Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012022

Physical Location & Seq

Genomic Coordinates Forward (+)

11106395 .. 11107882

Gene Structure 1488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g19250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCCGCCACCTCCCTCTCCGTCTCCCCAAACCCTAGCTTCACCACCACCACCACCTCTCGCAAACCCTCTCCCTCTCTCTCAACCCCAAACCACCTCAAATTCCAAACCACCGCCACCTCTCCCTTCCCCGCCAAATCCCTAACCACTCTTCACCTCTCCCAAACCACAACCCCACGCGCCGCCTTCTCCACACGCGCCGCCCCAGCCGCATTGGACGCACCCCGCACCTCATTCCACGGCCTCTGCTACGTCGTCGGCGACAACATCGACACCGATCAGATCATCCCCGCTGAGTACCTCACCCTCGTCCCTTCCAACCCCTCCGAGTACGAGAAGCTCGGCTCCTACGCGCTCTGCGGTCTCCCGGCGAGTTACTCCAAGCGCTTCGTCGAACCTAACGAGACCAAGTCCAAGTTCTCCATCGTCATCGGCGGCGCCAACTTCGGCTGCGGCTCGTCTCGCGAGCACGCGCCGGTTGCTCTCGGCGCGGCGGGAGTGGCGGCGGTGGTTGCGGAGTCGTACGCGCGCATCTTCTTCAGGAACTCGGTGGCCACTGGCGAGGTGTACCCGCTGGAATCGGAGACGAGGATTTGCGAGGAGTGCAAGACCGGTGATGTGGTGAGCATTGAGCTGAGCGAGAGCCGTCTGATCAATCACACGACTGGGAAAGAGTATGTGTTGAAGCCGATTGGGGATGCCGGTCCGGTTATCAGAGCCGGTGGGATATTTGCTTATGCTAGAGAGACTGGGATGATCCCAACTTTGTCTGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003861 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006551 GO:0006790 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009081 GO:0009082 GO:0009098 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009651 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0016053 GO:0016143 GO:0016144 GO:0016829 GO:0016835 GO:0016836 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044550 GO:0046394 GO:0048229 GO:0048856 GO:0050896 GO:0071704 GO:0071840 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1901657 GO:1901659

KEGG Pathways

Metabolic & Signaling

ko00290 ko00660 ko00966 ko01100 ko01110 ko01210 ko01230 map00290 map00660 map00966 map01100 map01110 map01210 map01230

Pfam Domains

Protein Families

Aconitase_C

Protein Analysis

259

Amino Acids

27.26

Weight (kDa)

