AT2G43280

FAR1 DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0004298
Physical Location & Seq
Forward (+)
17989602 .. 17991022
1421 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G43280.2

Sequence Viewer

Length: 621 bp
ATGGAAGATGAGGATGATCCAACCACAAAGAACAGCAACAACACAGATGATTTTGCTATAGAGCCTCGTGAAGGGATTATATTTGAATCCGAGGATGCAGCTAAGATGTTCTATGATGATTACTCTAGACGATTAGGGTTTGTAATGCGTGTAATGTCTTGCCGAAGATCCGAGAAAGACGGAAGAATTCTTGCCCGGAGATTCGGTTGTAACAAAGAAGGTCATTGTGTTAGTATTCGTGGTAAGTTTGGATCAGTTAGGAAACCTAGACCGAGTACAAGAGAAGGTTGCAAAGCTATGATTCATGTTAAGTATGACCGGTCTGGCAAATGGGTCATTACCAAATTCGTCAAAGAACATAACCATCCACTCGTTGTTTCACCTCGCGAGGCTCGCCATACCCTGGACGAGAAGGATAAGAGAATTCAAGAACTGACGATAGAGCTGCGAAACAAGAAGCGGTTATGTGCAGCGTACAAGGAACAGTTAGATGCTTTTGCAAAGATTGTTGAAGAGCATAGTAATCAGATAGCAAAGAAAGTTGAGAATGTAGTGAACAATTTGAAGGAGTTCGAACATCTAGAGCATGCGCTATTGCGAAGTAAACAAGATGCCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

206

Amino Acids

24.02

Weight (kDa)

9.03

Isoelectric Point (pI)

