNGG	3 cut(s)	220, 288, 349
BseGI	GGATG	5 cut(s)	114, 206, 267, 604, 741
BseJI	GATNNNNATC	1 cut(s)	410
BseLI	CCNNNNNNNGG	3 cut(s)	289, 429, 696
BseRI	GAGGAG	3 cut(s)	43, 46, 596
BseSI	GKGCMC	1 cut(s)	689
BseXI	GCAGC	1 cut(s)	200
BseYI	CCCAGC	2 cut(s)	466, 731
Bsh1236I	CGCG	9 cut(s)	168, 186, 335, 367, 445, 455, 509, 511, 683
Bsh1285I	CGRYCG	1 cut(s)	675
BshFI	GGCC	4 cut(s)	5, 225, 345, 687
BshNI	GGYRCC	2 cut(s)	8, 419
BsiEI	CGRYCG	1 cut(s)	675
BsiHKAI	GWGCWC	1 cut(s)	453
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	4 cut(s)	6, 351, 380, 458
BsiWI	CGTACG	1 cut(s)	504
BslFI	GGGAC	2 cut(s)	278, 692
BslI	CCNNNNNNNGG	3 cut(s)	289, 429, 696
BsmAI	GTCTC	2 cut(s)	33, 380
BsmFI	GGGAC	2 cut(s)	278, 692
BsnI	GGCC	4 cut(s)	5, 225, 345, 687
Bso31I	GGTCTC	1 cut(s)	380
BsoBI	CYCGRG	1 cut(s)	323
Bsp120I	GGGCCC	1 cut(s)	685
Bsp1286I	GDGCHC	2 cut(s)	453, 689
Bsp143I	GATC	7 cut(s)	264, 376, 405, 513, 633, 672, 708
BspANI	GGCC	4 cut(s)	5, 225, 345, 687
BspFNI	CGCG	9 cut(s)	168, 186, 335, 367, 445, 455, 509, 511, 683
BspLI	GGNNCC	7 cut(s)	10, 294, 355, 378, 421, 687, 688
BspPI	GGATC	4 cut(s)	371, 384, 521, 716
BspT107I	GGYRCC	2 cut(s)	8, 419
BspTNI	GGTCTC	1 cut(s)	380
BsrBI	CCGCTC	1 cut(s)	473
BsrFI	RCCGGY	2 cut(s)	5, 457
BssAI	RCCGGY	2 cut(s)	5, 457
BssECI	CCNNGG	3 cut(s)	220, 288, 349
BssMI	GATC	7 cut(s)	264, 376, 405, 513, 633, 672, 708
BssNI	GRCGYC	2 cut(s)	9, 420
Bst2UI	CCWGG	2 cut(s)	290, 391
BstACI	GRCGYC	2 cut(s)	9, 420
BstC8I	GCNNGC	3 cut(s)	7, 453, 685
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	5 cut(s)	114, 206, 267, 604, 741
BstFNI	CGCG	9 cut(s)	168, 186, 335, 367, 445, 455, 509, 511, 683
BstH2I	RGCGCY	3 cut(s)	12, 423, 467
BstHHI	GCGC	9 cut(s)	11, 170, 188, 337, 369, 422, 457, 466, 511
BstKTI	GATC	7 cut(s)	267, 379, 408, 516, 636, 675, 711
BstMAI	GTCTC	2 cut(s)	33, 380
BstMBI	GATC	7 cut(s)	264, 376, 405, 513, 633, 672, 708
BstMCI	CGRYCG	1 cut(s)	675
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 351, 461, 463, 470, 482, 494, 585, 728
BstNI	CCWGG	2 cut(s)	290, 391
BstSCI	CCNGG	4 cut(s)	288, 349, 379, 389
BstSLI	GKGCMC	1 cut(s)	689
BstUI	CGCG	9 cut(s)	168, 186, 335, 367, 445, 455, 509, 511, 683
BstV1I	GCAGC	1 cut(s)	200
BstX2I	RGATCY	3 cut(s)	376, 513, 708
BstYI	RGATCY	3 cut(s)	376, 513, 708
BsuRI	GGCC	4 cut(s)	5, 225, 345, 687
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	5 cut(s)	114, 206, 267, 604, 741
Cac8I	GCNNGC	3 cut(s)	7, 453, 685
CfoI	GCGC	9 cut(s)	11, 170, 188, 337, 369, 422, 457, 466, 511
Cfr10I	RCCGGY	2 cut(s)	5, 457
