Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0012022

Physical Location & Seq

Genomic Coordinates Reverse (-)

49385939 .. 49387144

Gene Structure 1206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003506

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCGGCCACCTCCCTCTCCGTCTCTCCAAACCCTAGCTTCACCACCACCACCTCCCACAAACTCTCTCCCTCTCTCTCGACCCCAACCCACCTCAAATTCCCAACCACCACCACCACCACCACCACCTCACCCATCCCCGCCAAATCCCTATCCACCCTTCACCTCTCTCAAACCCCAACCCCACGGGCCACCTTCTCCACACGCGCCTCCGCCGCCGCCTCCACCACTCCCTCCACCACCTTCCACGGCCTCTGCTACGTCGTCGGCGACAACATCGACACCGACCAGATCATCCCCGCCGAGTACCTCACCCTCGTCCCCTCCAACCCCTCCGAGTACGAGAAGCTCGGCTCCTACGCCCTCTGCGGCCTCCCGGCGTCCTACTCCACGCGCTTCGTCGACCCCAACGAGACCAAGTCCAAGTACTCCATCGTCATCGGCGGCGCCAACTTCGGCTGCGGCTCGTCCCGTGAGCACGCGCCGGTGGCTCTCGGCGCGGCGGGAGTGGCGGCGGTGGTGGCGGAGTCGTACGCGCGCATCTTCTTCAGGAACTCGGTGGCCACCGGCGAGGTGTACCCGCTGGAATCGGAGACGAGGATTTGCGAGGAGTGCAGGACCGGTGATGTGGTGAGCATTGAGCTGAGCGAGAGCCGTCTGATCAATCACACGACTGGGAAAGAGTATGTGTTGAAGCCCATCGGGGATGCCGGTCCGGTTATCAGAGCCGGTGGGATATTTGCTTATGCTAGAGAGGCTGGGATGATTCCAACTTTGTCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003861 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0016829 GO:0016835 GO:0016836 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0048229 GO:0048856 GO:0050896 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase_C

Protein Analysis

262

Amino Acids

27.42

Weight (kDa)

6.3

Isoelectric Point (pI)

