FvH4_4g10892

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0004298
Physical Location & Seq
Forward (+)
14582487 .. 14586275
3789 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10892.t1

Sequence Viewer

Length: 630 bp
ATGGATTCGGATGTGGGAGTTAGAGCAGTGGAGACTTCTTCTCGTCAGGAACCGATTGCATATCAAGAAGAGGCCATTTTAGAACCATACCAAGGTATGGAGTTTGAATCTGAAGATGCTGCCAAGATATTCTATGATGACTATGCGAGGCGCCTTGGATTTGTCATGCGTGTCATGTCATGTCGTCGGTCCGAAAGAGATGGTAGGATTCTTGCTCGTCGACTTGGCTGTAACAAGGAAGGTCACTGTGTTAGTATTCGAGGTAAATTTGGACCCAATAGAAAACCGCGAGCGAGTACAAGGGAAGGGTGTAAGGCAATGATTCATGTCAAGTATGATAAATCTGGTAAGTGGGTGATTACAAAATTCGTTAAGGAACATAACCATTCACTTGTGGTGTCTCCACGTGAAGCACGTCAAACAATGGATGAGAAGGATAAGAAAATTCAGGAATTATCCGCAGAGCTTCGGAATAAGAAACGCTTGTGTACAACATATCAAGAACAGTTAACAGCATTTATGAAAATTGTTGAAGAGTATAATGACCAGCTATCCTTGAAAGTGAGAAACGTAGTTAACAATCTTAAAGAATTCGAGTTCATAGATGTGGAGCTTACGCAACGAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

210

Amino Acids

24.36

Weight (kDa)

