Rroxscaffold_5G00351400

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0004298
Physical Location & Seq
Reverse (-)
27616722 .. 27620027
3306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00351400.1

Sequence Viewer

Length: 600 bp
ATGGATTCAGGAGCACAGGAAGTGATTGCATATGAAGGAGAGGCCATTTTAGAACCATACGAGGGTATGGAATTTGAATCTGAAGATGCTGCAAAGATATTTTATGATGACTATGCCAGGCGCCTTGGATTTGTCATGCGTGTCATGTCATGTCGTCGATCCGAAAGAGATGGTAGGATTCTTGCTCGTCGACTTGGCTGTAATAAGGAAGGTCACTGTGTTAGTATTCGAGGTAAATTTGGACCTGTCAGAAAACCGCGAGCCAGTACAAGGGAGGGTTGTAAGGCAATGATTCATGTCAAGTATGATAAATCTGGTAAATGGGTGATTACAAAATTTGTTAAGGAACATAACCATTCACTTGTGGTGTCTCCACGTGAAGCACGTCAAACAATGGATGAGAAGGATAAGAAAATTCAAGAATTATCTGCAGAGCTTCGGAATAAGAAACGCTTGTGTACAACATATCAAGAACAGCTAATAGCATTTATGAAAATTGTTGAAGAGTATAATGACCAGCTATCCTTGAAAGTGAAAAACATAGTTAACAATCTTAAAGAATTCGAGTCCATAGATGTGGAGTTTACACAGCGAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

199

Amino Acids

23.12

Weight (kDa)

8.88

Isoelectric Point (pI)