56.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 2 - 90 7.3e-29 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 403
AccII CGCG 1 cut(s) 387
AciI CCGC 1 cut(s) 460
AclWI GGATC 3 cut(s) 11, 162, 259
AcsI RAATTY 3 cut(s) 186, 344, 423
AfaI GTAC 2 cut(s) 277, 476
AfiI CCNNNNNNNGG 2 cut(s) 71, 403
AgeI ACCGGT 1 cut(s) 318
AgsI TTSAA 4 cut(s) 86, 428, 512, 565
AjnI CCWGG 1 cut(s) 402
AluBI AGCT 3 cut(s) 101, 296, 445
AluI AGCT 3 cut(s) 101, 296, 445
AlwI GGATC 3 cut(s) 11, 162, 259
ApeKI GCWGC 3 cut(s) 98, 445, 470
ApoI RAATTY 3 cut(s) 186, 344, 423
AsiGI ACCGGT 1 cut(s) 318
Asp700I GAANNNNTTC 1 cut(s) 569
AspLEI GCGC 1 cut(s) 592
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 1 cut(s) 372
AsuII TTCGAA 1 cut(s) 573
BauI CACGAG 1 cut(s) 66
BbvI GCAGC 3 cut(s) 110, 432, 482
BccI CCATC 1 cut(s) 372
BcgI CGANNNNNNTGC 2 cut(s) 427, 461
BciT130I CCWGG 1 cut(s) 404
BcnI CCSGG 1 cut(s) 196
BfaI CTAG 3 cut(s) 126, 267, 581
BfmI CTRYAG 1 cut(s) 57
BisI GCNGC 3 cut(s) 99, 446, 471
BlsI GCNGC 3 cut(s) 100, 447, 472
Bme1390I CCNGG 2 cut(s) 196, 404
BmrFI CCNGG 2 cut(s) 196, 404
BmsI GCATC 3 cut(s) 85, 481, 601
Bpu14I TTCGAA 1 cut(s) 573
BpuMI CCSGG 1 cut(s) 196
BsaJI CCNNGG 2 cut(s) 90, 402
BsaWI WCCGGW 1 cut(s) 318
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 403
Bse118I RCCGGY 1 cut(s) 318
BseBI CCWGG 1 cut(s) 404
BseDI CCNNGG 2 cut(s) 90, 402
BseGI GGATG 3 cut(s) 19, 100, 364
BseLI CCNNNNNNNGG 2 cut(s) 71, 403
BseXI GCAGC 3 cut(s) 110, 432, 482
BsgI GTGCAG 1 cut(s) 489
Bsh1236I CGCG 1 cut(s) 387
BshTI ACCGGT 1 cut(s) 318
BsiSI CCGG 2 cut(s) 196, 319
BslI CCNNNNNNNGG 2 cut(s) 71, 403
Bsp119I TTCGAA 1 cut(s) 573
Bsp143I GATC 3 cut(s) 16, 167, 251
Bsp68I TCGCGA 1 cut(s) 387
BspACI CCGC 1 cut(s) 460
BspFNI CGCG 1 cut(s) 387
BspPI GGATC 3 cut(s) 11, 162, 259
BspQI GCTCTTC 1 cut(s) 507
BspT104I TTCGAA 1 cut(s) 573
BsrFI RCCGGY 1 cut(s) 318
BssAI RCCGGY 1 cut(s) 318
BssECI CCNNGG 2 cut(s) 90, 402
BssMI GATC 3 cut(s) 16, 167, 251
BssSI CACGAG 1 cut(s) 66
Bst2BI CACGAG 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 404
Bst4CI ACNGT 1 cut(s) 486
Bst6I CTCTTC 1 cut(s) 507
BstBI TTCGAA 1 cut(s) 573
BstC8I GCNNGC 2 cut(s) 394, 588
BstDEI CTNAG 1 cut(s) 102
BstENI CCTNNNNNAGG 1 cut(s) 69
BstF5I GGATG 3 cut(s) 19, 100, 364
BstFNI CGCG 1 cut(s) 387
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 3 cut(s) 19, 170, 254
BstMBI GATC 3 cut(s) 16, 167, 251
BstMWI GCNNNNNNNGC 1 cut(s) 393
BstNI CCWGG 1 cut(s) 404
BstNSI RCATGY 1 cut(s) 590
BstSCI CCNGG 2 cut(s) 194, 402
BstSFI CTRYAG 1 cut(s) 57
BstUI CGCG 1 cut(s) 387
BstV1I GCAGC 3 cut(s) 110, 432, 482
BstX2I RGATCY 1 cut(s) 167
BstYI RGATCY 1 cut(s) 167
BtsCI GGATG 3 cut(s) 19, 100, 364
BtuMI TCGCGA 1 cut(s) 387
Cac8I GCNNGC 2 cut(s) 394, 588
CfoI GCGC 1 cut(s) 592
Cfr10I RCCGGY 1 cut(s) 318
Csp6I GTAC 2 cut(s) 276, 475
CspAI ACCGGT 1 cut(s) 318
CviAII CATG 2 cut(s) 305, 587
CviJI RGCY 5 cut(s) 64, 101, 296, 392, 445
CviKI_1 RGCY 5 cut(s) 64, 101, 296, 392, 445
CviQI GTAC 2 cut(s) 276, 475
DdeI CTNAG 1 cut(s) 102
DpnI GATC 3 cut(s) 18, 169, 253
DpnII GATC 3 cut(s) 16, 167, 251
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