Cfr13I	GGNCC	3 cut(s)	292, 685, 686
CseI	GACGC	1 cut(s)	689
CsiI	ACCWGGT	1 cut(s)	389
Csp6I	GTAC	6 cut(s)	280, 313, 400, 505, 550, 658
CviQI	GTAC	6 cut(s)	280, 313, 400, 505, 550, 658
DinI	GGCGCC	2 cut(s)	10, 421
DpnI	GATC	7 cut(s)	266, 378, 407, 515, 635, 674, 710
DpnII	GATC	7 cut(s)	264, 376, 405, 513, 633, 672, 708
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	689
Eco31I	GGTCTC	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	505
Eco88I	CYCGRG	1 cut(s)	323
EcoO109I	RGGNCCY	1 cut(s)	686
EcoRII	CCWGG	2 cut(s)	288, 389
EcoT38I	GRGCYC	1 cut(s)	689
EgeI	GGCGCC	2 cut(s)	10, 421
EheI	GGCGCC	2 cut(s)	10, 421
FaiI	YATR	3 cut(s)	251, 410, 720
FaqI	GGGAC	2 cut(s)	278, 692
FauI	CCCGC	6 cut(s)	280, 428, 438, 469, 561, 676
FbaI	TGATCA	1 cut(s)	633
FblI	GTMKAC	1 cut(s)	77
Fnu4HI	GCNGC	6 cut(s)	12, 189, 192, 343, 474, 486
FokI	GGATG	5 cut(s)	101, 193, 254, 611, 748
FriOI	GRGCYC	1 cut(s)	689
Fsp4HI	GCNGC	6 cut(s)	12, 189, 192, 343, 474, 486
FspBI	CTAG	1 cut(s)	39
GlaI	GCGC	9 cut(s)	10, 169, 187, 336, 368, 421, 456, 465, 510
GluI	GCNGC	6 cut(s)	12, 189, 192, 343, 474, 486
GsaI	CCCAGC	2 cut(s)	470, 735
HaeII	RGCGCY	3 cut(s)	12, 423, 467
HaeIII	GGCC	4 cut(s)	5, 225, 345, 687
HapII	CCGG	4 cut(s)	6, 351, 380, 458
HgaI	GACGC	1 cut(s)	689
HhaI	GCGC	9 cut(s)	11, 170, 188, 337, 369, 422, 457, 466, 511
Hin1I	GRCGYC	2 cut(s)	9, 420
Hin6I	GCGC	9 cut(s)	9, 168, 186, 335, 367, 420, 455, 464, 509
HinP1I	GCGC	9 cut(s)	9, 168, 186, 335, 367, 420, 455, 464, 509
HinfI	GANTC	3 cut(s)	500, 560, 739
HpaII	CCGG	4 cut(s)	6, 351, 380, 458
HphI	GGTGA	4 cut(s)	37, 124, 169, 616
Hpy166II	GTNNAC	3 cut(s)	78, 550, 660
Hpy188I	TCNGA	3 cut(s)	310, 565, 633
Hpy188III	TCNNGA	1 cut(s)	523
Hpy8I	GTNNAC	3 cut(s)	78, 550, 660
Hpy99I	CGWCG	4 cut(s)	239, 445, 541, 649
HpyAV	CCTTC	2 cut(s)	184, 646
HpyCH4IV	ACGT	2 cut(s)	234, 662
HpyCH4V	TGCA	1 cut(s)	588
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 351, 461, 463, 470, 482, 494, 585, 728
HpySE526I	ACGT	2 cut(s)	234, 662
Hsp92I	GRCGYC	2 cut(s)	9, 420
HspAI	GCGC	9 cut(s)	9, 168, 186, 335, 367, 420, 455, 464, 509
KasI	GGCGCC	2 cut(s)	8, 419
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	633
Kzo9I	GATC	7 cut(s)	264, 376, 405, 513, 633, 672, 708
LmnI	GCTCC	3 cut(s)	359, 448, 470
Lsp1109I	GCAGC	1 cut(s)	200
MabI	ACCWGGT	1 cut(s)	389
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	2 cut(s)	234, 662
MalI	GATC	7 cut(s)	266, 378, 407, 515, 635, 674, 710
MbiI	CCGCTC	1 cut(s)	473
MboI	GATC	7 cut(s)	264, 376, 405, 513, 633, 672, 708