9.03

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 44 - 132 1.7e-28 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 150
AccB7I CCANNNNNTGG 1 cut(s) 97
AccI GTMKAC 1 cut(s) 220
AccII CGCG 1 cut(s) 289
AciI CCGC 2 cut(s) 287, 459
AcsI RAATTY 4 cut(s) 266, 365, 444, 590
AcuI CTGAAG 1 cut(s) 132
AcvI CACGTG 1 cut(s) 407
AcyI GRCGYC 1 cut(s) 151
AfaI GTAC 2 cut(s) 298, 490
AfiI CCNNNNNNNGG 2 cut(s) 92, 97
AgsI TTSAA 3 cut(s) 107, 533, 559
AjiI CACGTC 1 cut(s) 416
AluBI AGCT 3 cut(s) 466, 550, 613
AluI AGCT 3 cut(s) 466, 550, 613
Alw26I GTCTC 2 cut(s) 26, 405
AoxI GGCC 1 cut(s) 72
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 4 cut(s) 266, 365, 444, 590
AspLEI GCGC 1 cut(s) 153
AspS9I GGNCC 2 cut(s) 189, 272
AsuHPI GGTGA 1 cut(s) 367
AvaII GGWCC 2 cut(s) 189, 272
BanI GGYRCC 1 cut(s) 150
BbrPI CACGTG 1 cut(s) 407
BbvI GCAGC 1 cut(s) 106
BccI CCATC 1 cut(s) 194
BcoDI GTCTC 2 cut(s) 26, 405
BfoI RGCGCY 1 cut(s) 154
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme18I GGWCC 2 cut(s) 189, 272
BmgBI CACGTC 1 cut(s) 416
BmgT120I GGNCC 2 cut(s) 189, 272
BmiI GGNNCC 3 cut(s) 51, 152, 274
BmsI GCATC 1 cut(s) 106
BsaAI YACGTR 1 cut(s) 407
BsaHI GRCGYC 1 cut(s) 151
BsaJI CCNNGG 2 cut(s) 91, 154
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 97
Bse3DI GCAATG 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 91, 154
BseGI GGATG 2 cut(s) 16, 433
BseLI CCNNNNNNNGG 2 cut(s) 92, 97
BseMI GCAATG 1 cut(s) 324
BseXI GCAGC 1 cut(s) 106
Bsh1236I CGCG 1 cut(s) 289
BshFI GGCC 1 cut(s) 74
BshNI GGYRCC 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 92, 97
BsmAI GTCTC 2 cut(s) 26, 405
BsnI GGCC 1 cut(s) 74
Bsp1407I TGTACA 1 cut(s) 488
BspACI CCGC 2 cut(s) 287, 459
BspANI GGCC 1 cut(s) 74
BspFNI CGCG 1 cut(s) 289
BspLI GGNNCC 3 cut(s) 51, 152, 274
BspT107I GGYRCC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 324
BsrGI TGTACA 1 cut(s) 488
BssECI CCNNGG 2 cut(s) 91, 154
BssNI GRCGYC 1 cut(s) 151
BssT1I CCWWGG 2 cut(s) 91, 154
Bst4CI ACNGT 2 cut(s) 248, 507
Bst6I CTCTTC 2 cut(s) 63, 528
BstACI GRCGYC 1 cut(s) 151
BstAUI TGTACA 1 cut(s) 488
BstBAI YACGTR 1 cut(s) 407
BstC8I GCNNGC 1 cut(s) 291
BstF5I GGATG 2 cut(s) 16, 433
BstFNI CGCG 1 cut(s) 289
BstH2I RGCGCY 1 cut(s) 154
BstHHI GCGC 1 cut(s) 153
BstMAI GTCTC 2 cut(s) 26, 405
BstUI CGCG 1 cut(s) 289
BstV1I GCAGC 1 cut(s) 106
BsuRI GGCC 1 cut(s) 74
BtrI CACGTC 1 cut(s) 416
BtsCI GGATG 2 cut(s) 16, 433
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 2 cut(s) 33, 244
Cac8I GCNNGC 1 cut(s) 291
CfoI GCGC 1 cut(s) 153
Cfr13I GGNCC 2 cut(s) 189, 272
CpoI CGGWCCG 1 cut(s) 189
Csp6I GTAC 2 cut(s) 297, 489
CspI CGGWCCG 1 cut(s) 189
CviAII CATG 4 cut(s) 166, 175, 180, 326
CviJI RGCY 5 cut(s) 74, 228, 466, 550, 613
CviKI_1 RGCY 5 cut(s) 74, 228, 466, 550, 613
CviQI GTAC 2 cut(s) 297, 489
DinI GGCGCC 1 cut(s) 152
Eam1104I CTCTTC 2 cut(s) 63, 528
EarI CTCTTC 2 cut(s) 63, 528
Eco130I CCWWGG 2 cut(s) 91, 154
Eco47I GGWCC 2 cut(s) 189, 272
Eco57I CTGAAG 1 cut(s) 132
Eco72I CACGTG 1 cut(s) 407
EcoRI GAATTC 1 cut(s) 590
EcoT14I CCWWGG 2 cut(s) 91, 154
EgeI GGCGCC 1 cut(s) 152
EheI GGCGCC 1 cut(s) 152
ErhI CCWWGG 2 cut(s) 91, 154
FaeI CATG 4 cut(s) 169, 178, 183, 329