37.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase_C	PF00694	142 - 190	1.4e-17	Aconitase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43090 AT2G43090
fragaria_vesca	FvH4_5g19250 FvH4_5g19250
malus_domestica	MD04G1062100.v1.1 MD06G1055800.v1.1
prunus_persica	Prupe.5G066300_v2.0.a1
pyrus_communis	pycom04g05570 pycom06g04670
rosa_laevigata	RLG00000003506
rosa_multiflora	Rmu_sc0000876.1_g000034 Rmu_sc0001714.1_g000009
rosa_roxburghii	Rroxscaffold_3G00253550
rosa_rugosa	Rorug07G0078900
rosa_samantha	Rh7AG208600 Rh7BG207400 Rh7CG220600 Rh7DG215400
rosa_wichuraiana	Rw7G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	446
AccI	GTMKAC	1 cut(s)	402
AccII	CGCG	6 cut(s)	207, 394, 482, 500, 536, 538
AcoI	YGGCCR	2 cut(s)	6, 561
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	532
AcyI	GRCGYC	2 cut(s)	380, 447
AfaI	GTAC	5 cut(s)	308, 341, 428, 533, 578
AgeI	ACCGGT	1 cut(s)	620
AgsI	TTSAA	1 cut(s)	694
AluBI	AGCT	3 cut(s)	39, 349, 643
AluI	AGCT	3 cut(s)	39, 349, 643
Alw21I	GWGCWC	1 cut(s)	480
Alw26I	GTCTC	3 cut(s)	28, 407, 587
AoxI	GGCC	5 cut(s)	6, 189, 250, 370, 561
ApeKI	GCWGC	1 cut(s)	459
ApoI	RAATTY	1 cut(s)	98
AsiGI	ACCGGT	1 cut(s)	620
AspLEI	GCGC	7 cut(s)	209, 396, 449, 484, 500, 538, 540
AspS9I	GGNCC	3 cut(s)	189, 618, 713
AsuC2I	CCSGG	1 cut(s)	377
AsuHPI	GGTGA	6 cut(s)	34, 123, 155, 304, 635, 643
AvaII	GGWCC	2 cut(s)	618, 713
BalI	TGGCCA	1 cut(s)	563
BanI	GGYRCC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	480
BbvI	GCAGC	1 cut(s)	446
BccI	CCATC	3 cut(s)	143, 440, 707
BceAI	ACGGC	2 cut(s)	265, 639
BclI	TGATCA	1 cut(s)	660
BcnI	CCSGG	1 cut(s)	377
BcoDI	GTCTC	3 cut(s)	28, 407, 587
BfaI	CTAG	2 cut(s)	36, 750
BfoI	RGCGCY	1 cut(s)	450
BisI	GCNGC	9 cut(s)	6, 216, 219, 370, 445, 460, 463, 501, 513
BlpI	GCTNAGC	1 cut(s)	644
BlsI	GCNGC	9 cut(s)	7, 217, 220, 371, 446, 461, 464, 502, 514
BmcAI	AGTACT	1 cut(s)	428
Bme1390I	CCNGG	1 cut(s)	377
Bme18I	GGWCC	2 cut(s)	618, 713
BmgT120I	GGNCC	3 cut(s)	189, 618, 713
BmiI	GGNNCC	2 cut(s)	355, 448
BmrFI	CCNGG	1 cut(s)	377
BmrI	ACTGGG	1 cut(s)	684
BmsI	GCATC	2 cut(s)	549, 697
BmuI	ACTGGG	1 cut(s)	684
Bpu1102I	GCTNAGC	1 cut(s)	644
BpuMI	CCSGG	1 cut(s)	377
BsaHI	GRCGYC	2 cut(s)	380, 447
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	2 cut(s)	185, 247
BsaWI	WCCGGW	2 cut(s)	620, 715
Bse118I	RCCGGY	5 cut(s)	484, 566, 620, 710, 728
Bse1I	ACTGG	1 cut(s)	679
BseDI	CCNNGG	2 cut(s)	185, 247
BseGI	GGATG	4 cut(s)	135, 294, 712, 768
BseMII	CTCAG	1 cut(s)	635
BseNI	ACTGG	1 cut(s)	679
BsePI	GCGCGC	1 cut(s)	536
BseRI	GAGGAG	1 cut(s)	623
BseXI	GCAGC	1 cut(s)	446
BseYI	CCCAGC	1 cut(s)	758
BsgI	GTGCAG	1 cut(s)	634
Bsh1236I	CGCG	6 cut(s)	207, 394, 482, 500, 536, 538
BshFI	GGCC	5 cut(s)	8, 191, 252, 372, 563
BshNI	GGYRCC	1 cut(s)	446
BshTI	ACCGGT	1 cut(s)	620
BsiHKAI	GWGCWC	1 cut(s)	480
BsiSI	CCGG	7 cut(s)	377, 485, 567, 621, 711, 716, 729
BsiWI	CGTACG	1 cut(s)	531
BslFI	GGGAC	2 cut(s)	305, 454
BsmAI	GTCTC	3 cut(s)	28, 407, 587
BsmBI	CGTCTC	2 cut(s)	28, 587
BsmFI	GGGAC	2 cut(s)	305, 454