EcoNI CCTNNNNNAGG 1 cut(s) 69
EcoRI GAATTC 2 cut(s) 186, 423
EcoRII CCWGG 1 cut(s) 402
FaeI CATG 2 cut(s) 308, 590
FatI CATG 2 cut(s) 304, 586
Fnu4HI GCNGC 3 cut(s) 99, 446, 471
FokI GGATG 3 cut(s) 26, 107, 351
Fsp4HI GCNGC 3 cut(s) 99, 446, 471
FspBI CTAG 3 cut(s) 126, 267, 581
GlaI GCGC 1 cut(s) 591
GluI GCNGC 3 cut(s) 99, 446, 471
HapII CCGG 2 cut(s) 196, 319
HhaI GCGC 1 cut(s) 592
Hin1II CATG 2 cut(s) 308, 590
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HinfI GANTC 3 cut(s) 86, 201, 301
HpaII CCGG 2 cut(s) 196, 319
HphI GGTGA 1 cut(s) 372
Hpy166II GTNNAC 2 cut(s) 556, 605
Hpy188I TCNGA 3 cut(s) 91, 172, 528
Hpy188III TCNNGA 5 cut(s) 68, 126, 386, 428, 581
Hpy8I GTNNAC 2 cut(s) 556, 605
HpyAV CCTTC 5 cut(s) 65, 212, 278, 406, 559
HpyCH4III ACNGT 1 cut(s) 486
HpyCH4V TGCA 4 cut(s) 98, 291, 470, 500
HpyF10VI GCNNNNNNNGC 1 cut(s) 393
HpyF3I CTNAG 1 cut(s) 102
Hsp92II CATG 2 cut(s) 308, 590
HspAI GCGC 1 cut(s) 590
Kzo9I GATC 3 cut(s) 16, 167, 251
LguI GCTCTTC 1 cut(s) 507
LpnPI CCDG 5 cut(s) 209, 309, 332, 389, 416
Lsp1109I GCAGC 3 cut(s) 110, 432, 482
LweI GCATC 3 cut(s) 85, 481, 601
MaeI CTAG 3 cut(s) 126, 267, 581
MaeIII GTNAC 1 cut(s) 209
MalI GATC 3 cut(s) 18, 169, 253
MboI GATC 3 cut(s) 16, 167, 251
MboII GAAGA 4 cut(s) 17, 177, 195, 524
MflI RGATCY 1 cut(s) 167
MluCI AATT 4 cut(s) 186, 344, 423, 559
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 5 cut(s) 4, 75, 85, 382, 393
MroXI GAANNNNTTC 1 cut(s) 569
MseI TTAA 1 cut(s) 309
MspI CCGG 2 cut(s) 196, 319
MspR9I CCNGG 2 cut(s) 196, 404
MvaI CCWGG 1 cut(s) 404
MvnI CGCG 1 cut(s) 387
MwoI GCNNNNNNNGC 1 cut(s) 393
NciI CCSGG 1 cut(s) 196
NdeII GATC 3 cut(s) 16, 167, 251
NlaIII CATG 2 cut(s) 308, 590
NruI TCGCGA 1 cut(s) 387
NspI RCATGY 1 cut(s) 590
NspV TTCGAA 1 cut(s) 573
PaeI GCATGC 1 cut(s) 590
PciSI GCTCTTC 1 cut(s) 507
PdmI GAANNNNTTC 1 cut(s) 569
PfeI GAWTC 3 cut(s) 86, 201, 301
PflMI CCANNNNNTGG 1 cut(s) 403
PinAI ACCGGT 1 cut(s) 318
PkrI GCNGC 3 cut(s) 100, 447, 472
Psp6I CCWGG 1 cut(s) 402
PspGI CCWGG 1 cut(s) 402
PsuI RGATCY 1 cut(s) 167
RruI TCGCGA 1 cut(s) 387
RsaI GTAC 2 cut(s) 277, 476
RsaNI GTAC 2 cut(s) 276, 475
SapI GCTCTTC 1 cut(s) 507
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 3 cut(s) 99, 446, 471
Sau3AI GATC 3 cut(s) 16, 167, 251
ScrFI CCNGG 2 cut(s) 196, 404
SetI ASST 7 cut(s) 103, 223, 268, 289, 298, 385, 447
SfaNI GCATC 3 cut(s) 85, 481, 601
SfcI CTRYAG 1 cut(s) 57
SfuI TTCGAA 1 cut(s) 573
SphI GCATGC 1 cut(s) 590
Sse9I AATT 4 cut(s) 186, 344, 423, 559
SsiI CCGC 1 cut(s) 460
SspMI CTAG 3 cut(s) 126, 267, 581
StyD4I CCNGG 2 cut(s) 194, 402
TaaI ACNGT 1 cut(s) 486
TaqI TCGA 1 cut(s) 573
TaqII GACCGA 1 cut(s) 286
TasI AATT 4 cut(s) 186, 344, 423, 559
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 3 cut(s) 86, 201, 301
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TseI GCWGC 3 cut(s) 98, 445, 470
TspDTI ATGAA 1 cut(s) 293
TspGWI ACGGA 1 cut(s) 195
Van91I CCANNNNNTGG 1 cut(s) 403
XagI CCTNNNNNAGG 1 cut(s) 69
XapI RAATTY 3 cut(s) 186, 344, 423
XbaI TCTAGA 2 cut(s) 125, 580
XceI RCATGY 1 cut(s) 590
XmnI GAANNNNTTC 1 cut(s) 569
XspI CTAG 3 cut(s) 126, 267, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.