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FatI CATG 4 cut(s) 165, 174, 179, 325
FblI GTMKAC 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 2 cut(s) 23, 440
Fsp4HI GCNGC 1 cut(s) 120
GlaI GCGC 1 cut(s) 152
GluI GCNGC 1 cut(s) 120
HaeII RGCGCY 1 cut(s) 154
HaeIII GGCC 1 cut(s) 74
HhaI GCGC 1 cut(s) 153
Hin1I GRCGYC 1 cut(s) 151
Hin1II CATG 4 cut(s) 169, 178, 183, 329
Hin6I GCGC 1 cut(s) 151
HinP1I GCGC 1 cut(s) 151
HincII GTYRAC 3 cut(s) 221, 510, 577
HindII GTYRAC 3 cut(s) 221, 510, 577
HinfI GANTC 4 cut(s) 5, 107, 208, 322
HpaI GTTAAC 2 cut(s) 510, 577
HphI GGTGA 1 cut(s) 367
Hpy166II GTNNAC 4 cut(s) 221, 489, 510, 577
Hpy188I TCNGA 4 cut(s) 10, 112, 193, 471
Hpy188III TCNNGA 4 cut(s) 47, 65, 449, 500
Hpy8I GTNNAC 4 cut(s) 221, 489, 510, 577
Hpy99I CGWCG 2 cut(s) 189, 222
HpyAV CCTTC 3 cut(s) 233, 299, 427
HpyCH4III ACNGT 2 cut(s) 248, 507
HpyCH4IV ACGT 3 cut(s) 406, 415, 570
HpyCH4V TGCA 1 cut(s) 59
HpySE526I ACGT 3 cut(s) 406, 415, 570
Hsp92I GRCGYC 1 cut(s) 151
Hsp92II CATG 4 cut(s) 169, 178, 183, 329
HspAI GCGC 1 cut(s) 151
KasI GGCGCC 1 cut(s) 150
KspAI GTTAAC 2 cut(s) 510, 577
LmnI GCTCC 1 cut(s) 610
LpnPI CCDG 4 cut(s) 32, 330, 434, 560
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 1 cut(s) 106
MaeII ACGT 3 cut(s) 406, 415, 570
MaeIII GTNAC 2 cut(s) 230, 242
MboII GAAGA 4 cut(s) 30, 80, 125, 545
MluCI AATT 6 cut(s) 266, 365, 444, 452, 525, 590
Mly113I GGCGCC 1 cut(s) 151
MnlI CCTC 4 cut(s) 64, 141, 254, 617
MseI TTAA 4 cut(s) 372, 509, 576, 585
MslI CAYNNNNRTG 1 cut(s) 605
MvnI CGCG 1 cut(s) 289
NarI GGCGCC 1 cut(s) 151
NlaIII CATG 4 cut(s) 169, 178, 183, 329
NlaIV GGNNCC 3 cut(s) 51, 152, 274
NmuCI GTSAC 1 cut(s) 242
PcsI WCGNNNNNNNCGW 1 cut(s) 412
PfeI GAWTC 4 cut(s) 5, 107, 208, 322
PflMI CCANNNNNTGG 1 cut(s) 97
PkrI GCNGC 1 cut(s) 121
PluTI GGCGCC 1 cut(s) 154
PmaCI CACGTG 1 cut(s) 407
PmlI CACGTG 1 cut(s) 407
Ppu21I YACGTR 1 cut(s) 407
PspCI CACGTG 1 cut(s) 407
PspN4I GGNNCC 3 cut(s) 51, 152, 274
PspPI GGNCC 2 cut(s) 189, 272
RsaI GTAC 2 cut(s) 298, 490
RsaNI GTAC 2 cut(s) 297, 489
RseI CAYNNNNRTG 1 cut(s) 605
Rsr2I CGGWCCG 1 cut(s) 189
RsrII CGGWCCG 1 cut(s) 189
SalI GTCGAC 1 cut(s) 219
SaqAI TTAA 4 cut(s) 372, 509, 576, 585
SatI GCNGC 1 cut(s) 120
Sau96I GGNCC 2 cut(s) 189, 272
SetI ASST 9 cut(s) 97, 244, 265, 409, 418, 468, 552, 573, 615
SfaNI GCATC 1 cut(s) 106
SfoI GGCGCC 1 cut(s) 152
SinI GGWCC 2 cut(s) 189, 272
SmiMI CAYNNNNRTG 1 cut(s) 605
Sse9I AATT 6 cut(s) 266, 365, 444, 452, 525, 590
SsiI CCGC 2 cut(s) 287, 459
SspDI GGCGCC 1 cut(s) 150
StyI CCWWGG 2 cut(s) 91, 154
TaaI ACNGT 2 cut(s) 248, 507
TaiI ACGT 3 cut(s) 409, 418, 573
TaqI TCGA 3 cut(s) 220, 259, 594
TaqII GACCGA 1 cut(s) 177
TasI AATT 6 cut(s) 266, 365, 444, 452, 525, 590
TatI WGTACW 2 cut(s) 296, 488
TfiI GAWTC 4 cut(s) 5, 107, 208, 322
Tru1I TTAA 4 cut(s) 372, 509, 576, 585
Tru9I TTAA 4 cut(s) 372, 509, 576, 585
TscAI CASTG 2 cut(s) 33, 251
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 1 cut(s) 119
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 3 cut(s) 314, 536, 589
TspRI CASTG 2 cut(s) 33, 251
Van91I CCANNNNNTGG 1 cut(s) 97
VpaK11BI GGWCC 2 cut(s) 189, 272
XapI RAATTY 4 cut(s) 266, 365, 444, 590
XmiI GTMKAC 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.