Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004298

Physical Location & Seq

Genomic Coordinates Reverse (-)

18683810 .. 18690609

Gene Structure 6800 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G196000.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGATTCAGATGAGGGGGCTAGAGCAGTGGAGAGTTCTTCCTCACAGGCACTGGTTTTATATGAAGCAGATTCCATTTTGGAACCTTATGAGGGTATGGAATTTGAATCTGAAGATGCTGCCAAGATATTTTATGATGAGTATGCACGACGTGTTGGATTTGTCATGCGTGTGATGTCATGCCGTCGATCCGAGAGAGATGGTAGGATTCTTGCCCGTCGACTTGGGTGTAATAAGGAGGGCCACTGTGTTAGTATTCGGGGTAAATTTGGGCCAGTTCGAAAACCACGAGCGAGTACAAGGGAAGGTTGTAAGGCAATGATTCACGTGAAGTATGATAAATCCAGTAAATGGGTGATTACCAAATTCATAAAGGATCATAATCATCCACTTGTGGTGTCCCCACGTGAAGCTCGTCAAACAATGGATGAGAAGGATAAGAAAATTCAAGAATTAACTGCAGAGCTTCGGAATAAGAAACGGTTGTGCACAACATATCAGGAACAGCTAACAGCATTTACGAAAATTGTTGAAGAGTATAGTGACCAGCTATCGAAAAAAGTTCAAAATGTTGTAAGCAATCTTAAAGAATTTGAGTCCATAGATCGGGAGCTTTCGCAACATAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

210

Amino Acids

24.22

Weight (kDa)