48.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 34 - 122 2.1e-28 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 120
AccI GTMKAC 1 cut(s) 190
AccII CGCG 1 cut(s) 259
AciI CCGC 1 cut(s) 257
AclWI GGATC 1 cut(s) 153
AcsI RAATTY 5 cut(s) 71, 236, 335, 414, 560
AcuI CTGAAG 1 cut(s) 102
AcvI CACGTG 1 cut(s) 377
AcyI GRCGYC 1 cut(s) 121
AfaI GTAC 2 cut(s) 268, 460
AfiI CCNNNNNNNGG 2 cut(s) 62, 270
AgsI TTSAA 4 cut(s) 77, 419, 503, 529
AjiI CACGTC 1 cut(s) 386
AjnI CCWGG 1 cut(s) 116
AluBI AGCT 3 cut(s) 436, 478, 520
AluI AGCT 3 cut(s) 436, 478, 520
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 375
AlwI GGATC 1 cut(s) 153
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 5 cut(s) 71, 236, 335, 414, 560
AspLEI GCGC 1 cut(s) 123
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 337
AvaII GGWCC 1 cut(s) 242
BanI GGYRCC 1 cut(s) 120
BbrPI CACGTG 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 76
BccI CCATC 1 cut(s) 164
BciT130I CCWGG 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 375
BfmI CTRYAG 1 cut(s) 429
BfoI RGCGCY 1 cut(s) 124
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 118
Bme18I GGWCC 1 cut(s) 242
BmgBI CACGTC 1 cut(s) 386
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 122
BmrFI CCNGG 1 cut(s) 118
BmsI GCATC 1 cut(s) 76
BsaAI YACGTR 1 cut(s) 377
BsaHI GRCGYC 1 cut(s) 121
BsaJI CCNNGG 1 cut(s) 124
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 270
Bse1I ACTGG 1 cut(s) 264
Bse3DI GCAATG 1 cut(s) 294
BseBI CCWGG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 124
BseGI GGATG 1 cut(s) 403
BseLI CCNNNNNNNGG 2 cut(s) 62, 270
BseMI GCAATG 1 cut(s) 294
BseNI ACTGG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 259
BshFI GGCC 1 cut(s) 44
BshNI GGYRCC 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 16
BslI CCNNNNNNNGG 2 cut(s) 62, 270
BsmAI GTCTC 1 cut(s) 375
BsnI GGCC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 16
Bsp1407I TGTACA 1 cut(s) 458
Bsp143I GATC 1 cut(s) 158
BspACI CCGC 1 cut(s) 257
BspANI GGCC 1 cut(s) 44
BspFNI CGCG 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 122
BspMAI CTGCAG 1 cut(s) 433
BspPI GGATC 1 cut(s) 153
BspT107I GGYRCC 1 cut(s) 120
BsrDI GCAATG 1 cut(s) 294
BsrGI TGTACA 1 cut(s) 458
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 1 cut(s) 158
BssNI GRCGYC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 124
Bst2UI CCWGG 1 cut(s) 118
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 498
BstACI GRCGYC 1 cut(s) 121
BstAUI TGTACA 1 cut(s) 458
BstBAI YACGTR 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 261
BstF5I GGATG 1 cut(s) 403
BstFNI CGCG 1 cut(s) 259
BstH2I RGCGCY 1 cut(s) 124
BstHHI GCGC 1 cut(s) 123
BstKTI GATC 1 cut(s) 161
BstMAI GTCTC 1 cut(s) 375
BstMBI GATC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 118
BstSCI CCNGG 1 cut(s) 116
BstSFI CTRYAG 1 cut(s) 429
BstUI CGCG 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 76
BstXI CCANNNNNNTGG 1 cut(s) 577
BsuRI GGCC 1 cut(s) 44
BtrI CACGTC 1 cut(s) 386
BtsCI GGATG 1 cut(s) 403
BtsIMutI CAGTG 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 261
CfoI GCGC 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 242
Csp6I GTAC 2 cut(s) 267, 459
CviAII CATG 4 cut(s) 136, 145, 150, 296
CviJI RGCY 6 cut(s) 44, 198, 263, 436, 478, 520
CviKI_1 RGCY 6 cut(s) 44, 198, 263, 436, 478, 520
CviQI GTAC 2 cut(s) 267, 459
DinI GGCGCC 1 cut(s) 122
DpnI GATC 1 cut(s) 160
DpnII GATC 1 cut(s) 158
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
Eco130I CCWWGG 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 102
Eco72I CACGTG 1 cut(s) 377
EcoRI GAATTC 1 cut(s) 560
EcoRII CCWGG 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 124
