Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0012022

Physical Location & Seq

Genomic Coordinates Forward (+)

8084501 .. 8085624

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G066300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCCGCCATCTCACTCTCTCTCTCTCCAAACCCTAGCTTCACGACCACCACCACCCACAAGCCTTCCCACGCCCTCTCTACCCCCACCTTTCTCAAATTCCCAACCGTATCCCCATCCACCATCAAATCCCTTACCTACGCGCCCCTACCCCAAACCCCAACCCCACGCGCCACCTTCTCCACACGCGCCGCCGCATCCCCAACCCCATCCACCACATTCCACGGCCTCTGCTATGTCCTCGACGATAACATCGACACCGATCAGATCATCCCCGCCGAGTACCTGACCCTAGTCCCCTCCAACCCCTCTGAGTATGAGAAGCTCGGATCCTACGCGCTCTGCGGTCTCCCGGACGCCCACTCCACGCGCTTCGTGGACCCGGGCAAGACCAAGTCCAAGTACTCGATCATAATCGCGGGCGCGAACTTTGGGTGCGGGTCATCGCGCGAGCACGCGCCAGTGGCCCTAGGGGCGGCGGGCGTTGCTGCGGTAGTGGTGGAATCCTACGCGCGCATCTTCTTCAGGAACTCGGTGGCGACTGGCGAGGTGTACCCGCTGGAGTCGGAGGTTAGGGTTTGCGAGGAGTGCAAGACTGGGGATGTGGTGAGCATCGAGCTGAGCGAGAGCCGTCTGATCAATCACACGACTGGGAAAGAGTACACGTTGAAGCCCATTGGGGATGCAGGCCCTGTTATTAGGGCTGGTGGGATTTTTGCTTATGCTAGAGAAGCTGGAATGATTCCCACCTTGACTTCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003861 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0016829 GO:0016835 GO:0016836 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0048229 GO:0048856 GO:0050896 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase_C

Protein Analysis

255

Amino Acids

26.89

Weight (kDa)

