Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004298

Physical Location & Seq

Genomic Coordinates Reverse (-)

18661783 .. 18665653

Gene Structure 3871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G195900.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGAGGTGCAAATGGATGATCAGAATGGGACAATGTACACTTCTGAAGGAGGGGAAACAACTATTGTTGAAGTTAGCACAAATCAAGAACCATATGAGGGTATGCTATTTGAATCAGAAGATGCTGCCAGAGTATTCTATGATGATTATGCCAGTCGCGTAGGATTTTTGACCCGTGTTCTGTCATCCCGGAAGTCTGAGCGTGATGGGTCAATAATTTCTCGTGGACTTGGATGTAGAGGGGTCTCTGATAATGGTAGAAAAGTAATGCAGGAGTGTGCACAACGAGAATTTTGCACAGCCATGGTGTTGTTGAGGCAAGAGAAGCCTGGAAGTTGGGTTGTCAAGAAGTTTTTGAAGGACCATAATCATCCGTTAGTGGTTCAATCACAAAAGAGTCGCCGAACGCTTGATGAGAAGGATAAGAAAATTCAGGAGTTAACTGCACAACTGCGAGTGAAGAAGCGGTTAAGTGCAGCATATAGAGAACAGCTACTTGCCTTTATGAAGGATGTTGAAGACCATAACAATCACCTATCAATAAAACTTCAATCAGTCTTTGACAATCTAAAAGTGCTTGAAGCTAAAACAGTAGGTTTTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

202

Amino Acids

22.97

Weight (kDa)

7.7

Isoelectric Point (pI)