MboII	GAAGA	2 cut(s)	508, 511
MflI	RGATCY	3 cut(s)	376, 513, 708
MhlI	GDGCHC	2 cut(s)	453, 689
MluCI	AATT	1 cut(s)	95
Mly113I	GGCGCC	2 cut(s)	9, 420
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	1 cut(s)	324
MroNI	GCCGGC	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	556
MspI	CCGG	4 cut(s)	6, 351, 380, 458
MspR9I	CCNGG	4 cut(s)	290, 351, 381, 391
MvaI	CCWGG	2 cut(s)	290, 391
MvnI	CGCG	9 cut(s)	168, 186, 335, 367, 445, 455, 509, 511, 683
MwoI	GCNNNNNNNGC	9 cut(s)	11, 351, 461, 463, 470, 482, 494, 585, 728
NaeI	GCCGGC	1 cut(s)	7
NarI	GGCGCC	2 cut(s)	9, 420
NciI	CCSGG	2 cut(s)	351, 381
NdeII	GATC	7 cut(s)	264, 376, 405, 513, 633, 672, 708
NgoMIV	GCCGGC	1 cut(s)	5
NlaIV	GGNNCC	7 cut(s)	10, 294, 355, 378, 421, 687, 688
NmeAIII	GCCGAG	1 cut(s)	301
PcsI	WCGNNNNNNNCGW	4 cut(s)	240, 401, 668, 687
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	2 cut(s)	560, 739
Pfl23II	CGTACG	1 cut(s)	504
PflFI	GACNNNGTC	1 cut(s)	391
PfoI	TCCNGGA	1 cut(s)	379
PkrI	GCNGC	6 cut(s)	13, 190, 193, 344, 475, 487
Ple19I	CGATCG	1 cut(s)	675
PleI	GAGTC	1 cut(s)	508
PluTI	GGCGCC	2 cut(s)	12, 423
PpsI	GAGTC	1 cut(s)	508
Psp6I	CCWGG	2 cut(s)	288, 389
PspFI	CCCAGC	2 cut(s)	466, 731
PspGI	CCWGG	2 cut(s)	288, 389
PspLI	CGTACG	1 cut(s)	504
PspN4I	GGNNCC	7 cut(s)	10, 294, 355, 378, 421, 687, 688
PspOMI	GGGCCC	1 cut(s)	685
PspPI	GGNCC	3 cut(s)	292, 685, 686
PsuI	RGATCY	3 cut(s)	376, 513, 708
PsyI	GACNNNGTC	1 cut(s)	391
PvuI	CGATCG	1 cut(s)	675
RsaI	GTAC	6 cut(s)	281, 314, 401, 506, 551, 659
RsaNI	GTAC	6 cut(s)	280, 313, 400, 505, 550, 658
SatI	GCNGC	6 cut(s)	12, 189, 192, 343, 474, 486
Sau3AI	GATC	7 cut(s)	264, 376, 405, 513, 633, 672, 708
Sau96I	GGNCC	3 cut(s)	292, 685, 686
ScaI	AGTACT	1 cut(s)	401
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	4 cut(s)	290, 351, 381, 391
SduI	GDGCHC	2 cut(s)	453, 689
SexAI	ACCWGGT	1 cut(s)	389
SfoI	GGCGCC	2 cut(s)	10, 421
SgrAI	CRCCGGYG	1 cut(s)	457
SinI	GGWCC	1 cut(s)	292
Sse9I	AATT	1 cut(s)	95
SspDI	GGCGCC	2 cut(s)	8, 419
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	4 cut(s)	288, 349, 379, 389
TaiI	ACGT	2 cut(s)	237, 665
TaqI	TCGA	2 cut(s)	395, 404
TasI	AATT	1 cut(s)	95
TatI	WGTACW	2 cut(s)	399, 657
TauI	GCSGC	5 cut(s)	14, 194, 345, 476, 488
TfiI	GAWTC	2 cut(s)	560, 739
TseI	GCWGC	1 cut(s)	188
Tth111I	GACNNNGTC	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	292
XapI	RAATTY	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	77
XspI	CTAG	1 cut(s)	39
ZrmI	AGTACT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.