6.96

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aconitase_C	PF00694	141 - 187	2.2e-17	Aconitase C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012022)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43090 AT2G43090
fragaria_vesca	FvH4_5g19250 FvH4_5g19250
malus_domestica	MD04G1062100.v1.1 MD06G1055800.v1.1
prunus_persica	Prupe.5G066300_v2.0.a1
pyrus_communis	pycom04g05570 pycom06g04670
rosa_laevigata	RLG00000003506
rosa_multiflora	Rmu_sc0000876.1_g000034 Rmu_sc0001714.1_g000009
rosa_roxburghii	Rroxscaffold_3G00253550
rosa_rugosa	Rorug07G0078900
rosa_samantha	Rh7AG208600 Rh7BG207400 Rh7CG220600 Rh7DG215400
rosa_wichuraiana	Rw7G018160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	437
AccII	CGCG	8 cut(s)	180, 198, 353, 465, 473, 491, 527, 529
AclWI	GGATC	1 cut(s)	751
AcoI	YGGCCR	2 cut(s)	3, 552
AcsI	RAATTY	1 cut(s)	101
AcuI	CTGAAG	1 cut(s)	523
AcyI	GRCGYC	1 cut(s)	438
AfaI	GTAC	4 cut(s)	299, 332, 524, 569
AfeI	AGCGCT	1 cut(s)	386
AgeI	ACCGGT	1 cut(s)	611
AgsI	TTSAA	1 cut(s)	685
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
AluBI	AGCT	3 cut(s)	39, 340, 634
AluI	AGCT	3 cut(s)	39, 340, 634
Alw21I	GWGCWC	1 cut(s)	471
Alw26I	GTCTC	6 cut(s)	28, 368, 398, 465, 578, 740
AlwI	GGATC	1 cut(s)	751
Aor51HI	AGCGCT	1 cut(s)	386
AoxI	GGCC	3 cut(s)	3, 241, 552
ApeKI	GCWGC	1 cut(s)	450
ApoI	RAATTY	1 cut(s)	101
AsiGI	ACCGGT	1 cut(s)	611
AspLEI	GCGC	9 cut(s)	182, 200, 355, 387, 440, 475, 491, 529, 531
AspS9I	GGNCC	1 cut(s)	704
AsuC2I	CCSGG	1 cut(s)	368
AsuHPI	GGTGA	5 cut(s)	34, 146, 295, 626, 634
AvaII	GGWCC	1 cut(s)	704
BalI	TGGCCA	1 cut(s)	554
BanI	GGYRCC	1 cut(s)	437
Bbv12I	GWGCWC	1 cut(s)	471
BbvI	GCAGC	1 cut(s)	437
BccI	CCATC	1 cut(s)	431
BceAI	ACGGC	2 cut(s)	256, 630
BclI	TGATCA	1 cut(s)	651
BcnI	CCSGG	1 cut(s)	368
BcoDI	GTCTC	6 cut(s)	28, 368, 398, 465, 578, 740
BfaI	CTAG	2 cut(s)	36, 741
BfoI	RGCGCY	2 cut(s)	388, 441
BisI	GCNGC	9 cut(s)	6, 183, 201, 210, 436, 451, 454, 492, 504
BlpI	GCTNAGC	1 cut(s)	635
BlsI	GCNGC	9 cut(s)	7, 184, 202, 211, 437, 452, 455, 493, 505
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	1 cut(s)	704
BmgT120I	GGNCC	1 cut(s)	704
BmiI	GGNNCC	2 cut(s)	346, 439
BmrFI	CCNGG	1 cut(s)	368
BmrI	ACTGGG	2 cut(s)	675, 759
BmsI	GCATC	2 cut(s)	540, 688
BmuI	ACTGGG	2 cut(s)	675, 759
Bpu1102I	GCTNAGC	1 cut(s)	635
BpuMI	CCSGG	1 cut(s)	368