6.3

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43090 AT2G43090
fragaria_vesca	FvH4_5g19250 FvH4_5g19250
malus_domestica	MD04G1062100.v1.1 MD06G1055800.v1.1
prunus_persica	Prupe.5G066300_v2.0.a1
pyrus_communis	pycom04g05570 pycom06g04670
rosa_laevigata	RLG00000003506
rosa_multiflora	Rmu_sc0000876.1_g000034 Rmu_sc0001714.1_g000009
rosa_roxburghii	Rroxscaffold_3G00253550
rosa_rugosa	Rorug07G0078900
rosa_samantha	Rh7AG208600 Rh7BG207400 Rh7CG220600 Rh7DG215400
rosa_wichuraiana	Rw7G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	324, 337
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	508
AcyI	GRCGYC	1 cut(s)	357
AfaI	GTAC	4 cut(s)	284, 404, 554, 662
AfiI	CCNNNNNNNGG	1 cut(s)	475
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	1 cut(s)	670
AluBI	AGCT	4 cut(s)	39, 325, 619, 734
AluI	AGCT	4 cut(s)	39, 325, 619, 734
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	1 cut(s)	353
AlwI	GGATC	2 cut(s)	324, 337
AlwNI	CAGNNNCTG	1 cut(s)	692
Ama87I	CYCGRG	1 cut(s)	382
AoxI	GGCC	4 cut(s)	3, 226, 465, 688
ApeKI	GCWGC	1 cut(s)	488
ApoI	RAATTY	1 cut(s)	98
AspA2I	CCTAGG	1 cut(s)	469
AspS9I	GGNCC	3 cut(s)	379, 466, 689
AsuC2I	CCSGG	3 cut(s)	353, 383, 384
AsuHPI	GGTGA	1 cut(s)	619
AvaI	CYCGRG	1 cut(s)	382
AvaII	GGWCC	1 cut(s)	379
AvrII	CCTAGG	1 cut(s)	469
BamHI	GGATCC	1 cut(s)	329
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	1 cut(s)	475
BccI	CCATC	4 cut(s)	17, 124, 131, 217
BceAI	ACGGC	2 cut(s)	241, 615
BciVI	GTATCC	1 cut(s)	121
BclI	TGATCA	1 cut(s)	636
BcnI	CCSGG	3 cut(s)	353, 383, 384
BcoDI	GTCTC	1 cut(s)	353
BfaI	CTAG	4 cut(s)	36, 293, 470, 726
BfuI	GTATCC	1 cut(s)	121
BglI	GCCNNNNNGGC	1 cut(s)	473
BisI	GCNGC	5 cut(s)	6, 192, 195, 477, 489
BlnI	CCTAGG	1 cut(s)	469
BlpI	GCTNAGC	1 cut(s)	620
BlsI	GCNGC	5 cut(s)	7, 193, 196, 478, 490
BmcAI	AGTACT	1 cut(s)	404
Bme1390I	CCNGG	3 cut(s)	353, 383, 384
Bme18I	GGWCC	1 cut(s)	379
BmeT110I	CYCGRG	1 cut(s)	382
BmgT120I	GGNCC	3 cut(s)	379, 466, 689
BmiI	GGNNCC	2 cut(s)	331, 381
BmrFI	CCNGG	3 cut(s)	353, 383, 384
BmrI	ACTGGG	2 cut(s)	606, 660
BmsI	GCATC	4 cut(s)	206, 525, 621, 673
BmuI	ACTGGG	2 cut(s)	606, 660
BoxI	GACNNNNGTC	1 cut(s)	293
BpmI	CTGGAG	1 cut(s)	581
Bpu1102I	GCTNAGC	1 cut(s)	620
BpuMI	CCSGG	3 cut(s)	353, 383, 384
BsaBI	GATNNNNATC	1 cut(s)	413
BsaHI	GRCGYC	1 cut(s)	357
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	3 cut(s)	223, 382, 469
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	475
Bse1I	ACTGG	4 cut(s)	461, 547, 601, 655
Bse8I	GATNNNNATC	1 cut(s)	413
BseDI	CCNNGG	3 cut(s)	223, 382, 469
BseGI	GGATG	6 cut(s)	116, 197, 209, 270, 607, 688
BseJI	GATNNNNATC	1 cut(s)	413
BseLI	CCNNNNNNNGG	1 cut(s)	475
BseMII	CTCAG	2 cut(s)	303, 611
BseNI	ACTGG	4 cut(s)	461, 547, 601, 655
BsePI	GCGCGC	1 cut(s)	512
BseRI	GAGGAG	1 cut(s)	599
BseXI	GCAGC	1 cut(s)	475