8.88

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43280 AT2G43280
fragaria_vesca	FvH4_4g10892 FvH4_4g10892 FvH4_4g10892 FvH4_4g10892 FvH4_4g10892
malus_domestica	MD04G1042000.v1.1 MD04G1042100.v1.1
prunus_persica	Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1
pyrus_communis	pycom04g03700
rosa_chinensis	RchiOBHm_Chr4g0406491
rosa_multiflora	Rmu_ssc0000186.1_g000028
rosa_roxburghii	Rroxscaffold_5G00351400
rosa_rugosa	Rorug04G0072000
rosa_samantha	Rh4AG138900 Rh4BG135900 Rh4CG146200 Rh4DG133300
rosa_wichuraiana	Rw4G011320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	351
AccI	GTMKAC	1 cut(s)	220
AclWI	GGATC	2 cut(s)	183, 384
AcsI	RAATTY	5 cut(s)	101, 266, 365, 444, 590
AcuI	CTGAAG	1 cut(s)	132
AcvI	CACGTG	2 cut(s)	328, 407
AdeI	CACNNNGTG	1 cut(s)	152
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	3 cut(s)	92, 351, 606
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	4 cut(s)	107, 449, 533, 566
AjiI	CACGTC	1 cut(s)	152
AluBI	AGCT	5 cut(s)	413, 466, 508, 550, 613
AluI	AGCT	5 cut(s)	413, 466, 508, 550, 613
Alw21I	GWGCWC	1 cut(s)	491
Alw44I	GTGCAC	1 cut(s)	487
AlwI	GGATC	2 cut(s)	183, 384
AlwNI	CAGNNNCTG	1 cut(s)	52
AoxI	GGCC	2 cut(s)	241, 272
ApaLI	GTGCAC	1 cut(s)	487
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	5 cut(s)	101, 266, 365, 444, 590
AspS9I	GGNCC	2 cut(s)	241, 272
AsuHPI	GGTGA	1 cut(s)	367
AsuII	TTCGAA	1 cut(s)	280
BaeGI	GKGCMC	1 cut(s)	491
BauI	CACGAG	1 cut(s)	288
BbrPI	CACGTG	2 cut(s)	328, 407
Bbv12I	GWGCWC	1 cut(s)	491
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	1 cut(s)	194
BceAI	ACGGC	1 cut(s)	168
BfaI	CTAG	1 cut(s)	21
BfmI	CTRYAG	1 cut(s)	459
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
BmgBI	CACGTC	1 cut(s)	152
BmgT120I	GGNCC	2 cut(s)	241, 272
BmiI	GGNNCC	1 cut(s)	84
BmsI	GCATC	1 cut(s)	106
Bpu14I	TTCGAA	1 cut(s)	280
BsaAI	YACGTR	2 cut(s)	328, 407
BsaBI	GATNNNNATC	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 351, 606
Bse1I	ACTGG	3 cut(s)	57, 275, 345
Bse3DI	GCAATG	1 cut(s)	324
Bse8I	GATNNNNATC	1 cut(s)	381
BseGI	GGATG	2 cut(s)	385, 433
BseJI	GATNNNNATC	1 cut(s)	381
BseLI	CCNNNNNNNGG	3 cut(s)	92, 351, 606
BseMI	GCAATG	1 cut(s)	324
BseNI	ACTGG	3 cut(s)	57, 275, 345
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	1 cut(s)	106
BshFI	GGCC	2 cut(s)	243, 274
BsiHKAI	GWGCWC	1 cut(s)	491
BslFI	GGGAC	1 cut(s)	385
BslI	CCNNNNNNNGG	3 cut(s)	92, 351, 606
BsmFI	GGGAC	1 cut(s)	385
BsnI	GGCC	2 cut(s)	243, 274
Bsp119I	TTCGAA	1 cut(s)	280
Bsp1286I	GDGCHC	1 cut(s)	491
Bsp143I	GATC	3 cut(s)	188, 376, 604
BspANI	GGCC	2 cut(s)	243, 274
BspLI	GGNNCC	1 cut(s)	84
BspMAI	CTGCAG	1 cut(s)	463
BspPI	GGATC	2 cut(s)	183, 384
BspT104I	TTCGAA	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	324
BsrI	ACTGG	3 cut(s)	57, 275, 345
BssMI	GATC	3 cut(s)	188, 376, 604
BssSI	CACGAG	1 cut(s)	288
Bst2BI	CACGAG	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	248, 483
Bst6I	CTCTTC	1 cut(s)	528
BstBAI	YACGTR	2 cut(s)	328, 407
BstBI	TTCGAA	1 cut(s)	280
BstF5I	GGATG	2 cut(s)	385, 433
BstKTI	GATC	3 cut(s)	191, 379, 607
BstMBI	GATC	3 cut(s)	188, 376, 604
BstSFI	CTRYAG	1 cut(s)	459
BstSLI	GKGCMC	1 cut(s)	491
BstV1I	GCAGC	1 cut(s)	106
BsuRI	GGCC	2 cut(s)	243, 274
BtrI	CACGTC	1 cut(s)	152
BtsCI	GGATG	2 cut(s)	385, 433
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	3 cut(s)	33, 50, 244
CaiI	CAGNNNCTG	1 cut(s)	52
Cfr13I	GGNCC	2 cut(s)	241, 272
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	2 cut(s)	166, 180