BsaHI	GRCGYC	1 cut(s)	438
BsaI	GGTCTC	2 cut(s)	368, 398
BsaJI	CCNNGG	1 cut(s)	238
BsaWI	WCCGGW	2 cut(s)	611, 706
Bse118I	RCCGGY	4 cut(s)	475, 611, 701, 719
Bse1I	ACTGG	3 cut(s)	562, 670, 754
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	3 cut(s)	285, 703, 759
BseMII	CTCAG	2 cut(s)	285, 626
BseNI	ACTGG	3 cut(s)	562, 670, 754
BsePI	GCGCGC	1 cut(s)	527
BseRI	GAGGAG	1 cut(s)	614
BseXI	GCAGC	1 cut(s)	437
BseYI	CCCAGC	1 cut(s)	205
Bsh1236I	CGCG	8 cut(s)	180, 198, 353, 465, 473, 491, 527, 529
BshFI	GGCC	3 cut(s)	5, 243, 554
BshNI	GGYRCC	1 cut(s)	437
BshTI	ACCGGT	1 cut(s)	611
BsiHKAI	GWGCWC	1 cut(s)	471
BsiSI	CCGG	6 cut(s)	368, 476, 612, 702, 707, 720
BsiWI	CGTACG	1 cut(s)	522
BslFI	GGGAC	1 cut(s)	296
BsmAI	GTCTC	6 cut(s)	28, 368, 398, 465, 578, 740
BsmBI	CGTCTC	3 cut(s)	28, 465, 578
BsmFI	GGGAC	1 cut(s)	296
BsnI	GGCC	3 cut(s)	5, 243, 554
Bso31I	GGTCTC	2 cut(s)	368, 398
Bsp1286I	GDGCHC	1 cut(s)	471
Bsp143I	GATC	4 cut(s)	277, 282, 651, 756
Bsp1720I	GCTNAGC	1 cut(s)	635
Bsp68I	TCGCGA	1 cut(s)	465
BspANI	GGCC	3 cut(s)	5, 243, 554
BspCNI	CTCAG	2 cut(s)	286, 627
BspFNI	CGCG	8 cut(s)	180, 198, 353, 465, 473, 491, 527, 529
BspLI	GGNNCC	2 cut(s)	346, 439
BspPI	GGATC	1 cut(s)	751
BspT107I	GGYRCC	1 cut(s)	437
BspTNI	GGTCTC	2 cut(s)	368, 398
BsrFI	RCCGGY	4 cut(s)	475, 611, 701, 719
BsrI	ACTGG	3 cut(s)	562, 670, 754
BssAI	RCCGGY	4 cut(s)	475, 611, 701, 719
BssECI	CCNNGG	1 cut(s)	238
BssHII	GCGCGC	1 cut(s)	527
BssMI	GATC	4 cut(s)	277, 282, 651, 756
BssNI	GRCGYC	1 cut(s)	438
Bst6I	CTCTTC	1 cut(s)	156
BstACI	GRCGYC	1 cut(s)	438
BstC8I	GCNNGC	3 cut(s)	467, 471, 529
BstDEI	CTNAG	2 cut(s)	294, 635
BstDSI	CCRYGG	1 cut(s)	238
BstF5I	GGATG	3 cut(s)	285, 703, 759
BstFNI	CGCG	8 cut(s)	180, 198, 353, 465, 473, 491, 527, 529
BstH2I	RGCGCY	2 cut(s)	388, 441
BstHHI	GCGC	9 cut(s)	182, 200, 355, 387, 440, 475, 491, 529, 531
BstKTI	GATC	4 cut(s)	280, 285, 654, 759
BstMAI	GTCTC	6 cut(s)	28, 368, 398, 465, 578, 740
BstMBI	GATC	4 cut(s)	277, 282, 651, 756
BstMWI	GCNNNNNNNGC	9 cut(s)	206, 209, 218, 462, 479, 488, 500, 512, 603
BstSCI	CCNGG	1 cut(s)	366
BstUI	CGCG	8 cut(s)	180, 198, 353, 465, 473, 491, 527, 529
BstV1I	GCAGC	1 cut(s)	437
BsuRI	GGCC	3 cut(s)	5, 243, 554
BtgI	CCRYGG	1 cut(s)	238
BtsCI	GGATG	3 cut(s)	285, 703, 759
BtsIMutI	CAGTG	1 cut(s)	555
BtuMI	TCGCGA	1 cut(s)	465
Cac8I	GCNNGC	3 cut(s)	467, 471, 529