BshFI	GGCC	4 cut(s)	5, 228, 467, 690
BsiHKAI	GWGCWC	1 cut(s)	456
BsiHKCI	CYCGRG	1 cut(s)	382
BsiSI	CCGG	2 cut(s)	353, 383
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	475
BsmAI	GTCTC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	4 cut(s)	5, 228, 467, 690
Bso31I	GGTCTC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	456
Bsp143I	GATC	5 cut(s)	262, 267, 329, 408, 636
Bsp1720I	GCTNAGC	1 cut(s)	620
BspANI	GGCC	4 cut(s)	5, 228, 467, 690
BspCNI	CTCAG	2 cut(s)	304, 612
BspLI	GGNNCC	2 cut(s)	331, 381
BspPI	GGATC	2 cut(s)	324, 337
BspTNI	GGTCTC	1 cut(s)	353
BsrI	ACTGG	4 cut(s)	461, 547, 601, 655
BssECI	CCNNGG	3 cut(s)	223, 382, 469
BssHII	GCGCGC	1 cut(s)	512
BssMI	GATC	5 cut(s)	262, 267, 329, 408, 636
BssNI	GRCGYC	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	469
Bst4CI	ACNGT	1 cut(s)	109
BstACI	GRCGYC	1 cut(s)	357
BstC8I	GCNNGC	6 cut(s)	421, 452, 456, 481, 514, 688
BstDEI	CTNAG	3 cut(s)	312, 620, 762
BstDSI	CCRYGG	1 cut(s)	223
BstF5I	GGATG	6 cut(s)	116, 197, 209, 270, 607, 688
BstKTI	GATC	5 cut(s)	265, 270, 332, 411, 639
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	5 cut(s)	262, 267, 329, 408, 636
BstMWI	GCNNNNNNNGC	5 cut(s)	464, 473, 485, 588, 731
BstPAI	GACNNNNGTC	1 cut(s)	293
BstSCI	CCNGG	3 cut(s)	351, 381, 382
BstV1I	GCAGC	1 cut(s)	475
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuI	GTATCC	1 cut(s)	121
BsuRI	GGCC	4 cut(s)	5, 228, 467, 690
BtgI	CCRYGG	1 cut(s)	223
BtgZI	GCGATG	1 cut(s)	429
BtsCI	GGATG	6 cut(s)	116, 197, 209, 270, 607, 688
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	6 cut(s)	421, 452, 456, 481, 514, 688
CaiI	CAGNNNCTG	1 cut(s)	692
Cfr13I	GGNCC	3 cut(s)	379, 466, 689
Cfr9I	CCCGGG	1 cut(s)	382
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	4 cut(s)	283, 403, 553, 661
CviQI	GTAC	4 cut(s)	283, 403, 553, 661
DdeI	CTNAG	3 cut(s)	312, 620, 762
DpnI	GATC	5 cut(s)	264, 269, 331, 410, 638
DpnII	GATC	5 cut(s)	262, 267, 329, 408, 636
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	469
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	508
Eco88I	CYCGRG	1 cut(s)	382
EcoO109I	RGGNCCY	1 cut(s)	689
EcoT14I	CCWWGG	1 cut(s)	469
ErhI	CCWWGG	1 cut(s)	469
FaiI	YATR	4 cut(s)	237, 318, 413, 723
FaqI	GGGAC	1 cut(s)	281
FauI	CCCGC	5 cut(s)	283, 412, 431, 472, 564
FbaI	TGATCA	1 cut(s)	636
Fnu4HI	GCNGC	5 cut(s)	6, 192, 195, 477, 489
FokI	GGATG	6 cut(s)	103, 184, 196, 257, 614, 695
Fsp4HI	GCNGC	5 cut(s)	6, 192, 195, 477, 489
FspBI	CTAG	4 cut(s)	36, 293, 470, 726
GluI	GCNGC	5 cut(s)	6, 192, 195, 477, 489
GsuI	CTGGAG	1 cut(s)	581
HaeIII	GGCC	4 cut(s)	5, 228, 467, 690
HapII	CCGG	2 cut(s)	353, 383
HgaI	GACGC	1 cut(s)	365
Hin1I	GRCGYC	1 cut(s)	357
HinfI	GANTC	3 cut(s)	503, 563, 742
HpaII	CCGG	2 cut(s)	353, 383
HphI	GGTGA	1 cut(s)	619
Hpy166II	GTNNAC	3 cut(s)	379, 553, 663
