Rw4G011320

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0004298
Physical Location & Seq
Reverse (-)
26850068 .. 26853477
3410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G011320.1

Sequence Viewer

Length: 495 bp
ATGGATTCAGGAGCACAGGAAGTGATTGCATATGAAGGAGAGGCCATTTTAGAACCATACGAGGGTATGGAATTTGAATCTGAAGATGCTGCAAAGATATTTTATGATGACTATGCCAGACGCCTTGGATTTGTCATGCGTGTCATGTCATGTCGTCGATCCGAAAGAGATGGTAGGATTCTCGCTCGTCGACTTGGCTGTAATAAGGAAGGTCACTGTGTTAGTATTCGAGGTAAATTTGGACCCGTCAGAAAACCGCGAGCCAGTACAAGGGAGGGTTGTAAGGCAATGATTCATGTCAAGTATGATAAATCTGGTAAATGGGTGATTACAAAATTTGTTAAGGAACATAACCATTCACTTGTGGTGTCTCCACGTGAAGCACGTCAAACAATGGTCAGTAGTTTTCTTATACTTAGTAATATTTGCCAGTTCCTATATATAATTGGACTTTCAATTCTGGGGATTATTAGTGTCTCACATGTTTCGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1

Protein Analysis

164

Amino Acids

18.57

Weight (kDa)

9.16

Isoelectric Point (pI)

