Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000186.1

Orthogroup ID

OG0004298

Physical Location & Seq

Genomic Coordinates Reverse (-)

149352 .. 152383

Gene Structure 3032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000186.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

atgacttatgagatctctgacgacctctttgggggacctccaatgaggttttcagagaagttctgtgggcagcggctgttggcttcccgagaacaaacatcgcctttggctctgctccaatcaatggattcaggaacacaggaagtggttgcatatgaaggagaggccattttagaaccatacgagggtatggaatttgaatctgaagatgctgcaaagatattttatgatgactatgccagacgccttggatttgtcatgcgtgtcatgtcatgtcgtcgatccgaaagagatggtaggattctcgctcgtcgacttggctgtaataaggaaggtcactgtgttagtattcgaggtaaatttggtcccgtcagaaaaccgcgagccagtacaagggagggttgtaaggcaatgattcatgtcaagtatgataaatctggtaaatgggtgattacaaaatttgttaaggaacataaccattcacttgtggtgtctccacgtgaagcacgtcaaacaatggatgagaaggataagaaaattcaagaattatctgcagagcttcggaataagaaacgcttgtgtacaacatatcaagaacagctaacagcatttatgaaaattgttgaagagtataatgaccagctatccttgaaagtgaaaaacgtagttaacaatcttaaagaattcgaatccatagatgtggagcttacgcagcgaggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1

Protein Analysis

240

Amino Acids

27.68

Weight (kDa)