CviJI	RGCY	8 cut(s)	20, 243, 274, 413, 466, 508, 550, 613
CviKI_1	RGCY	8 cut(s)	20, 243, 274, 413, 466, 508, 550, 613
CviQI	GTAC	1 cut(s)	297
DpnI	GATC	3 cut(s)	190, 378, 606
DpnII	GATC	3 cut(s)	188, 376, 604
DraIII	CACNNNGTG	1 cut(s)	152
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Eco57I	CTGAAG	1 cut(s)	132
Eco72I	CACGTG	2 cut(s)	328, 407
FaeI	CATG	2 cut(s)	169, 183
FaqI	GGGAC	1 cut(s)	385
FatI	CATG	2 cut(s)	165, 179
FblI	GTMKAC	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	2 cut(s)	372, 440
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	2 cut(s)	243, 274
Hin1II	CATG	2 cut(s)	169, 183
HincII	GTYRAC	1 cut(s)	221
HindII	GTYRAC	1 cut(s)	221
HinfI	GANTC	6 cut(s)	5, 71, 107, 208, 322, 596
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	2 cut(s)	221, 489
Hpy188I	TCNGA	4 cut(s)	10, 112, 193, 471
Hpy188III	TCNNGA	3 cut(s)	449, 500, 608
Hpy8I	GTNNAC	2 cut(s)	221, 489
Hpy99I	CGWCG	3 cut(s)	153, 189, 222
HpyAV	CCTTC	2 cut(s)	299, 427
HpyCH4III	ACNGT	2 cut(s)	248, 483
HpyCH4IV	ACGT	3 cut(s)	151, 327, 406
HpyCH4V	TGCA	3 cut(s)	146, 461, 489
HpySE526I	ACGT	3 cut(s)	151, 327, 406
Hsp92II	CATG	2 cut(s)	169, 183
Kzo9I	GATC	3 cut(s)	188, 376, 604
LmnI	GCTCC	1 cut(s)	610
LpnPI	CCDG	6 cut(s)	32, 38, 288, 358, 485, 560
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	21
MaeII	ACGT	3 cut(s)	151, 327, 406
MaeIII	GTNAC	1 cut(s)	542
MalI	GATC	3 cut(s)	190, 378, 606
MboI	GATC	3 cut(s)	188, 376, 604
MboII	GAAGA	3 cut(s)	30, 125, 545
MhlI	GDGCHC	1 cut(s)	491
MluCI	AATT	7 cut(s)	101, 266, 365, 444, 452, 525, 590
MlyI	GAGTC	1 cut(s)	605
MmeI	TCCRAC	1 cut(s)	136
MnlI	CCTC	4 cut(s)	7, 52, 85, 232
MseI	TTAA	2 cut(s)	455, 585
MslI	CAYNNNNRTG	1 cut(s)	170
NdeII	GATC	3 cut(s)	188, 376, 604
NlaIII	CATG	2 cut(s)	169, 183
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	542
NspV	TTCGAA	1 cut(s)	280
PcsI	WCGNNNNNNNCGW	2 cut(s)	286, 412
PfeI	GAWTC	5 cut(s)	5, 71, 107, 208, 322
PflMI	CCANNNNNTGG	1 cut(s)	351
PkrI	GCNGC	1 cut(s)	121
PleI	GAGTC	1 cut(s)	604
PmaCI	CACGTG	2 cut(s)	328, 407
PmlI	CACGTG	2 cut(s)	328, 407
PpsI	GAGTC	1 cut(s)	604
Ppu21I	YACGTR	2 cut(s)	328, 407
PspCI	CACGTG	2 cut(s)	328, 407
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	2 cut(s)	241, 272
PstI	CTGCAG	1 cut(s)	463
PstNI	CAGNNNCTG	1 cut(s)	52
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
RseI	CAYNNNNRTG	1 cut(s)	170
SalI	GTCGAC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	455, 585
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	3 cut(s)	188, 376, 604
Sau96I	GGNCC	2 cut(s)	241, 272
SchI	GAGTC	1 cut(s)	605
SduI	GDGCHC	1 cut(s)	491
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	1 cut(s)	459
SfuI	TTCGAA	1 cut(s)	280
SmiMI	CAYNNNNRTG	1 cut(s)	170
Sse9I	AATT	7 cut(s)	101, 266, 365, 444, 452, 525, 590
SspMI	CTAG	1 cut(s)	21
TaaI	ACNGT	2 cut(s)	248, 483
TaiI	ACGT	3 cut(s)	154, 330, 409
TaqI	TCGA	4 cut(s)	187, 220, 280, 554
TasI	AATT	7 cut(s)	101, 266, 365, 444, 452, 525, 590
TatI	WGTACW	1 cut(s)	296
TfiI	GAWTC	5 cut(s)	5, 71, 107, 208, 322
Tru1I	TTAA	2 cut(s)	455, 585
Tru9I	TTAA	2 cut(s)	455, 585
TscAI	CASTG	3 cut(s)	33, 57, 251
TseFI	GTSAC	1 cut(s)	542
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	542
TspDTI	ATGAA	2 cut(s)	78, 358
TspRI	CASTG	3 cut(s)	33, 57, 251
Van91I	CCANNNNNTGG	1 cut(s)	351
VneI	GTGCAC	1 cut(s)	487
XapI	RAATTY	5 cut(s)	101, 266, 365, 444, 590
XmiI	GTMKAC	1 cut(s)	220
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.