Hpy188I	TCNGA	5 cut(s)	267, 313, 329, 568, 636
Hpy188III	TCNNGA	2 cut(s)	43, 526
Hpy8I	GTNNAC	3 cut(s)	379, 553, 663
Hpy99I	CGWCG	1 cut(s)	248
HpyAV	CCTTC	2 cut(s)	75, 187
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	665
HpyCH4V	TGCA	2 cut(s)	591, 686
HpyF10VI	GCNNNNNNNGC	5 cut(s)	464, 473, 485, 588, 731
HpyF3I	CTNAG	3 cut(s)	312, 620, 762
HpySE526I	ACGT	1 cut(s)	665
Hsp92I	GRCGYC	1 cut(s)	357
Ksp22I	TGATCA	1 cut(s)	636
Kzo9I	GATC	5 cut(s)	262, 267, 329, 408, 636
Lsp1109I	GCAGC	1 cut(s)	475
LweI	GCATC	4 cut(s)	206, 525, 621, 673
MaeI	CTAG	4 cut(s)	36, 293, 470, 726
MaeII	ACGT	1 cut(s)	665
MalI	GATC	5 cut(s)	264, 269, 331, 410, 638
MboI	GATC	5 cut(s)	262, 267, 329, 408, 636
MboII	GAAGA	3 cut(s)	511, 514, 750
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	1 cut(s)	456
MluCI	AATT	1 cut(s)	98
MlyI	GAGTC	1 cut(s)	572
MmeI	TCCRAC	2 cut(s)	327, 546
MnlI	CCTC	8 cut(s)	86, 239, 251, 310, 319, 541, 562, 577
MspA1I	CMGCKG	1 cut(s)	559
MspI	CCGG	2 cut(s)	353, 383
MspR9I	CCNGG	3 cut(s)	353, 383, 384
MwoI	GCNNNNNNNGC	5 cut(s)	464, 473, 485, 588, 731
NciI	CCSGG	3 cut(s)	353, 383, 384
NdeII	GATC	5 cut(s)	262, 267, 329, 408, 636
NlaIV	GGNNCC	2 cut(s)	331, 381
NmeAIII	GCCGAG	1 cut(s)	304
PauI	GCGCGC	1 cut(s)	512
PcsI	WCGNNNNNNNCGW	2 cut(s)	252, 621
PfeI	GAWTC	2 cut(s)	503, 742
PflFI	GACNNNGTC	1 cut(s)	394
PfoI	TCCNGGA	1 cut(s)	351
PkrI	GCNGC	5 cut(s)	7, 193, 196, 478, 490
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
PshAI	GACNNNNGTC	1 cut(s)	293
PspN4I	GGNNCC	2 cut(s)	331, 381
PspPI	GGNCC	3 cut(s)	379, 466, 689
PstNI	CAGNNNCTG	1 cut(s)	692
PsuI	RGATCY	1 cut(s)	329
PsyI	GACNNNGTC	1 cut(s)	394
PteI	GCGCGC	1 cut(s)	512
RsaI	GTAC	4 cut(s)	284, 404, 554, 662
RsaNI	GTAC	4 cut(s)	283, 403, 553, 661
SatI	GCNGC	5 cut(s)	6, 192, 195, 477, 489
Sau3AI	GATC	5 cut(s)	262, 267, 329, 408, 636
Sau96I	GGNCC	3 cut(s)	379, 466, 689
ScaI	AGTACT	1 cut(s)	404
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	3 cut(s)	353, 383, 384
SduI	GDGCHC	1 cut(s)	456
SfaNI	GCATC	4 cut(s)	206, 525, 621, 673
SinI	GGWCC	1 cut(s)	379
SmaI	CCCGGG	1 cut(s)	384
Sse9I	AATT	1 cut(s)	98
SspMI	CTAG	4 cut(s)	36, 293, 470, 726
StyD4I	CCNGG	3 cut(s)	351, 381, 382
StyI	CCWWGG	1 cut(s)	469
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	668
TaqI	TCGA	4 cut(s)	243, 255, 407, 615
TasI	AATT	1 cut(s)	98
TatI	WGTACW	2 cut(s)	402, 660
TauI	GCSGC	4 cut(s)	8, 194, 197, 479
TfiI	GAWTC	2 cut(s)	503, 742
TscAI	CASTG	1 cut(s)	468
TseI	GCWGC	1 cut(s)	488
TspMI	CCCGGG	1 cut(s)	382
TspRI	CASTG	1 cut(s)	468
Tth111I	GACNNNGTC	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	379
XapI	RAATTY	1 cut(s)	98
XcmI	CCANNNNNNNNNTGG	1 cut(s)	373
XmaI	CCCGGG	1 cut(s)	382
XmaJI	CCTAGG	1 cut(s)	469
XspI	CTAG	4 cut(s)	36, 293, 470, 726
ZrmI	AGTACT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.