49.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 34 - 122 1.3e-28 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 190
AccII CGCG 1 cut(s) 259
AciI CCGC 1 cut(s) 257
AclWI GGATC 1 cut(s) 153
AcsI RAATTY 3 cut(s) 71, 236, 335
AcuI CTGAAG 1 cut(s) 102
AcvI CACGTG 1 cut(s) 377
AcyI GRCGYC 1 cut(s) 121
AfaI GTAC 1 cut(s) 268
AfiI CCNNNNNNNGG 2 cut(s) 62, 270
AflIII ACRYGT 1 cut(s) 481
AgsI TTSAA 2 cut(s) 77, 456
AjiI CACGTC 1 cut(s) 386
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 2 cut(s) 375, 481
AlwI GGATC 1 cut(s) 153
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 1 cut(s) 89
ApoI RAATTY 3 cut(s) 71, 236, 335
AspS9I GGNCC 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 337
AvaII GGWCC 1 cut(s) 242
BbrPI CACGTG 1 cut(s) 377
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 76
BccI CCATC 1 cut(s) 164
BcoDI GTCTC 2 cut(s) 375, 481
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 242
BmgBI CACGTC 1 cut(s) 386
BmgT120I GGNCC 1 cut(s) 242
BmiI GGNNCC 1 cut(s) 244
BmsI GCATC 1 cut(s) 76
BsaAI YACGTR 1 cut(s) 377
BsaHI GRCGYC 1 cut(s) 121
BsaJI CCNNGG 1 cut(s) 124
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 270
Bse1I ACTGG 2 cut(s) 264, 430
Bse3DI GCAATG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 124
BseLI CCNNNNNNNGG 2 cut(s) 62, 270
BseMI GCAATG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 264, 430
BseXI GCAGC 1 cut(s) 76
Bsh1236I CGCG 1 cut(s) 259
BshFI GGCC 1 cut(s) 44
BsiHKAI GWGCWC 1 cut(s) 16
BslI CCNNNNNNNGG 2 cut(s) 62, 270
BsmAI GTCTC 2 cut(s) 375, 481
BsnI GGCC 1 cut(s) 44
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 1 cut(s) 158
BspACI CCGC 1 cut(s) 257
BspANI GGCC 1 cut(s) 44
BspFNI CGCG 1 cut(s) 259
BspLI GGNNCC 1 cut(s) 244
BspPI GGATC 1 cut(s) 153
BsrDI GCAATG 1 cut(s) 294
BsrI ACTGG 2 cut(s) 264, 430
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 1 cut(s) 158
BssNI GRCGYC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 124
Bst4CI ACNGT 1 cut(s) 218
BstACI GRCGYC 1 cut(s) 121
BstBAI YACGTR 1 cut(s) 377
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 1 cut(s) 416
BstFNI CGCG 1 cut(s) 259
BstKTI GATC 1 cut(s) 161
BstMAI GTCTC 2 cut(s) 375, 481
BstMBI GATC 1 cut(s) 158
BstNSI RCATGY 1 cut(s) 485
BstUI CGCG 1 cut(s) 259
BstV1I GCAGC 1 cut(s) 76
BsuRI GGCC 1 cut(s) 44
BtrI CACGTC 1 cut(s) 386
BtsIMutI CAGTG 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 261
Cfr13I GGNCC 1 cut(s) 242
CseI GACGC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 267
CviAII CATG 5 cut(s) 136, 145, 150, 296, 482
CviJI RGCY 3 cut(s) 44, 198, 263
CviKI_1 RGCY 3 cut(s) 44, 198, 263
CviQI GTAC 1 cut(s) 267
DdeI CTNAG 1 cut(s) 416
DpnI GATC 1 cut(s) 160
DpnII GATC 1 cut(s) 158
Eco130I CCWWGG 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 242
Eco57I CTGAAG 1 cut(s) 102
Eco72I CACGTG 1 cut(s) 377
EcoT14I CCWWGG 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 124
FaeI CATG 5 cut(s) 139, 148, 153, 299, 485
FatI CATG 5 cut(s) 135, 144, 149, 295, 481
FauNDI CATATG 1 cut(s) 31
FblI GTMKAC 1 cut(s) 190
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 90
HaeIII GGCC 1 cut(s) 44
HgaI GACGC 1 cut(s) 129
Hin1I GRCGYC 1 cut(s) 121
Hin1II CATG 5 cut(s) 139, 148, 153, 299, 485
HincII GTYRAC 1 cut(s) 191
HindII GTYRAC 1 cut(s) 191
HinfI GANTC 4 cut(s) 5, 77, 178, 292
HphI GGTGA 1 cut(s) 337
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 3 cut(s) 82, 163, 251
Hpy188III TCNNGA 1 cut(s) 9
Hpy8I GTNNAC 1 cut(s) 191
Hpy99I CGWCG 2 cut(s) 159, 192
HpyAV CCTTC 2 cut(s) 29, 203
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 2 cut(s) 376, 385
HpyCH4V TGCA 2 cut(s) 29, 92
HpyF3I CTNAG 1 cut(s) 416
HpySE526I ACGT 2 cut(s) 376, 385
Hsp92I GRCGYC 1 cut(s) 121
Hsp92II CATG 5 cut(s) 139, 148, 153, 299, 485
Kzo9I GATC 1 cut(s) 158
LmnI GCTCC 1 cut(s) 11
LpnPI CCDG 6 cut(s) 2, 130, 277, 300, 443, 446
Lsp1109I GCAGC 1 cut(s) 76
LweI GCATC 1 cut(s) 76
MaeII ACGT 2 cut(s) 376, 385
MaeIII GTNAC 1 cut(s) 212
MalI GATC 1 cut(s) 160
MboI GATC 1 cut(s) 158
MboII GAAGA 1 cut(s) 95
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 5 cut(s) 71, 236, 335, 444, 456
MnlI CCTC 4 cut(s) 34, 55, 224, 268
MseI TTAA 1 cut(s) 342
MvnI CGCG 1 cut(s) 259
NdeI CATATG 1 cut(s) 31
NdeII GATC 1 cut(s) 158
NlaIII CATG 5 cut(s) 139, 148, 153, 299, 485
NlaIV GGNNCC 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 212
NspI RCATGY 1 cut(s) 485
PciI ACATGT 1 cut(s) 481
PcsI WCGNNNNNNNCGW 1 cut(s) 382
PfeI GAWTC 4 cut(s) 5, 77, 178, 292
PkrI GCNGC 1 cut(s) 91
PmaCI CACGTG 1 cut(s) 377
PmlI CACGTG 1 cut(s) 377
Ppu21I YACGTR 1 cut(s) 377
PscI ACATGT 1 cut(s) 481
PspCI CACGTG 1 cut(s) 377
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 1 cut(s) 242
RsaI GTAC 1 cut(s) 268
RsaNI GTAC 1 cut(s) 267
SalI GTCGAC 1 cut(s) 189
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 1 cut(s) 90
Sau3AI GATC 1 cut(s) 158
Sau96I GGNCC 1 cut(s) 242
SduI GDGCHC 1 cut(s) 16
SetI ASST 4 cut(s) 214, 235, 379, 388
SfaNI GCATC 1 cut(s) 76
SinI GGWCC 1 cut(s) 242
Sse9I AATT 5 cut(s) 71, 236, 335, 444, 456
SsiI CCGC 1 cut(s) 257
SspI AATATT 1 cut(s) 424
StyI CCWWGG 1 cut(s) 124
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 2 cut(s) 379, 388
TaqI TCGA 4 cut(s) 157, 190, 229, 488
TasI AATT 5 cut(s) 71, 236, 335, 444, 456
TatI WGTACW 1 cut(s) 266
TfiI GAWTC 4 cut(s) 5, 77, 178, 292
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 1 cut(s) 221
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 48, 284
TspRI CASTG 1 cut(s) 221
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 3 cut(s) 71, 236, 335
XceI RCATGY 1 cut(s) 485
XmiI GTMKAC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.