CfoI	GCGC	9 cut(s)	182, 200, 355, 387, 440, 475, 491, 529, 531
Cfr10I	RCCGGY	4 cut(s)	475, 611, 701, 719
Cfr13I	GGNCC	1 cut(s)	704
CpoI	CGGWCCG	1 cut(s)	704
CseI	GACGC	1 cut(s)	227
Csp6I	GTAC	4 cut(s)	298, 331, 523, 568
CspAI	ACCGGT	1 cut(s)	611
CspI	CGGWCCG	1 cut(s)	704
CviQI	GTAC	4 cut(s)	298, 331, 523, 568
DdeI	CTNAG	2 cut(s)	294, 635
DinI	GGCGCC	1 cut(s)	439
DpnI	GATC	4 cut(s)	279, 284, 653, 758
DpnII	GATC	4 cut(s)	277, 282, 651, 756
EaeI	YGGCCR	2 cut(s)	3, 552
Eam1104I	CTCTTC	1 cut(s)	156
EarI	CTCTTC	1 cut(s)	156
Eco31I	GGTCTC	2 cut(s)	368, 398
Eco47I	GGWCC	1 cut(s)	704
Eco47III	AGCGCT	1 cut(s)	386
Eco57I	CTGAAG	1 cut(s)	523
EgeI	GGCGCC	1 cut(s)	439
EheI	GGCGCC	1 cut(s)	439
Esp3I	CGTCTC	3 cut(s)	28, 465, 578
FaiI	YATR	2 cut(s)	678, 738
FaqI	GGGAC	1 cut(s)	296
FauI	CCCGC	5 cut(s)	139, 233, 298, 487, 579
FbaI	TGATCA	1 cut(s)	651
Fnu4HI	GCNGC	9 cut(s)	6, 183, 201, 210, 436, 451, 454, 492, 504
FokI	GGATG	3 cut(s)	272, 710, 766
Fsp4HI	GCNGC	9 cut(s)	6, 183, 201, 210, 436, 451, 454, 492, 504
FspBI	CTAG	2 cut(s)	36, 741
GlaI	GCGC	9 cut(s)	181, 199, 354, 386, 439, 474, 490, 528, 530
GluI	GCNGC	9 cut(s)	6, 183, 201, 210, 436, 451, 454, 492, 504
GsaI	CCCAGC	1 cut(s)	209
HaeII	RGCGCY	2 cut(s)	388, 441
HaeIII	GGCC	3 cut(s)	5, 243, 554
HapII	CCGG	6 cut(s)	368, 476, 612, 702, 707, 720
HgaI	GACGC	1 cut(s)	227
HhaI	GCGC	9 cut(s)	182, 200, 355, 387, 440, 475, 491, 529, 531
Hin1I	GRCGYC	1 cut(s)	438
Hin6I	GCGC	9 cut(s)	180, 198, 353, 385, 438, 473, 489, 527, 529
HinP1I	GCGC	9 cut(s)	180, 198, 353, 385, 438, 473, 489, 527, 529
HinfI	GANTC	2 cut(s)	518, 578
HpaII	CCGG	6 cut(s)	368, 476, 612, 702, 707, 720
HphI	GGTGA	5 cut(s)	34, 146, 295, 626, 634
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188I	TCNGA	5 cut(s)	282, 328, 583, 651, 716
Hpy188III	TCNNGA	2 cut(s)	464, 541
Hpy8I	GTNNAC	1 cut(s)	568
Hpy99I	CGWCG	3 cut(s)	257, 260, 395
HpyAV	CCTTC	3 cut(s)	136, 196, 324
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	1 cut(s)	606
HpyF10VI	GCNNNNNNNGC	9 cut(s)	206, 209, 218, 462, 479, 488, 500, 512, 603
HpyF3I	CTNAG	2 cut(s)	294, 635
HpySE526I	ACGT	1 cut(s)	252
Hsp92I	GRCGYC	1 cut(s)	438
HspAI	GCGC	9 cut(s)	180, 198, 353, 385, 438, 473, 489, 527, 529
KasI	GGCGCC	1 cut(s)	437
Ksp22I	TGATCA	1 cut(s)	651
Kzo9I	GATC	4 cut(s)	277, 282, 651, 756
LmnI	GCTCC	1 cut(s)	350
Lsp1109I	GCAGC	1 cut(s)	437