EgeI GGCGCC 1 cut(s) 122
EheI GGCGCC 1 cut(s) 122
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 4 cut(s) 139, 148, 153, 299
FalI AAGNNNNNCTT 2 cut(s) 437, 469
FatI CATG 4 cut(s) 135, 144, 149, 295
FauNDI CATATG 1 cut(s) 31
FblI GTMKAC 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 90
FokI GGATG 1 cut(s) 410
Fsp4HI GCNGC 1 cut(s) 90
GlaI GCGC 1 cut(s) 122
GluI GCNGC 1 cut(s) 90
HaeII RGCGCY 1 cut(s) 124
HaeIII GGCC 1 cut(s) 44
HhaI GCGC 1 cut(s) 123
Hin1I GRCGYC 1 cut(s) 121
Hin1II CATG 4 cut(s) 139, 148, 153, 299
Hin6I GCGC 1 cut(s) 121
HinP1I GCGC 1 cut(s) 121
HincII GTYRAC 2 cut(s) 191, 547
HindII GTYRAC 2 cut(s) 191, 547
HinfI GANTC 5 cut(s) 5, 77, 178, 292, 566
HpaI GTTAAC 1 cut(s) 547
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 4 cut(s) 191, 459, 547, 585
Hpy188I TCNGA 4 cut(s) 82, 163, 251, 441
Hpy188III TCNNGA 3 cut(s) 9, 419, 470
Hpy8I GTNNAC 4 cut(s) 191, 459, 547, 585
Hpy99I CGWCG 2 cut(s) 159, 192
HpyAV CCTTC 3 cut(s) 29, 203, 397
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 2 cut(s) 376, 385
HpyCH4V TGCA 3 cut(s) 29, 92, 431
HpySE526I ACGT 2 cut(s) 376, 385
Hsp92I GRCGYC 1 cut(s) 121
Hsp92II CATG 4 cut(s) 139, 148, 153, 299
HspAI GCGC 1 cut(s) 121
KasI GGCGCC 1 cut(s) 120
KspAI GTTAAC 1 cut(s) 547
Kzo9I GATC 1 cut(s) 158
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 7 cut(s) 2, 103, 130, 258, 277, 300, 530
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 76
MaeII ACGT 2 cut(s) 376, 385
MaeIII GTNAC 1 cut(s) 212
MalI GATC 1 cut(s) 160
MboI GATC 1 cut(s) 158
MboII GAAGA 2 cut(s) 95, 515
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 7 cut(s) 71, 236, 335, 414, 422, 495, 560
Mly113I GGCGCC 1 cut(s) 121
MlyI GAGTC 1 cut(s) 575
MnlI CCTC 5 cut(s) 34, 55, 224, 268, 587
MseI TTAA 3 cut(s) 342, 546, 555
MslI CAYNNNNRTG 1 cut(s) 575
MspR9I CCNGG 1 cut(s) 118
MvaI CCWGG 1 cut(s) 118
MvnI CGCG 1 cut(s) 259
NarI GGCGCC 1 cut(s) 121
NdeI CATATG 1 cut(s) 31
NdeII GATC 1 cut(s) 158
NlaIII CATG 4 cut(s) 139, 148, 153, 299
NlaIV GGNNCC 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 212
PcsI WCGNNNNNNNCGW 1 cut(s) 382
PfeI GAWTC 4 cut(s) 5, 77, 178, 292
PkrI GCNGC 1 cut(s) 91
PleI GAGTC 1 cut(s) 574
PluTI GGCGCC 1 cut(s) 124
PmaCI CACGTG 1 cut(s) 377
PmlI CACGTG 1 cut(s) 377
PpsI GAGTC 1 cut(s) 574
Ppu21I YACGTR 1 cut(s) 377
Psp6I CCWGG 1 cut(s) 116
PspCI CACGTG 1 cut(s) 377
PspGI CCWGG 1 cut(s) 116
PspN4I GGNNCC 1 cut(s) 122
PspPI GGNCC 1 cut(s) 242
PstI CTGCAG 1 cut(s) 433
RsaI GTAC 2 cut(s) 268, 460
RsaNI GTAC 2 cut(s) 267, 459
RseI CAYNNNNRTG 1 cut(s) 575
SalI GTCGAC 1 cut(s) 189
SaqAI TTAA 3 cut(s) 342, 546, 555
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 1 cut(s) 158
Sau96I GGNCC 1 cut(s) 242
SchI GAGTC 1 cut(s) 575
ScrFI CCNGG 1 cut(s) 118
SduI GDGCHC 1 cut(s) 16
SetI ASST 8 cut(s) 214, 235, 247, 379, 388, 438, 480, 522
SfaNI GCATC 1 cut(s) 76
SfcI CTRYAG 1 cut(s) 429
SfoI GGCGCC 1 cut(s) 122
SinI GGWCC 1 cut(s) 242
SmiMI CAYNNNNRTG 1 cut(s) 575
Sse9I AATT 7 cut(s) 71, 236, 335, 414, 422, 495, 560
SsiI CCGC 1 cut(s) 257
SspDI GGCGCC 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 116
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 2 cut(s) 379, 388
TaqI TCGA 4 cut(s) 157, 190, 229, 564
TasI AATT 7 cut(s) 71, 236, 335, 414, 422, 495, 560
TatI WGTACW 2 cut(s) 266, 458
TfiI GAWTC 4 cut(s) 5, 77, 178, 292
Tru1I TTAA 3 cut(s) 342, 546, 555
Tru9I TTAA 3 cut(s) 342, 546, 555
TscAI CASTG 1 cut(s) 221
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 3 cut(s) 48, 284, 506
TspRI CASTG 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 5 cut(s) 71, 236, 335, 414, 560
XmiI GTMKAC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.