8.65

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004298)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43280 AT2G43280
fragaria_vesca	FvH4_4g10892 FvH4_4g10892 FvH4_4g10892 FvH4_4g10892 FvH4_4g10892
malus_domestica	MD04G1042000.v1.1 MD04G1042100.v1.1
prunus_persica	Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G195900_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1 Prupe.1G196000_v2.0.a1
pyrus_communis	pycom04g03700
rosa_chinensis	RchiOBHm_Chr4g0406491
rosa_multiflora	Rmu_ssc0000186.1_g000028
rosa_roxburghii	Rroxscaffold_5G00351400
rosa_rugosa	Rorug04G0072000
rosa_samantha	Rh4AG138900 Rh4BG135900 Rh4CG146200 Rh4DG133300
rosa_wichuraiana	Rw4G011320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	124
AccI	GTMKAC	1 cut(s)	313
AccII	CGCG	1 cut(s)	382
AciI	CCGC	2 cut(s)	73, 380
AclWI	GGATC	1 cut(s)	276
AcsI	RAATTY	5 cut(s)	194, 359, 458, 537, 683
AcuI	CTGAAG	1 cut(s)	225
AcvI	CACGTG	1 cut(s)	500
AcyI	GRCGYC	1 cut(s)	244
AfaI	GTAC	2 cut(s)	391, 583
AfiI	CCNNNNNNNGG	4 cut(s)	31, 124, 185, 393
AgsI	TTSAA	4 cut(s)	200, 542, 626, 652
AjiI	CACGTC	1 cut(s)	509
AjuI	GAANNNNNNNTTGG	2 cut(s)	34, 66
AluBI	AGCT	4 cut(s)	559, 601, 643, 706
AluI	AGCT	4 cut(s)	559, 601, 643, 706
Alw26I	GTCTC	1 cut(s)	498
AlwI	GGATC	1 cut(s)	276
AlwNI	CAGNNNCTG	1 cut(s)	76
Ama87I	CYCGRG	1 cut(s)	87
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	3 cut(s)	70, 212, 712
ApoI	RAATTY	5 cut(s)	194, 359, 458, 537, 683
ArsI	GACNNNNNNTTYG	2 cut(s)	11, 43
AspS9I	GGNCC	2 cut(s)	35, 365
AsuHPI	GGTGA	1 cut(s)	460
AsuII	TTCGAA	1 cut(s)	687
AvaI	CYCGRG	1 cut(s)	87
AvaII	GGWCC	2 cut(s)	35, 365
BbrPI	CACGTG	1 cut(s)	500
BbvI	GCAGC	2 cut(s)	82, 199
BccI	CCATC	1 cut(s)	287
BcoDI	GTCTC	1 cut(s)	498
BfmI	CTRYAG	1 cut(s)	552
BglII	AGATCT	1 cut(s)	12
BisI	GCNGC	4 cut(s)	71, 74, 213, 713
BlsI	GCNGC	4 cut(s)	72, 75, 214, 714
Bme18I	GGWCC	2 cut(s)	35, 365
BmeT110I	CYCGRG	1 cut(s)	87
BmgBI	CACGTC	1 cut(s)	509
BmgT120I	GGNCC	2 cut(s)	35, 365
BmiI	GGNNCC	2 cut(s)	36, 367
BmsI	GCATC	1 cut(s)	199
Bpu14I	TTCGAA	1 cut(s)	687
BsaAI	YACGTR	1 cut(s)	500
BsaHI	GRCGYC	1 cut(s)	244
BsaJI	CCNNGG	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	4 cut(s)	31, 124, 185, 393
Bse1I	ACTGG	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	417
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	4 cut(s)	31, 124, 185, 393
BseMI	GCAATG	1 cut(s)	417
BseNI	ACTGG	1 cut(s)	387
BseXI	GCAGC	2 cut(s)	82, 199
Bsh1236I	CGCG	1 cut(s)	382
BshFI	GGCC	1 cut(s)	167
BsiHKCI	CYCGRG	1 cut(s)	87
BslFI	GGGAC	2 cut(s)	48, 351
BslI	CCNNNNNNNGG	4 cut(s)	31, 124, 185, 393
BsmAI	GTCTC	1 cut(s)	498
BsmFI	GGGAC	2 cut(s)	48, 351
BsnI	GGCC	1 cut(s)	167
BsoBI	CYCGRG	1 cut(s)	87
Bsp119I	TTCGAA	1 cut(s)	687
Bsp1407I	TGTACA	1 cut(s)	581
Bsp143I	GATC	2 cut(s)	12, 281
BspACI	CCGC	2 cut(s)	73, 380
BspANI	GGCC	1 cut(s)	167
BspFNI	CGCG	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	36, 367
BspMAI	CTGCAG	1 cut(s)	556
BspPI	GGATC	1 cut(s)	276
BspT104I	TTCGAA	1 cut(s)	687
BsrDI	GCAATG	1 cut(s)	417
BsrGI	TGTACA	1 cut(s)	581
BsrI	ACTGG	1 cut(s)	387
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	2 cut(s)	12, 281
BssNI	GRCGYC	1 cut(s)	244
BssT1I	CCWWGG	1 cut(s)	247
Bst4CI	ACNGT	1 cut(s)	341
Bst6I	CTCTTC	1 cut(s)	621
BstACI	GRCGYC	1 cut(s)	244
BstAUI	TGTACA	1 cut(s)	581
BstBAI	YACGTR	1 cut(s)	500
BstBI	TTCGAA	1 cut(s)	687
BstC8I	GCNNGC	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	526
BstFNI	CGCG	1 cut(s)	382
BstKTI	GATC	2 cut(s)	15, 284
BstMAI	GTCTC	1 cut(s)	498
BstMBI	GATC	2 cut(s)	12, 281
BstMWI	GCNNNNNNNGC	1 cut(s)	712
BstSFI	CTRYAG	1 cut(s)	552
BstUI	CGCG	1 cut(s)	382
BstV1I	GCAGC	2 cut(s)	82, 199
BstX2I	RGATCY	1 cut(s)	12
BstXI	CCANNNNNNTGG	1 cut(s)	700
BstYI	RGATCY	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	167
BtgZI	GCGATG	1 cut(s)	84
BtrI	CACGTC	1 cut(s)	509
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	337
Cac8I	GCNNGC	1 cut(s)	384
CaiI	CAGNNNCTG	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	35, 365
CseI	GACGC	1 cut(s)	252
Csp6I	GTAC	2 cut(s)	390, 582