40.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43280 AT2G43280
fragaria_vesca	FvH4_4g10892 FvH4_4g10892 FvH4_4g10892 FvH4_4g10892 FvH4_4g10892
malus_domestica	MD04G1042000.v1.1 MD04G1042100.v1.1
prunus_persica	Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1
pyrus_communis	pycom04g03700
rosa_chinensis	RchiOBHm_Chr4g0406491
rosa_multiflora	Rmu_ssc0000186.1_g000028
rosa_roxburghii	Rroxscaffold_5G00351400
rosa_rugosa	Rorug04G0072000
rosa_samantha	Rh4AG138900 Rh4BG135900 Rh4CG146200 Rh4DG133300
rosa_wichuraiana	Rw4G011320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	159
AciI	CCGC	1 cut(s)	466
AcsI	RAATTY	2 cut(s)	290, 429
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	7 cut(s)	71, 113, 358, 386, 518, 551, 581
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	2 cut(s)	493, 584
AluI	AGCT	2 cut(s)	493, 584
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	250
Alw44I	GTGCAC	1 cut(s)	279
ApaLI	GTGCAC	1 cut(s)	279
ApeKI	GCWGC	2 cut(s)	125, 476
ApoI	RAATTY	2 cut(s)	290, 429
AspS9I	GGNCC	1 cut(s)	361
AsuC2I	CCSGG	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	361
BaeGI	GKGCMC	1 cut(s)	283
BauI	CACGAG	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	525
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	2 cut(s)	112, 488
BccI	CCATC	1 cut(s)	200
BcgI	CGANNNNNNTGC	2 cut(s)	276, 310
BciT130I	CCWGG	1 cut(s)	330
BclI	TGATCA	1 cut(s)	19
BcnI	CCSGG	1 cut(s)	190
BcoDI	GTCTC	1 cut(s)	250
BisI	GCNGC	2 cut(s)	126, 477
BlsI	GCNGC	2 cut(s)	127, 478
Bme1390I	CCNGG	2 cut(s)	190, 330
Bme18I	GGWCC	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	361
BmrFI	CCNGG	2 cut(s)	190, 330
BmsI	GCATC	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	525
BpuMI	CCSGG	1 cut(s)	190
BsaI	GGTCTC	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	1 cut(s)	303
BseGI	GGATG	5 cut(s)	22, 185, 239, 370, 517
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	153
BseSI	GKGCMC	1 cut(s)	283
BseXI	GCAGC	2 cut(s)	112, 488
BsgI	GTGCAG	2 cut(s)	429, 495
Bsh1236I	CGCG	1 cut(s)	159
BsiHKAI	GWGCWC	1 cut(s)	283
BsiSI	CCGG	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	1 cut(s)	250
BsmFI	GGGAC	1 cut(s)	43
Bso31I	GGTCTC	1 cut(s)	250
Bsp1286I	GDGCHC	1 cut(s)	283
Bsp1407I	TGTACA	1 cut(s)	36
Bsp143I	GATC	1 cut(s)	19
Bsp19I	CCATGG	1 cut(s)	303
BspACI	CCGC	1 cut(s)	466
BspCNI	CTCAG	1 cut(s)	190
BspFNI	CGCG	1 cut(s)	159
BspTNI	GGTCTC	1 cut(s)	250
BsrGI	TGTACA	1 cut(s)	36
BsrI	ACTGG	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	303
BssMI	GATC	1 cut(s)	19
BssSI	CACGAG	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	303
Bst2BI	CACGAG	1 cut(s)	222
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	1 cut(s)	592
BstAUI	TGTACA	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	198
BstDSI	CCRYGG	1 cut(s)	303
BstF5I	GGATG	5 cut(s)	22, 185, 239, 370, 517
BstFNI	CGCG	1 cut(s)	159
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	1 cut(s)	325
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	2 cut(s)	188, 328
BstSLI	GKGCMC	1 cut(s)	283
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	2 cut(s)	112, 488
BstV2I	GAAGAC	1 cut(s)	525
BtgI	CCRYGG	1 cut(s)	303
BtsCI	GGATG	5 cut(s)	22, 185, 239, 370, 517
Cfr13I	GGNCC	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	2 cut(s)	304, 603
CviJI	RGCY	4 cut(s)	302, 328, 493, 584
CviKI_1	RGCY	4 cut(s)	302, 328, 493, 584
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	303
Eco31I	GGTCTC	1 cut(s)	250
Eco47I	GGWCC	1 cut(s)	361
Eco57I	CTGAAG	1 cut(s)	66
EcoRII	CCWGG	1 cut(s)	328
EcoT14I	CCWWGG	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	303
FaeI	CATG	2 cut(s)	307, 606
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	2 cut(s)	303, 602
FauNDI	CATATG	1 cut(s)	94
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	2 cut(s)	126, 477
FokI	GGATG	5 cut(s)	29, 172, 246, 357, 524
Fsp4HI	GCNGC	2 cut(s)	126, 477
GluI	GCNGC	2 cut(s)	126, 477
HapII	CCGG	1 cut(s)	190
Hin1II	CATG	2 cut(s)	307, 606
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	2 cut(s)	113, 397
HpaI	GTTAAC	1 cut(s)	441
HpaII	CCGG	1 cut(s)	190
HphI	GGTGA	1 cut(s)	524
Hpy166II	GTNNAC	4 cut(s)	39, 227, 281, 441
Hpy188I	TCNGA	5 cut(s)	24, 46, 118, 199, 250
Hpy188III	TCNNGA	3 cut(s)	86, 346, 434
Hpy8I	GTNNAC	4 cut(s)	39, 227, 281, 441
HpyAV	CCTTC	4 cut(s)	41, 352, 412, 502
HpyCH4III	ACNGT	1 cut(s)	592
HpyCH4V	TGCA	6 cut(s)	10, 271, 281, 297, 446, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	325
HpyF3I	CTNAG	1 cut(s)	198
Hsp92II	CATG	2 cut(s)	307, 606
Ksp22I	TGATCA	1 cut(s)	19
KspAI	GTTAAC	1 cut(s)	441
Kzo9I	GATC	1 cut(s)	19
LpnPI	CCDG	7 cut(s)	142, 166, 203, 257, 315, 342, 419
Lsp1109I	GCAGC	2 cut(s)	112, 488
LweI	GCATC	1 cut(s)	112
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	3 cut(s)	131, 472, 530
MhlI	GDGCHC	1 cut(s)	283
MluCI	AATT	3 cut(s)	216, 290, 429
MlyI	GAGTC	1 cut(s)	406
MnlI	CCTC	4 cut(s)	44, 91, 233, 309
MseI	TTAA	2 cut(s)	440, 470
MslI	CAYNNNNRTG	1 cut(s)	302
MspI	CCGG	1 cut(s)	190
MspR9I	CCNGG	2 cut(s)	190, 330
MvaI	CCWGG	1 cut(s)	330
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	325
NciI	CCSGG	1 cut(s)	190
NcoI	CCATGG	1 cut(s)	303
NdeI	CATATG	1 cut(s)	94
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	2 cut(s)	307, 606
PfeI	GAWTC	1 cut(s)	113
PfoI	TCCNGGA	1 cut(s)	188
PkrI	GCNGC	2 cut(s)	127, 478
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	361
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	302
SaqAI	TTAA	2 cut(s)	440, 470
SatI	GCNGC	2 cut(s)	126, 477
Sau3AI	GATC	1 cut(s)	19
Sau96I	GGNCC	1 cut(s)	361
SchI	GAGTC	1 cut(s)	406
ScrFI	CCNGG	2 cut(s)	190, 330
SduI	GDGCHC	1 cut(s)	283
SetI	ASST	5 cut(s)	9, 495, 537, 586, 598
SfaNI	GCATC	1 cut(s)	112
SinI	GGWCC	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	302
Sse9I	AATT	3 cut(s)	216, 290, 429
SsiI	CCGC	1 cut(s)	466
StyD4I	CCNGG	2 cut(s)	188, 328
StyI	CCWWGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	592
TasI	AATT	3 cut(s)	216, 290, 429
TatI	WGTACW	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	2 cut(s)	440, 470
Tru9I	TTAA	2 cut(s)	440, 470
TseI	GCWGC	2 cut(s)	125, 476
TspDTI	ATGAA	1 cut(s)	521
TspGWI	ACGGA	1 cut(s)	363
VneI	GTGCAC	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	361
XapI	RAATTY	2 cut(s)	290, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.