BsnI	GGCC	5 cut(s)	8, 191, 252, 372, 563
Bso31I	GGTCTC	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	480
Bsp143I	GATC	2 cut(s)	291, 660
Bsp1720I	GCTNAGC	1 cut(s)	644
BspANI	GGCC	5 cut(s)	8, 191, 252, 372, 563
BspCNI	CTCAG	1 cut(s)	636
BspFNI	CGCG	6 cut(s)	207, 394, 482, 500, 536, 538
BspLI	GGNNCC	2 cut(s)	355, 448
BspT107I	GGYRCC	1 cut(s)	446
BspTNI	GGTCTC	1 cut(s)	407
BsrFI	RCCGGY	5 cut(s)	484, 566, 620, 710, 728
BsrI	ACTGG	1 cut(s)	679
BssAI	RCCGGY	5 cut(s)	484, 566, 620, 710, 728
BssECI	CCNNGG	2 cut(s)	185, 247
BssHII	GCGCGC	1 cut(s)	536
BssMI	GATC	2 cut(s)	291, 660
BssNI	GRCGYC	2 cut(s)	380, 447
BstACI	GRCGYC	2 cut(s)	380, 447
BstC8I	GCNNGC	2 cut(s)	480, 538
BstDEI	CTNAG	1 cut(s)	644
BstDSI	CCRYGG	2 cut(s)	185, 247
BstF5I	GGATG	4 cut(s)	135, 294, 712, 768
BstFNI	CGCG	6 cut(s)	207, 394, 482, 500, 536, 538
BstH2I	RGCGCY	1 cut(s)	450
BstHHI	GCGC	7 cut(s)	209, 396, 449, 484, 500, 538, 540
BstKTI	GATC	2 cut(s)	294, 663
BstMAI	GTCTC	3 cut(s)	28, 407, 587
BstMBI	GATC	2 cut(s)	291, 660
BstMWI	GCNNNNNNNGC	7 cut(s)	215, 488, 497, 509, 521, 612, 755
BstSCI	CCNGG	1 cut(s)	375
BstUI	CGCG	6 cut(s)	207, 394, 482, 500, 536, 538
BstV1I	GCAGC	1 cut(s)	446
BsuRI	GGCC	5 cut(s)	8, 191, 252, 372, 563
BtgI	CCRYGG	2 cut(s)	185, 247
BtsCI	GGATG	4 cut(s)	135, 294, 712, 768
Cac8I	GCNNGC	2 cut(s)	480, 538
CfoI	GCGC	7 cut(s)	209, 396, 449, 484, 500, 538, 540
Cfr10I	RCCGGY	5 cut(s)	484, 566, 620, 710, 728
Cfr13I	GGNCC	3 cut(s)	189, 618, 713
CpoI	CGGWCCG	1 cut(s)	713
CseI	GACGC	1 cut(s)	369
Csp6I	GTAC	5 cut(s)	307, 340, 427, 532, 577
CspAI	ACCGGT	1 cut(s)	620
CspI	CGGWCCG	1 cut(s)	713
CviQI	GTAC	5 cut(s)	307, 340, 427, 532, 577
DdeI	CTNAG	1 cut(s)	644
DinI	GGCGCC	1 cut(s)	448
DpnI	GATC	2 cut(s)	293, 662
DpnII	GATC	2 cut(s)	291, 660
EaeI	YGGCCR	2 cut(s)	6, 561
EciI	GGCGGA	2 cut(s)	202, 539
Eco31I	GGTCTC	1 cut(s)	407
Eco47I	GGWCC	2 cut(s)	618, 713
Eco57I	CTGAAG	1 cut(s)	532
EgeI	GGCGCC	1 cut(s)	448
EheI	GGCGCC	1 cut(s)	448
Esp3I	CGTCTC	2 cut(s)	28, 587
FaiI	YATR	2 cut(s)	687, 747
FaqI	GGGAC	2 cut(s)	305, 454
FauI	CCCGC	4 cut(s)	148, 307, 496, 588
FbaI	TGATCA	1 cut(s)	660
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	9 cut(s)	6, 216, 219, 370, 445, 460, 463, 501, 513
FokI	GGATG	4 cut(s)	122, 281, 719, 775
Fsp4HI	GCNGC	9 cut(s)	6, 216, 219, 370, 445, 460, 463, 501, 513
FspBI	CTAG	2 cut(s)	36, 750
GlaI	GCGC	7 cut(s)	208, 395, 448, 483, 499, 537, 539
GluI	GCNGC	9 cut(s)	6, 216, 219, 370, 445, 460, 463, 501, 513
GsaI	CCCAGC	1 cut(s)	762
HaeII	RGCGCY	1 cut(s)	450
HaeIII	GGCC	5 cut(s)	8, 191, 252, 372, 563
HapII	CCGG	7 cut(s)	377, 485, 567, 621, 711, 716, 729
HgaI	GACGC	1 cut(s)	369
HhaI	GCGC	7 cut(s)	209, 396, 449, 484, 500, 538, 540
Hin1I	GRCGYC	2 cut(s)	380, 447
Hin6I	GCGC	7 cut(s)	207, 394, 447, 482, 498, 536, 538
HinP1I	GCGC	7 cut(s)	207, 394, 447, 482, 498, 536, 538
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HinfI	GANTC	3 cut(s)	527, 587, 766
HpaII	CCGG	7 cut(s)	377, 485, 567, 621, 711, 716, 729
HphI	GGTGA	6 cut(s)	34, 123, 155, 304, 635, 643