CviAII	CATG	4 cut(s)	259, 268, 273, 419
CviQI	GTAC	2 cut(s)	390, 582
DpnI	GATC	2 cut(s)	14, 283
DpnII	GATC	2 cut(s)	12, 281
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
Eco130I	CCWWGG	1 cut(s)	247
Eco47I	GGWCC	2 cut(s)	35, 365
Eco57I	CTGAAG	1 cut(s)	225
Eco72I	CACGTG	1 cut(s)	500
Eco88I	CYCGRG	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	683
EcoT14I	CCWWGG	1 cut(s)	247
ErhI	CCWWGG	1 cut(s)	247
FaeI	CATG	4 cut(s)	262, 271, 276, 422
FalI	AAGNNNNNCTT	2 cut(s)	560, 592
FaqI	GGGAC	2 cut(s)	48, 351
FatI	CATG	4 cut(s)	258, 267, 272, 418
FauNDI	CATATG	1 cut(s)	154
FblI	GTMKAC	1 cut(s)	313
Fnu4HI	GCNGC	4 cut(s)	71, 74, 213, 713
FokI	GGATG	1 cut(s)	533
Fsp4HI	GCNGC	4 cut(s)	71, 74, 213, 713
GluI	GCNGC	4 cut(s)	71, 74, 213, 713
HaeIII	GGCC	1 cut(s)	167
HgaI	GACGC	1 cut(s)	252
Hin1I	GRCGYC	1 cut(s)	244
Hin1II	CATG	4 cut(s)	262, 271, 276, 422
HincII	GTYRAC	2 cut(s)	314, 670
HindII	GTYRAC	2 cut(s)	314, 670
HinfI	GANTC	5 cut(s)	128, 200, 301, 415, 689
HpaI	GTTAAC	1 cut(s)	670
HphI	GGTGA	1 cut(s)	460
Hpy166II	GTNNAC	3 cut(s)	314, 582, 670
Hpy188I	TCNGA	6 cut(s)	19, 55, 205, 286, 374, 564
Hpy188III	TCNNGA	4 cut(s)	87, 132, 542, 593
Hpy8I	GTNNAC	3 cut(s)	314, 582, 670
Hpy99I	CGWCG	2 cut(s)	282, 315
HpyAV	CCTTC	3 cut(s)	152, 326, 520
HpyCH4III	ACNGT	1 cut(s)	341
HpyCH4IV	ACGT	3 cut(s)	499, 508, 663
HpyCH4V	TGCA	3 cut(s)	152, 215, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	712
HpySE526I	ACGT	3 cut(s)	499, 508, 663
Hsp92I	GRCGYC	1 cut(s)	244
Hsp92II	CATG	4 cut(s)	262, 271, 276, 422
KspAI	GTTAAC	1 cut(s)	670
Kzo9I	GATC	2 cut(s)	12, 281
LmnI	GCTCC	2 cut(s)	120, 703
LpnPI	CCDG	6 cut(s)	117, 125, 253, 400, 423, 653
Lsp1109I	GCAGC	2 cut(s)	82, 199
LweI	GCATC	1 cut(s)	199
MaeII	ACGT	3 cut(s)	499, 508, 663
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	2 cut(s)	14, 283
MboI	GATC	2 cut(s)	12, 281
MboII	GAAGA	2 cut(s)	218, 638
MflI	RGATCY	1 cut(s)	12
MluCI	AATT	7 cut(s)	194, 359, 458, 537, 545, 618, 683
MnlI	CCTC	8 cut(s)	35, 39, 48, 157, 178, 347, 391, 710
MseI	TTAA	3 cut(s)	465, 669, 678
MslI	CAYNNNNRTG	1 cut(s)	698
MspA1I	CMGCKG	1 cut(s)	73
MvnI	CGCG	1 cut(s)	382
MwoI	GCNNNNNNNGC	1 cut(s)	712
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	2 cut(s)	12, 281
NlaIII	CATG	4 cut(s)	262, 271, 276, 422
NlaIV	GGNNCC	2 cut(s)	36, 367
NmuCI	GTSAC	1 cut(s)	335
NspV	TTCGAA	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	1 cut(s)	505
PfeI	GAWTC	5 cut(s)	128, 200, 301, 415, 689
PflMI	CCANNNNNTGG	1 cut(s)	124
PkrI	GCNGC	4 cut(s)	72, 75, 214, 714
PmaCI	CACGTG	1 cut(s)	500
PmlI	CACGTG	1 cut(s)	500
Ppu21I	YACGTR	1 cut(s)	500
PpuMI	RGGWCCY	1 cut(s)	35
Psp5II	RGGWCCY	1 cut(s)	35
PspCI	CACGTG	1 cut(s)	500
PspN4I	GGNNCC	2 cut(s)	36, 367
PspPI	GGNCC	2 cut(s)	35, 365
PspPPI	RGGWCCY	1 cut(s)	35
PstI	CTGCAG	1 cut(s)	556
PstNI	CAGNNNCTG	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	12
RsaI	GTAC	2 cut(s)	391, 583
RsaNI	GTAC	2 cut(s)	390, 582
RseI	CAYNNNNRTG	1 cut(s)	698
SalI	GTCGAC	1 cut(s)	312
SaqAI	TTAA	3 cut(s)	465, 669, 678
SatI	GCNGC	4 cut(s)	71, 74, 213, 713
Sau3AI	GATC	2 cut(s)	12, 281
Sau96I	GGNCC	2 cut(s)	35, 365
SfaNI	GCATC	1 cut(s)	199
SfcI	CTRYAG	1 cut(s)	552
SfuI	TTCGAA	1 cut(s)	687
SinI	GGWCC	2 cut(s)	35, 365
SmiMI	CAYNNNNRTG	1 cut(s)	698
Sse9I	AATT	7 cut(s)	194, 359, 458, 537, 545, 618, 683
SsiI	CCGC	2 cut(s)	73, 380
StyI	CCWWGG	1 cut(s)	247
TaaI	ACNGT	1 cut(s)	341
TaiI	ACGT	3 cut(s)	502, 511, 666
TaqI	TCGA	4 cut(s)	280, 313, 352, 687
TasI	AATT	7 cut(s)	194, 359, 458, 537, 545, 618, 683
TatI	WGTACW	2 cut(s)	389, 581
TauI	GCSGC	1 cut(s)	76
TfiI	GAWTC	5 cut(s)	128, 200, 301, 415, 689
Tru1I	TTAA	3 cut(s)	465, 669, 678
Tru9I	TTAA	3 cut(s)	465, 669, 678
TscAI	CASTG	1 cut(s)	344
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	3 cut(s)	70, 212, 712
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	3 cut(s)	171, 407, 629
TspRI	CASTG	1 cut(s)	344
Van91I	CCANNNNNTGG	1 cut(s)	124
VpaK11BI	GGWCC	2 cut(s)	35, 365
XapI	RAATTY	5 cut(s)	194, 359, 458, 537, 683
XmiI	GTMKAC	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.