LweI	GCATC	2 cut(s)	540, 688
MaeI	CTAG	2 cut(s)	36, 741
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	4 cut(s)	279, 284, 653, 758
MboI	GATC	4 cut(s)	277, 282, 651, 756
MboII	GAAGA	3 cut(s)	143, 526, 529
MhlI	GDGCHC	1 cut(s)	471
MlsI	TGGCCA	1 cut(s)	554
MluCI	AATT	1 cut(s)	101
MluNI	TGGCCA	1 cut(s)	554
Mly113I	GGCGCC	1 cut(s)	438
MlyI	GAGTC	1 cut(s)	527
MmeI	TCCRAC	1 cut(s)	342
Mox20I	TGGCCA	1 cut(s)	554
MscI	TGGCCA	1 cut(s)	554
Msp20I	TGGCCA	1 cut(s)	554
MspA1I	CMGCKG	2 cut(s)	293, 574
MspI	CCGG	6 cut(s)	368, 476, 612, 702, 707, 720
MspR9I	CCNGG	1 cut(s)	368
MvnI	CGCG	8 cut(s)	180, 198, 353, 465, 473, 491, 527, 529
MwoI	GCNNNNNNNGC	9 cut(s)	206, 209, 218, 462, 479, 488, 500, 512, 603
NarI	GGCGCC	1 cut(s)	438
NciI	CCSGG	1 cut(s)	368
NdeII	GATC	4 cut(s)	277, 282, 651, 756
NlaIV	GGNNCC	2 cut(s)	346, 439
NmeAIII	GCCGAG	2 cut(s)	321, 465
NruI	TCGCGA	1 cut(s)	465
PauI	GCGCGC	1 cut(s)	527
PcsI	WCGNNNNNNNCGW	2 cut(s)	258, 399
PfeI	GAWTC	1 cut(s)	578
Pfl23II	CGTACG	1 cut(s)	522
PflFI	GACNNNGTC	1 cut(s)	409
PinAI	ACCGGT	1 cut(s)	611
PkrI	GCNGC	9 cut(s)	7, 184, 202, 211, 437, 452, 455, 493, 505
PleI	GAGTC	1 cut(s)	526
PluTI	GGCGCC	1 cut(s)	441
PpsI	GAGTC	1 cut(s)	526
PspFI	CCCAGC	1 cut(s)	205
PspLI	CGTACG	1 cut(s)	522
PspN4I	GGNNCC	2 cut(s)	346, 439
PspPI	GGNCC	1 cut(s)	704
PsyI	GACNNNGTC	1 cut(s)	409
PteI	GCGCGC	1 cut(s)	527
RruI	TCGCGA	1 cut(s)	465
RsaI	GTAC	4 cut(s)	299, 332, 524, 569
RsaNI	GTAC	4 cut(s)	298, 331, 523, 568
Rsr2I	CGGWCCG	1 cut(s)	704
RsrII	CGGWCCG	1 cut(s)	704
SatI	GCNGC	9 cut(s)	6, 183, 201, 210, 436, 451, 454, 492, 504
Sau3AI	GATC	4 cut(s)	277, 282, 651, 756
Sau96I	GGNCC	1 cut(s)	704
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	1 cut(s)	471
SfaNI	GCATC	2 cut(s)	540, 688
SfoI	GGCGCC	1 cut(s)	439
SinI	GGWCC	1 cut(s)	704
Sse9I	AATT	1 cut(s)	101
SspDI	GGCGCC	1 cut(s)	437
SspMI	CTAG	2 cut(s)	36, 741
StyD4I	CCNGG	1 cut(s)	366
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	2 cut(s)	270, 393
TasI	AATT	1 cut(s)	101
TauI	GCSGC	8 cut(s)	8, 185, 203, 212, 438, 456, 494, 506
TfiI	GAWTC	1 cut(s)	578
TscAI	CASTG	1 cut(s)	562
TseI	GCWGC	1 cut(s)	450
TspGWI	ACGGA	1 cut(s)	10
TspRI	CASTG	1 cut(s)	562
Tth111I	GACNNNGTC	1 cut(s)	409
VpaK11BI	GGWCC	1 cut(s)	704
XapI	RAATTY	1 cut(s)	101
XspI	CTAG	2 cut(s)	36, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.