Hpy166II	GTNNAC	2 cut(s)	403, 577
Hpy188I	TCNGA	4 cut(s)	337, 592, 660, 725
Hpy188III	TCNNGA	2 cut(s)	79, 550
Hpy8I	GTNNAC	2 cut(s)	403, 577
Hpy99I	CGWCG	3 cut(s)	266, 269, 404
HpyAV	CCTTC	3 cut(s)	170, 205, 253
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	1 cut(s)	615
HpyF10VI	GCNNNNNNNGC	7 cut(s)	215, 488, 497, 509, 521, 612, 755
HpyF3I	CTNAG	1 cut(s)	644
HpySE526I	ACGT	1 cut(s)	261
Hsp92I	GRCGYC	2 cut(s)	380, 447
HspAI	GCGC	7 cut(s)	207, 394, 447, 482, 498, 536, 538
KasI	GGCGCC	1 cut(s)	446
Ksp22I	TGATCA	1 cut(s)	660
Kzo9I	GATC	2 cut(s)	291, 660
LmnI	GCTCC	1 cut(s)	359
Lsp1109I	GCAGC	1 cut(s)	446
LweI	GCATC	2 cut(s)	549, 697
MaeI	CTAG	2 cut(s)	36, 750
MaeII	ACGT	1 cut(s)	261
MalI	GATC	2 cut(s)	293, 662
MboI	GATC	2 cut(s)	291, 660
MboII	GAAGA	2 cut(s)	535, 538
MhlI	GDGCHC	1 cut(s)	480
MlsI	TGGCCA	1 cut(s)	563
MluCI	AATT	1 cut(s)	98
MluNI	TGGCCA	1 cut(s)	563
Mly113I	GGCGCC	1 cut(s)	447
MlyI	GAGTC	1 cut(s)	536
MmeI	TCCRAC	1 cut(s)	351
Mox20I	TGGCCA	1 cut(s)	563
MscI	TGGCCA	1 cut(s)	563
Msp20I	TGGCCA	1 cut(s)	563
MspA1I	CMGCKG	1 cut(s)	583
MspI	CCGG	7 cut(s)	377, 485, 567, 621, 711, 716, 729
MspR9I	CCNGG	1 cut(s)	377
MvnI	CGCG	6 cut(s)	207, 394, 482, 500, 536, 538
MwoI	GCNNNNNNNGC	7 cut(s)	215, 488, 497, 509, 521, 612, 755
NarI	GGCGCC	1 cut(s)	447
NciI	CCSGG	1 cut(s)	377
NdeII	GATC	2 cut(s)	291, 660
NlaIV	GGNNCC	2 cut(s)	355, 448
NmeAIII	GCCGAG	3 cut(s)	328, 330, 474
PauI	GCGCGC	1 cut(s)	536
PcsI	WCGNNNNNNNCGW	2 cut(s)	267, 408
PfeI	GAWTC	2 cut(s)	587, 766
Pfl23II	CGTACG	1 cut(s)	531
PflFI	GACNNNGTC	1 cut(s)	418
PinAI	ACCGGT	1 cut(s)	620
PkrI	GCNGC	9 cut(s)	7, 217, 220, 371, 446, 461, 464, 502, 514
PleI	GAGTC	1 cut(s)	535
PluTI	GGCGCC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	535
PspFI	CCCAGC	1 cut(s)	758
PspLI	CGTACG	1 cut(s)	531
PspN4I	GGNNCC	2 cut(s)	355, 448
PspPI	GGNCC	3 cut(s)	189, 618, 713
PsyI	GACNNNGTC	1 cut(s)	418
PteI	GCGCGC	1 cut(s)	536
RsaI	GTAC	5 cut(s)	308, 341, 428, 533, 578
RsaNI	GTAC	5 cut(s)	307, 340, 427, 532, 577
Rsr2I	CGGWCCG	1 cut(s)	713
RsrII	CGGWCCG	1 cut(s)	713
SalI	GTCGAC	1 cut(s)	401
SatI	GCNGC	9 cut(s)	6, 216, 219, 370, 445, 460, 463, 501, 513
Sau3AI	GATC	2 cut(s)	291, 660
Sau96I	GGNCC	3 cut(s)	189, 618, 713
ScaI	AGTACT	1 cut(s)	428
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	480
SfaNI	GCATC	2 cut(s)	549, 697
SfoI	GGCGCC	1 cut(s)	448
SgrAI	CRCCGGYG	2 cut(s)	484, 566
SinI	GGWCC	2 cut(s)	618, 713
Sse9I	AATT	1 cut(s)	98
SspDI	GGCGCC	1 cut(s)	446
SspMI	CTAG	2 cut(s)	36, 750
StyD4I	CCNGG	1 cut(s)	375
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	3 cut(s)	80, 279, 402
TasI	AATT	1 cut(s)	98
TatI	WGTACW	1 cut(s)	426
TauI	GCSGC	8 cut(s)	8, 218, 221, 372, 447, 465, 503, 515
TfiI	GAWTC	2 cut(s)	587, 766
TseI	GCWGC	1 cut(s)	459
TspGWI	ACGGA	1 cut(s)	10
Tth111I	GACNNNGTC	1 cut(s)	418
VpaK11BI	GGWCC	2 cut(s)	618, 713
XapI	RAATTY	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	402
XspI	CTAG	2 cut(s)	36, 750
ZrmI	AGTACT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.